Wall clock time and date at job start Tue Mar 31 2020 08:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.47733 * 2 1 4 4 C 1.50700 * 109.47132 * 120.00665 * 2 1 3 5 5 H 1.07998 * 120.00408 * 119.99956 * 4 2 1 6 6 C 1.37879 * 119.99723 * 299.99477 * 4 2 1 7 7 N 1.31514 * 119.99951 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00093 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47246 * 59.99932 * 8 6 4 10 10 H 1.48497 * 109.47318 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47245 * 300.00170 * 8 6 4 12 12 N 1.46507 * 109.47054 * 240.00298 * 2 1 3 13 13 C 1.46502 * 119.99875 * 294.19130 * 12 2 1 14 14 C 1.34775 * 120.00224 * 114.19492 * 12 2 1 15 15 O 1.21272 * 120.00239 * 183.66617 * 14 12 2 16 16 C 1.50704 * 119.99631 * 3.65807 * 14 12 2 17 17 H 1.08995 * 109.47208 * 319.06219 * 16 14 12 18 18 C 1.52998 * 109.47244 * 79.06092 * 16 14 12 19 19 C 1.53008 * 109.46995 * 199.06224 * 16 14 12 20 20 H 1.09001 * 109.46829 * 300.00363 * 19 16 14 21 21 N 1.46898 * 109.47050 * 59.99882 * 19 16 14 22 22 C 1.50694 * 109.46973 * 180.02562 * 19 16 14 23 23 C 1.38237 * 119.99974 * 279.72621 * 22 19 16 24 24 C 1.38237 * 119.99824 * 179.79352 * 23 22 19 25 25 C 1.38226 * 119.99942 * 0.43582 * 24 23 22 26 26 C 1.38236 * 120.00094 * 359.81633 * 25 24 23 27 27 C 1.38226 * 120.00002 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.47187 * 299.99706 * 1 2 3 29 29 H 1.09001 * 109.47313 * 59.99950 * 1 2 3 30 30 H 1.09001 * 109.47186 * 179.97438 * 1 2 3 31 31 H 0.97005 * 119.99905 * 179.97438 * 7 6 4 32 32 H 1.09008 * 109.47083 * 264.78420 * 13 12 2 33 33 H 1.08996 * 109.47046 * 24.78190 * 13 12 2 34 34 H 1.08998 * 109.47077 * 144.78921 * 13 12 2 35 35 H 1.08998 * 109.47356 * 306.13206 * 18 16 14 36 36 H 1.09001 * 109.46925 * 66.13286 * 18 16 14 37 37 H 1.08994 * 109.47375 * 186.12873 * 18 16 14 38 38 H 1.00903 * 110.99888 * 59.99835 * 21 19 16 39 39 H 1.00896 * 111.00381 * 183.95431 * 21 19 16 40 40 H 1.07999 * 119.99818 * 359.97438 * 23 22 19 41 41 H 1.08001 * 119.99845 * 180.27298 * 24 23 22 42 42 H 1.08002 * 120.00266 * 179.83704 * 25 24 23 43 43 H 1.08009 * 120.00044 * 179.97438 * 26 25 24 44 44 H 1.08006 * 120.00105 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7106 1.2304 5 1 2.6531 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3224 -1.1198 4.0079 9 1 3.8074 -1.1193 4.0076 10 1 1.8269 -0.4202 5.2204 11 1 1.8279 -2.5200 4.0081 12 7 2.0182 -0.6906 -1.1963 13 6 1.7722 -2.1248 -1.3658 14 6 2.6939 -0.0065 -2.1407 15 8 3.0401 -0.5627 -3.1612 16 6 3.0189 1.4497 -1.9286 17 1 2.1625 1.9512 -1.4778 18 6 4.2286 1.5723 -1.0000 19 6 3.3411 2.1016 -3.2749 20 1 4.1975 1.6001 -3.7257 21 7 2.1796 1.9839 -4.1664 22 6 3.6667 3.5576 -3.0627 23 6 2.6473 4.4781 -2.9060 24 6 2.9461 5.8131 -2.7072 25 6 4.2640 6.2288 -2.6740 26 6 5.2832 5.3091 -2.8358 27 6 4.9846 3.9736 -3.0304 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7082 1.1607 3.4845 32 1 2.6364 -2.6862 -1.0105 33 1 0.8912 -2.4126 -0.7922 34 1 1.6062 -2.3427 -2.4208 35 1 4.0403 1.0148 -0.0825 36 1 5.1104 1.1675 -1.4967 37 1 4.3970 2.6219 -0.7593 38 1 1.3720 2.4413 -3.7705 39 1 2.3889 2.3495 -5.0832 40 1 1.6176 4.1538 -2.9361 41 1 2.1498 6.5316 -2.5804 42 1 4.4974 7.2722 -2.5212 43 1 6.3129 5.6341 -2.8103 44 1 5.7809 3.2551 -3.1572 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226828059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:09 Heat of formation + Delta-G solvation = -13.964560 kcal Electronic energy + Delta-G solvation = -24107.139640 eV Core-core repulsion = 20831.096793 eV Total energy + Delta-G solvation = -3276.042847 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -39.95542 -38.77840 -35.80685 -35.18616 -32.57013 -31.69370 -30.83928 -30.06408 -29.09458 -26.34724 -25.30178 -24.89466 -23.03137 -22.43835 -21.28654 -20.23653 -17.98170 -17.12705 -16.50700 -16.25919 -15.62257 -15.13949 -15.03650 -14.70253 -14.36915 -14.25658 -13.79737 -13.48113 -13.30312 -13.08174 -12.69082 -12.47820 -12.27977 -11.99054 -11.57927 -11.53585 -11.29683 -11.18612 -11.09301 -11.00577 -10.94428 -10.82302 -10.69128 -10.50236 -10.23556 -10.10489 -9.28097 -8.96509 -8.85152 -8.63467 -8.49819 -8.39374 -7.47193 -6.15339 -4.23073 1.34806 1.40362 3.24427 3.29530 3.32225 3.62724 3.76369 4.12050 4.34833 4.69685 4.83646 4.90280 4.99164 5.10754 5.15708 5.30722 5.45427 5.49086 5.57313 5.70121 5.88217 5.92088 5.99321 6.08842 6.21871 6.33911 6.36760 6.41502 6.46602 6.49926 6.55368 6.64861 6.66639 6.75350 6.81798 7.00104 7.01689 7.27174 7.34814 7.49718 7.63567 7.72341 7.89699 8.17300 8.60253 8.82079 9.22189 9.45790 10.89320 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.016040 B = 0.005104 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.266828 B = 5484.264084 C = 6331.450745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.253 3.747 3 H 0.055 0.945 4 C -0.526 4.526 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.889 5.889 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.596 5.596 13 C 0.102 3.898 14 C 0.524 3.476 15 O -0.560 6.560 16 C -0.093 4.093 17 H 0.091 0.909 18 C -0.142 4.142 19 C 0.150 3.850 20 H 0.095 0.905 21 N -0.825 5.825 22 C -0.107 4.107 23 C -0.117 4.117 24 C -0.117 4.117 25 C -0.127 4.127 26 C -0.120 4.120 27 C -0.109 4.109 28 H 0.093 0.907 29 H 0.011 0.989 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.040 0.960 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.335 0.665 39 H 0.339 0.661 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.951 8.740 -8.681 12.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.152 3.848 3 H 0.073 0.927 4 C -0.565 4.565 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.527 5.527 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.327 5.327 13 C -0.042 4.042 14 C 0.312 3.688 15 O -0.440 6.440 16 C -0.114 4.114 17 H 0.110 0.890 18 C -0.200 4.200 19 C 0.038 3.962 20 H 0.113 0.887 21 N -0.353 5.353 22 C -0.109 4.109 23 C -0.136 4.136 24 C -0.135 4.135 25 C -0.145 4.145 26 C -0.138 4.138 27 C -0.128 4.128 28 H 0.111 0.889 29 H 0.030 0.970 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.148 0.852 39 H 0.151 0.849 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.077 7.738 -8.945 12.510 hybrid contribution 0.223 0.717 1.140 1.365 sum 4.300 8.455 -7.805 12.284 Atomic orbital electron populations 1.22135 0.98421 0.99794 1.00637 1.19055 0.91177 0.93509 0.81042 0.92717 1.21301 1.31831 1.13200 0.90127 0.92102 1.24874 0.94817 0.94939 0.98937 1.69851 1.36221 1.22658 1.23952 0.86582 0.79257 0.79781 0.81974 1.20209 1.21220 1.20194 1.48181 1.54044 1.08916 1.21587 1.21271 1.00577 0.81976 1.00335 1.20103 0.77910 0.88190 0.82618 1.90567 1.54709 1.70862 1.27825 1.21218 1.00672 0.94306 0.95244 0.89048 1.21753 0.95826 1.02391 1.00020 1.20289 0.94577 0.88372 0.92963 0.88739 1.58824 1.05768 1.65275 1.05407 1.20954 0.93669 0.97392 0.98920 1.20976 0.99015 0.93207 1.00362 1.21099 0.96567 0.95827 0.99982 1.21110 0.93021 0.99423 1.00980 1.21136 0.99086 0.93417 1.00183 1.21076 0.96010 0.95811 0.99862 0.88892 0.96963 0.94960 0.92605 0.94124 0.91383 0.92752 0.89922 0.92895 0.92180 0.85196 0.84876 0.86300 0.86239 0.86416 0.86288 0.86046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.04 37.15 0.34 -3.11 16 2 C 0.25 5.90 1.91 -69.08 -0.13 5.76 16 3 H 0.06 1.33 4.86 -51.93 -0.25 1.07 16 4 C -0.53 -13.36 8.31 -34.44 -0.29 -13.65 16 5 H 0.06 1.57 7.44 -52.49 -0.39 1.18 16 6 C 0.07 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -23.40 11.32 55.43 0.63 -22.78 16 8 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.60 -12.98 2.75 -175.26 -0.48 -13.46 16 13 C 0.10 2.06 9.35 59.85 0.56 2.61 16 14 C 0.52 11.04 6.52 -10.98 -0.07 10.97 16 15 O -0.56 -12.87 15.38 5.56 0.09 -12.78 16 16 C -0.09 -1.65 1.59 -91.77 -0.15 -1.79 16 17 H 0.09 1.70 6.62 -51.93 -0.34 1.36 16 18 C -0.14 -2.45 8.27 37.16 0.31 -2.14 16 19 C 0.15 2.27 2.12 -68.86 -0.15 2.13 16 20 H 0.09 1.54 7.77 -51.93 -0.40 1.13 16 21 N -0.83 -11.91 8.36 -5.65 -0.05 -11.95 16 22 C -0.11 -1.42 4.06 -104.63 -0.42 -1.84 16 23 C -0.12 -1.47 9.30 -39.58 -0.37 -1.83 16 24 C -0.12 -1.33 10.05 -39.59 -0.40 -1.73 16 25 C -0.13 -1.37 10.05 -39.59 -0.40 -1.77 16 26 C -0.12 -1.33 10.05 -39.59 -0.40 -1.73 16 27 C -0.11 -1.34 8.88 -39.59 -0.35 -1.69 16 28 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 29 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.03 0.71 6.94 -51.93 -0.36 0.35 16 31 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 32 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16 33 H 0.07 1.33 6.77 -51.93 -0.35 0.98 16 34 H 0.05 1.06 7.53 -51.93 -0.39 0.67 16 35 H 0.08 1.65 7.15 -51.93 -0.37 1.28 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.96 7.05 -51.93 -0.37 0.59 16 38 H 0.33 4.47 7.34 -39.29 -0.29 4.18 16 39 H 0.34 4.19 9.06 -39.29 -0.36 3.83 16 40 H 0.12 1.39 6.66 -52.49 -0.35 1.04 16 41 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 43 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 44 H 0.12 1.37 8.04 -52.48 -0.42 0.95 16 LS Contribution 349.64 15.07 5.27 5.27 Total: -1.00 -28.67 349.64 -8.21 -36.89 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -6.63 Total: 11.78 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -2.01 Total: -8.20 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.10 Total: -48.19 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.09 Total: -12.78 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.67 -8.21 -36.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226828059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.922 kcal (2) G-P(sol) polarization free energy of solvation -28.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds