Wall clock time and date at job start Tue Mar 31 2020 08:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46812 * 2 1 4 4 C 1.50695 * 109.47063 * 239.99851 * 2 1 3 5 5 H 1.07998 * 120.00418 * 245.62304 * 4 2 1 6 6 C 1.37879 * 120.00201 * 65.62961 * 4 2 1 7 7 N 1.31514 * 120.00393 * 197.18198 * 6 4 2 8 8 Si 1.86804 * 119.99786 * 17.45333 * 6 4 2 9 9 H 1.48502 * 109.47029 * 179.72709 * 8 6 4 10 10 H 1.48503 * 109.46948 * 299.72609 * 8 6 4 11 11 H 1.48492 * 109.47033 * 59.72641 * 8 6 4 12 12 N 1.46502 * 109.47016 * 119.99690 * 2 1 3 13 13 C 1.34775 * 120.00053 * 275.00255 * 12 2 1 14 14 O 1.21280 * 120.00115 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99887 * 180.02562 * 13 12 2 16 16 C 1.52996 * 109.47305 * 179.97438 * 15 13 12 17 17 C 1.50697 * 109.47305 * 179.97438 * 16 15 13 18 18 C 1.38306 * 119.96423 * 269.72825 * 17 16 15 19 19 C 1.38269 * 120.14799 * 179.72920 * 18 17 16 20 20 C 1.38120 * 120.07750 * 0.54289 * 19 18 17 21 21 C 1.38895 * 119.92015 * 359.73385 * 20 19 18 22 22 N 1.39677 * 120.07111 * 179.97438 * 21 20 19 23 23 C 1.46499 * 120.00080 * 180.02562 * 22 21 20 24 24 C 1.46505 * 120.00278 * 0.02562 * 22 21 20 25 25 C 1.38086 * 119.96321 * 90.00143 * 17 16 15 26 26 H 1.08994 * 109.46957 * 306.33629 * 1 2 3 27 27 H 1.09002 * 109.47065 * 66.34399 * 1 2 3 28 28 H 1.09000 * 109.46665 * 186.33884 * 1 2 3 29 29 H 0.97001 * 119.99221 * 355.17115 * 7 6 4 30 30 H 0.96996 * 119.99659 * 94.99859 * 12 2 1 31 31 H 1.08996 * 109.47190 * 300.00321 * 15 13 12 32 32 H 1.09000 * 109.47003 * 60.00180 * 15 13 12 33 33 H 1.09005 * 109.47412 * 300.00144 * 16 15 13 34 34 H 1.09006 * 109.47184 * 60.00244 * 16 15 13 35 35 H 1.07996 * 119.92061 * 359.97438 * 18 17 16 36 36 H 1.08004 * 119.95773 * 180.27738 * 19 18 17 37 37 H 1.07994 * 120.04388 * 179.75079 * 20 19 18 38 38 H 1.09002 * 109.47646 * 89.99554 * 23 22 21 39 39 H 1.08999 * 109.47412 * 210.00089 * 23 22 21 40 40 H 1.09001 * 109.47214 * 330.00089 * 23 22 21 41 41 H 1.08996 * 109.46896 * 89.99926 * 24 22 21 42 42 H 1.08997 * 109.47175 * 210.00516 * 24 22 21 43 43 H 1.09007 * 109.46842 * 329.99849 * 24 22 21 44 44 H 1.08004 * 120.03287 * 359.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1340 6 6 1.7977 -0.1756 -2.4794 7 7 1.9225 -0.9278 -3.5509 8 14 1.3097 1.6194 -2.6501 9 1 1.1227 1.9471 -4.0864 10 1 0.0398 1.8589 -1.9184 11 1 2.3784 2.4792 -2.0813 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8590 1.1587 2.4115 15 6 2.6499 -0.7284 3.5875 16 6 2.7018 0.2548 4.7586 17 6 3.2041 -0.4556 5.9890 18 6 2.3084 -1.0654 6.8486 19 6 2.7655 -1.7230 7.9757 20 6 4.1180 -1.7634 8.2528 21 6 5.0197 -1.1471 7.3947 22 7 6.3881 -1.1856 7.6722 23 6 7.3378 -0.5346 6.7664 24 6 6.8738 -1.8769 8.8691 25 6 4.5576 -0.4921 6.2601 26 1 -0.3633 0.6089 0.8278 27 1 -0.3633 0.4124 -0.9413 28 1 -0.3633 -1.0214 0.1135 29 1 2.2471 -1.8383 -3.4691 30 1 2.2490 -1.6317 1.1527 31 1 1.9778 -1.5507 3.8325 32 1 3.6493 -1.1201 3.3979 33 1 3.3742 1.0769 4.5133 34 1 1.7026 0.6469 4.9483 35 1 1.2500 -1.0312 6.6367 36 1 2.0637 -2.2020 8.6424 37 1 4.4741 -2.2738 9.1354 38 1 7.4888 0.4986 7.0794 39 1 8.2893 -1.0655 6.7946 40 1 6.9419 -0.5523 5.7509 41 1 7.0788 -2.9200 8.6281 42 1 7.7883 -1.3983 9.2192 43 1 6.1154 -1.8267 9.6505 44 1 5.2561 -0.0123 5.5906 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189374671.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:46 Heat of formation + Delta-G solvation = -37.528409 kcal Electronic energy + Delta-G solvation = -22314.888316 eV Core-core repulsion = 19037.823663 eV Total energy + Delta-G solvation = -3277.064652 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.89192 -40.35971 -37.47328 -36.80644 -34.61693 -34.43142 -31.92556 -31.14938 -30.29237 -28.89927 -26.90144 -25.71564 -25.49075 -22.79722 -22.28739 -21.22857 -20.93897 -19.73897 -18.30207 -17.66775 -17.06333 -16.89643 -16.34772 -16.22938 -15.93523 -15.64512 -15.10376 -14.89770 -14.80838 -14.59965 -14.32482 -14.08574 -13.84297 -13.67091 -13.46947 -13.43752 -13.24956 -12.91567 -12.77777 -12.70866 -12.42878 -12.32012 -11.96052 -11.90917 -11.67507 -11.61582 -11.16789 -10.80979 -10.63196 -10.47776 -9.89200 -9.62501 -8.81200 -8.16674 -6.45544 0.52295 0.73450 1.45266 1.50355 1.70028 1.78550 2.26971 2.40808 2.51586 2.99349 3.00275 3.74327 3.97078 4.05048 4.11750 4.23574 4.28961 4.37001 4.43669 4.50681 4.53113 4.60117 4.64802 4.66932 4.75213 4.76927 4.80203 4.81681 4.89633 4.91512 5.07610 5.09916 5.13261 5.22130 5.41243 5.44595 5.65097 5.66625 5.67726 5.85645 5.99679 6.00738 6.37851 6.51818 6.59193 6.86336 7.27907 7.46055 8.58415 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.026387 B = 0.002809 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.891163 B = 9964.368601 C =10413.749163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.242 3.758 3 H 0.021 0.979 4 C -0.614 4.614 5 H 0.040 0.960 6 C -0.006 4.006 7 N -0.927 5.927 8 Si 1.075 2.925 9 H -0.281 1.281 10 H -0.247 1.247 11 H -0.274 1.274 12 N -0.707 5.707 13 C 0.499 3.501 14 O -0.595 6.595 15 C -0.119 4.119 16 C -0.057 4.057 17 C -0.039 4.039 18 C -0.186 4.186 19 C -0.072 4.072 20 C -0.210 4.210 21 C 0.203 3.797 22 N -0.647 5.647 23 C 0.088 3.912 24 C 0.090 3.910 25 C -0.208 4.208 26 H 0.039 0.961 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.258 0.742 30 H 0.404 0.596 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.125 0.875 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.050 0.950 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.051 0.949 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.610 -3.124 27.072 28.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.137 3.863 3 H 0.039 0.961 4 C -0.652 4.652 5 H 0.058 0.942 6 C -0.207 4.207 7 N -0.562 5.562 8 Si 0.897 3.103 9 H -0.207 1.207 10 H -0.172 1.172 11 H -0.200 1.200 12 N -0.355 5.355 13 C 0.287 3.713 14 O -0.477 6.477 15 C -0.158 4.158 16 C -0.095 4.095 17 C -0.039 4.039 18 C -0.206 4.206 19 C -0.091 4.091 20 C -0.232 4.232 21 C 0.101 3.899 22 N -0.359 5.359 23 C -0.054 4.054 24 C -0.052 4.052 25 C -0.231 4.231 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.239 0.761 31 H 0.131 0.869 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.143 0.857 36 H 0.160 0.840 37 H 0.155 0.845 38 H 0.068 0.932 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.181 -1.183 26.027 27.025 hybrid contribution 0.800 -1.822 0.481 2.047 sum 7.980 -3.005 26.507 27.845 Atomic orbital electron populations 1.22372 0.97617 1.00786 1.00367 1.18716 0.91480 0.93034 0.83064 0.96092 1.22266 1.40649 1.09688 0.92598 0.94180 1.26855 0.94174 1.07914 0.91760 1.70986 1.43269 1.09745 1.32239 0.83661 0.78751 0.71334 0.76573 1.20663 1.17198 1.19988 1.46185 1.65491 1.14289 1.09565 1.21395 0.77143 0.87164 0.85553 1.90619 1.53065 1.18017 1.85967 1.21584 1.04059 0.99537 0.90663 1.20213 1.02115 0.96508 0.90669 1.19604 0.92994 0.96173 0.95176 1.21018 0.99716 1.03028 0.96859 1.21148 0.95173 0.96461 0.96294 1.20906 0.93145 1.07198 1.01958 1.18005 0.84394 0.94036 0.93489 1.46554 1.02540 1.59850 1.26988 1.21725 0.92823 0.97303 0.93591 1.21764 1.00511 0.96552 0.86409 1.20666 0.95566 1.07552 0.99281 0.94229 0.92619 0.92930 0.93284 0.76136 0.86945 0.87758 0.91694 0.90943 0.85659 0.83976 0.84483 0.93184 0.89872 0.91894 0.93016 0.90131 0.90850 0.86126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.85 9.16 71.98 0.66 -6.19 16 2 C 0.24 11.71 2.14 44.25 0.09 11.80 16 3 H 0.02 1.11 6.23 -2.39 -0.01 1.10 16 4 C -0.61 -33.82 9.00 25.60 0.23 -33.59 16 5 H 0.04 2.32 7.96 -2.91 -0.02 2.30 16 6 C -0.01 -0.36 5.29 84.66 0.45 0.09 16 7 N -0.93 -56.39 13.70 21.45 0.29 -56.09 16 8 Si 1.07 50.80 26.29 68.60 1.80 52.60 16 9 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 10 H -0.25 -10.68 5.76 99.48 0.57 -10.11 16 11 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 12 N -0.71 -28.41 5.07 -446.10 -2.26 -30.67 16 13 C 0.50 18.64 7.79 87.66 0.68 19.32 16 14 O -0.59 -26.72 15.64 -3.03 -0.05 -26.77 16 15 C -0.12 -3.13 5.68 29.85 0.17 -2.96 16 16 C -0.06 -1.49 4.63 29.85 0.14 -1.36 16 17 C -0.04 -0.91 5.13 -19.89 -0.10 -1.01 16 18 C -0.19 -3.91 9.69 22.29 0.22 -3.70 16 19 C -0.07 -1.31 10.04 22.25 0.22 -1.08 16 20 C -0.21 -3.83 9.21 22.40 0.21 -3.62 16 21 C 0.20 4.17 6.55 38.21 0.25 4.42 16 22 N -0.65 -10.73 3.41 -747.27 -2.55 -13.28 16 23 C 0.09 1.22 10.19 127.77 1.30 2.52 16 24 C 0.09 0.95 10.19 127.77 1.30 2.26 16 25 C -0.21 -4.74 8.86 22.40 0.20 -4.54 16 26 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.06 2.54 4.88 -2.39 -0.01 2.52 16 28 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.26 15.69 8.73 -92.71 -0.81 14.88 16 30 H 0.40 14.35 8.53 -92.71 -0.79 13.56 16 31 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.06 1.85 8.04 -2.38 -0.02 1.83 16 34 H 0.07 1.99 8.04 -2.38 -0.02 1.97 16 35 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 36 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 37 H 0.14 1.88 6.14 -2.91 -0.02 1.87 16 38 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.08 0.82 8.07 -2.39 -0.02 0.80 16 40 H 0.06 0.96 6.20 -2.39 -0.01 0.95 16 41 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.08 0.59 8.07 -2.39 -0.02 0.57 16 43 H 0.07 0.69 6.20 -2.38 -0.01 0.68 16 44 H 0.12 2.66 6.14 -2.91 -0.02 2.64 16 Total: -1.00 -69.86 355.84 3.29 -66.57 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 0.03 Total: 25.29 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 6.02 Total: -17.64 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -4.51 Total: -100.04 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.05 Total: -26.77 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 1.80 Total: 52.60 kcal Total: -69.86 3.29 -66.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189374671.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.039 kcal (2) G-P(sol) polarization free energy of solvation -69.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds