Wall clock time and date at job start Tue Mar 31 2020 08:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46812 * 2 1 4 4 C 1.50695 * 109.47063 * 239.99851 * 2 1 3 5 5 H 1.07998 * 120.00418 * 245.62304 * 4 2 1 6 6 C 1.37879 * 120.00201 * 65.62961 * 4 2 1 7 7 N 1.31514 * 120.00393 * 197.18198 * 6 4 2 8 8 Si 1.86804 * 119.99786 * 17.45333 * 6 4 2 9 9 H 1.48502 * 109.47029 * 179.72709 * 8 6 4 10 10 H 1.48503 * 109.46948 * 299.72609 * 8 6 4 11 11 H 1.48492 * 109.47033 * 59.72641 * 8 6 4 12 12 N 1.46502 * 109.47016 * 119.99690 * 2 1 3 13 13 C 1.34775 * 120.00053 * 275.00255 * 12 2 1 14 14 O 1.21280 * 120.00115 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99887 * 180.02562 * 13 12 2 16 16 C 1.52996 * 109.47305 * 179.97438 * 15 13 12 17 17 C 1.50697 * 109.47305 * 179.97438 * 16 15 13 18 18 C 1.38306 * 119.96423 * 269.72825 * 17 16 15 19 19 C 1.38269 * 120.14799 * 179.72920 * 18 17 16 20 20 C 1.38120 * 120.07750 * 0.54289 * 19 18 17 21 21 C 1.38895 * 119.92015 * 359.73385 * 20 19 18 22 22 N 1.39677 * 120.07111 * 179.97438 * 21 20 19 23 23 C 1.46499 * 120.00080 * 180.02562 * 22 21 20 24 24 C 1.46505 * 120.00278 * 0.02562 * 22 21 20 25 25 C 1.38086 * 119.96321 * 90.00143 * 17 16 15 26 26 H 1.08994 * 109.46957 * 306.33629 * 1 2 3 27 27 H 1.09002 * 109.47065 * 66.34399 * 1 2 3 28 28 H 1.09000 * 109.46665 * 186.33884 * 1 2 3 29 29 H 0.97001 * 119.99221 * 355.17115 * 7 6 4 30 30 H 0.96996 * 119.99659 * 94.99859 * 12 2 1 31 31 H 1.08996 * 109.47190 * 300.00321 * 15 13 12 32 32 H 1.09000 * 109.47003 * 60.00180 * 15 13 12 33 33 H 1.09005 * 109.47412 * 300.00144 * 16 15 13 34 34 H 1.09006 * 109.47184 * 60.00244 * 16 15 13 35 35 H 1.07996 * 119.92061 * 359.97438 * 18 17 16 36 36 H 1.08004 * 119.95773 * 180.27738 * 19 18 17 37 37 H 1.07994 * 120.04388 * 179.75079 * 20 19 18 38 38 H 1.09002 * 109.47646 * 89.99554 * 23 22 21 39 39 H 1.08999 * 109.47412 * 210.00089 * 23 22 21 40 40 H 1.09001 * 109.47214 * 330.00089 * 23 22 21 41 41 H 1.08996 * 109.46896 * 89.99926 * 24 22 21 42 42 H 1.08997 * 109.47175 * 210.00516 * 24 22 21 43 43 H 1.09007 * 109.46842 * 329.99849 * 24 22 21 44 44 H 1.08004 * 120.03287 * 359.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1340 6 6 1.7977 -0.1756 -2.4794 7 7 1.9225 -0.9278 -3.5509 8 14 1.3097 1.6194 -2.6501 9 1 1.1227 1.9471 -4.0864 10 1 0.0398 1.8589 -1.9184 11 1 2.3784 2.4792 -2.0813 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8590 1.1587 2.4115 15 6 2.6499 -0.7284 3.5875 16 6 2.7018 0.2548 4.7586 17 6 3.2041 -0.4556 5.9890 18 6 2.3084 -1.0654 6.8486 19 6 2.7655 -1.7230 7.9757 20 6 4.1180 -1.7634 8.2528 21 6 5.0197 -1.1471 7.3947 22 7 6.3881 -1.1856 7.6722 23 6 7.3378 -0.5346 6.7664 24 6 6.8738 -1.8769 8.8691 25 6 4.5576 -0.4921 6.2601 26 1 -0.3633 0.6089 0.8278 27 1 -0.3633 0.4124 -0.9413 28 1 -0.3633 -1.0214 0.1135 29 1 2.2471 -1.8383 -3.4691 30 1 2.2490 -1.6317 1.1527 31 1 1.9778 -1.5507 3.8325 32 1 3.6493 -1.1201 3.3979 33 1 3.3742 1.0769 4.5133 34 1 1.7026 0.6469 4.9483 35 1 1.2500 -1.0312 6.6367 36 1 2.0637 -2.2020 8.6424 37 1 4.4741 -2.2738 9.1354 38 1 7.4888 0.4986 7.0794 39 1 8.2893 -1.0655 6.7946 40 1 6.9419 -0.5523 5.7509 41 1 7.0788 -2.9200 8.6281 42 1 7.7883 -1.3983 9.2192 43 1 6.1154 -1.8267 9.6505 44 1 5.2561 -0.0123 5.5906 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189374671.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:46 Heat of formation + Delta-G solvation = -17.259154 kcal Electronic energy + Delta-G solvation = -22314.009375 eV Core-core repulsion = 19037.823663 eV Total energy + Delta-G solvation = -3276.185712 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.90056 -38.96678 -36.67525 -35.00372 -33.55602 -32.40248 -30.65615 -30.07405 -29.19878 -28.15322 -25.01585 -24.90142 -24.29472 -21.76561 -20.84036 -20.06272 -19.47182 -17.74912 -17.40762 -16.21950 -16.08650 -15.57001 -15.34525 -15.23969 -14.97332 -14.25403 -13.93611 -13.82198 -13.38964 -13.15245 -12.93566 -12.80156 -12.68579 -12.62025 -12.32192 -12.16971 -12.00428 -11.79721 -11.65027 -11.46522 -11.33161 -10.89927 -10.73960 -10.45889 -10.00957 -9.94132 -9.77783 -9.19643 -9.05424 -8.73763 -8.30655 -8.12635 -7.44550 -6.56956 -4.20111 1.35723 1.54716 2.89393 3.31578 3.40361 3.45991 3.61209 3.76366 4.09704 4.43304 4.64856 4.70542 4.86200 4.95761 4.97996 5.13022 5.18603 5.21978 5.24030 5.29004 5.34539 5.38604 5.43380 5.54209 5.56308 5.65268 5.83449 5.94246 6.02664 6.17477 6.30477 6.42338 6.47672 6.58888 6.69898 6.71128 6.80347 6.99833 7.03399 7.32966 7.33234 7.44559 7.69502 8.24907 8.53187 8.73140 9.03731 9.48913 10.83720 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.026387 B = 0.002809 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.891163 B = 9964.368601 C =10413.749163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.240 3.760 3 H 0.040 0.960 4 C -0.617 4.617 5 H 0.061 0.939 6 C 0.038 3.962 7 N -0.899 5.899 8 Si 1.043 2.957 9 H -0.284 1.284 10 H -0.271 1.271 11 H -0.280 1.280 12 N -0.705 5.705 13 C 0.500 3.500 14 O -0.559 6.559 15 C -0.134 4.134 16 C -0.065 4.065 17 C -0.029 4.029 18 C -0.174 4.174 19 C -0.072 4.072 20 C -0.206 4.206 21 C 0.212 3.788 22 N -0.641 5.641 23 C 0.093 3.907 24 C 0.095 3.905 25 C -0.193 4.193 26 H 0.029 0.971 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.268 0.732 30 H 0.393 0.607 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.047 0.953 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.046 0.954 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.499 -2.791 24.745 26.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.137 3.863 3 H 0.058 0.942 4 C -0.655 4.655 5 H 0.079 0.921 6 C -0.169 4.169 7 N -0.532 5.532 8 Si 0.871 3.129 9 H -0.209 1.209 10 H -0.197 1.197 11 H -0.206 1.206 12 N -0.352 5.352 13 C 0.286 3.714 14 O -0.439 6.439 15 C -0.174 4.174 16 C -0.103 4.103 17 C -0.030 4.030 18 C -0.194 4.194 19 C -0.091 4.091 20 C -0.228 4.228 21 C 0.112 3.888 22 N -0.354 5.354 23 C -0.051 4.051 24 C -0.048 4.048 25 C -0.215 4.215 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.226 0.774 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.045 -0.816 23.662 24.702 hybrid contribution 0.735 -1.864 1.111 2.291 sum 7.780 -2.679 24.773 26.104 Atomic orbital electron populations 1.22495 0.98967 1.00058 1.00335 1.18985 0.90529 0.94171 0.82638 0.94218 1.22093 1.41661 1.10534 0.91202 0.92115 1.25702 0.94289 1.05131 0.91748 1.70884 1.41103 1.09910 1.31319 0.84062 0.77646 0.75075 0.76122 1.20933 1.19745 1.20636 1.46305 1.65131 1.13733 1.10045 1.20576 0.78396 0.87552 0.84913 1.90637 1.51672 1.16222 1.85371 1.21623 1.03015 0.99440 0.93301 1.20342 1.02853 0.96918 0.90171 1.19725 0.92573 0.95372 0.95329 1.20858 0.99429 1.02656 0.96418 1.20849 0.94623 0.97103 0.96504 1.20610 0.93128 1.07522 1.01533 1.17808 0.83214 0.94189 0.93616 1.46292 1.02993 1.59954 1.26158 1.21634 0.92375 0.96870 0.94172 1.21594 0.99679 0.96319 0.87217 1.20594 0.95611 1.06746 0.98523 0.95188 0.91992 0.93790 0.92158 0.77439 0.89291 0.89389 0.90310 0.90138 0.86353 0.86343 0.86416 0.93437 0.91682 0.91071 0.93550 0.91739 0.91397 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 9.16 37.16 0.34 -3.36 16 2 C 0.24 5.89 2.14 -69.08 -0.15 5.74 16 3 H 0.04 1.06 6.23 -51.93 -0.32 0.73 16 4 C -0.62 -16.92 9.00 -34.44 -0.31 -17.23 16 5 H 0.06 1.73 7.96 -52.49 -0.42 1.32 16 6 C 0.04 1.07 5.29 -17.82 -0.09 0.98 16 7 N -0.90 -26.99 13.70 55.43 0.76 -26.23 16 8 Si 1.04 25.41 26.29 -169.99 -4.47 20.94 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.27 -6.20 5.76 56.52 0.33 -5.88 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.70 -14.48 5.07 -54.93 -0.28 -14.75 16 13 C 0.50 9.58 7.79 -10.99 -0.09 9.49 16 14 O -0.56 -12.68 15.64 5.56 0.09 -12.60 16 15 C -0.13 -1.87 5.68 -27.89 -0.16 -2.03 16 16 C -0.07 -0.87 4.63 -27.89 -0.13 -1.00 16 17 C -0.03 -0.36 5.13 -104.65 -0.54 -0.89 16 18 C -0.17 -1.97 9.69 -39.55 -0.38 -2.36 16 19 C -0.07 -0.74 10.04 -39.61 -0.40 -1.14 16 20 C -0.21 -2.11 9.21 -39.38 -0.36 -2.48 16 21 C 0.21 2.35 6.55 -83.79 -0.55 1.81 16 22 N -0.64 -5.91 3.41 -187.55 -0.64 -6.55 16 23 C 0.09 0.70 10.19 59.85 0.61 1.31 16 24 C 0.10 0.62 10.19 59.85 0.61 1.23 16 25 C -0.19 -2.28 8.86 -39.38 -0.35 -2.63 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 1.46 4.88 -51.93 -0.25 1.21 16 28 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.27 7.96 8.73 -40.82 -0.36 7.61 16 30 H 0.39 7.18 8.53 -40.82 -0.35 6.83 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.08 1.12 8.04 -51.93 -0.42 0.70 16 34 H 0.08 1.12 8.04 -51.93 -0.42 0.71 16 35 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 37 H 0.12 0.98 6.14 -52.49 -0.32 0.66 16 38 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.38 8.07 -51.93 -0.42 -0.03 16 40 H 0.07 0.57 6.20 -51.93 -0.32 0.25 16 41 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.06 0.32 8.07 -51.93 -0.42 -0.10 16 43 H 0.07 0.41 6.20 -51.93 -0.32 0.09 16 44 H 0.12 1.35 6.14 -52.48 -0.32 1.03 16 LS Contribution 355.84 15.07 5.36 5.36 Total: -1.00 -32.70 355.84 -8.04 -40.73 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -6.91 Total: 5.63 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -1.94 Total: -12.55 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: -0.16 Total: -47.53 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.09 Total: -12.60 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -4.47 Total: 20.94 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.70 -8.04 -40.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189374671.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.474 kcal (2) G-P(sol) polarization free energy of solvation -32.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds