Wall clock time and date at job start Tue Mar 31 2020 08:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.47733 * 2 1 4 4 C 1.50700 * 109.47132 * 120.00665 * 2 1 3 5 5 H 1.07998 * 120.00408 * 119.99956 * 4 2 1 6 6 C 1.37879 * 119.99723 * 299.99477 * 4 2 1 7 7 N 1.31514 * 119.99951 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00093 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47246 * 59.99932 * 8 6 4 10 10 H 1.48497 * 109.47318 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47245 * 300.00170 * 8 6 4 12 12 N 1.46507 * 109.47054 * 240.00298 * 2 1 3 13 13 C 1.46502 * 119.99875 * 294.19130 * 12 2 1 14 14 C 1.34775 * 120.00224 * 114.19492 * 12 2 1 15 15 O 1.21272 * 120.00239 * 183.66617 * 14 12 2 16 16 C 1.50704 * 119.99631 * 3.65807 * 14 12 2 17 17 H 1.08995 * 109.47208 * 319.06219 * 16 14 12 18 18 C 1.52998 * 109.47244 * 79.06092 * 16 14 12 19 19 C 1.53008 * 109.46995 * 199.06224 * 16 14 12 20 20 H 1.09001 * 109.46829 * 300.00363 * 19 16 14 21 21 N 1.46898 * 109.47050 * 59.99882 * 19 16 14 22 22 C 1.50694 * 109.46973 * 180.02562 * 19 16 14 23 23 C 1.38237 * 119.99974 * 279.72621 * 22 19 16 24 24 C 1.38237 * 119.99824 * 179.79352 * 23 22 19 25 25 C 1.38226 * 119.99942 * 0.43582 * 24 23 22 26 26 C 1.38236 * 120.00094 * 359.81633 * 25 24 23 27 27 C 1.38226 * 120.00002 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.47187 * 299.99706 * 1 2 3 29 29 H 1.09001 * 109.47313 * 59.99950 * 1 2 3 30 30 H 1.09001 * 109.47186 * 179.97438 * 1 2 3 31 31 H 0.97005 * 119.99905 * 179.97438 * 7 6 4 32 32 H 1.09008 * 109.47083 * 264.78420 * 13 12 2 33 33 H 1.08996 * 109.47046 * 24.78190 * 13 12 2 34 34 H 1.08998 * 109.47077 * 144.78921 * 13 12 2 35 35 H 1.08998 * 109.47356 * 306.13206 * 18 16 14 36 36 H 1.09001 * 109.46925 * 66.13286 * 18 16 14 37 37 H 1.08994 * 109.47375 * 186.12873 * 18 16 14 38 38 H 1.00903 * 110.99888 * 59.99835 * 21 19 16 39 39 H 1.00896 * 111.00381 * 183.95431 * 21 19 16 40 40 H 1.07999 * 119.99818 * 359.97438 * 23 22 19 41 41 H 1.08001 * 119.99845 * 180.27298 * 24 23 22 42 42 H 1.08002 * 120.00266 * 179.83704 * 25 24 23 43 43 H 1.08009 * 120.00044 * 179.97438 * 26 25 24 44 44 H 1.08006 * 120.00105 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7106 1.2304 5 1 2.6531 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3224 -1.1198 4.0079 9 1 3.8074 -1.1193 4.0076 10 1 1.8269 -0.4202 5.2204 11 1 1.8279 -2.5200 4.0081 12 7 2.0182 -0.6906 -1.1963 13 6 1.7722 -2.1248 -1.3658 14 6 2.6939 -0.0065 -2.1407 15 8 3.0401 -0.5627 -3.1612 16 6 3.0189 1.4497 -1.9286 17 1 2.1625 1.9512 -1.4778 18 6 4.2286 1.5723 -1.0000 19 6 3.3411 2.1016 -3.2749 20 1 4.1975 1.6001 -3.7257 21 7 2.1796 1.9839 -4.1664 22 6 3.6667 3.5576 -3.0627 23 6 2.6473 4.4781 -2.9060 24 6 2.9461 5.8131 -2.7072 25 6 4.2640 6.2288 -2.6740 26 6 5.2832 5.3091 -2.8358 27 6 4.9846 3.9736 -3.0304 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7082 1.1607 3.4845 32 1 2.6364 -2.6862 -1.0105 33 1 0.8912 -2.4126 -0.7922 34 1 1.6062 -2.3427 -2.4208 35 1 4.0403 1.0148 -0.0825 36 1 5.1104 1.1675 -1.4967 37 1 4.3970 2.6219 -0.7593 38 1 1.3720 2.4413 -3.7705 39 1 2.3889 2.3495 -5.0832 40 1 1.6176 4.1538 -2.9361 41 1 2.1498 6.5316 -2.5804 42 1 4.4974 7.2722 -2.5212 43 1 6.3129 5.6341 -2.8103 44 1 5.7809 3.2551 -3.1572 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226828059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:08 Heat of formation + Delta-G solvation = -30.209265 kcal Electronic energy + Delta-G solvation = -24107.844063 eV Core-core repulsion = 20831.096793 eV Total energy + Delta-G solvation = -3276.747271 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.28392 -40.06571 -37.34847 -36.66910 -34.48376 -33.00548 -31.76799 -31.04167 -30.93730 -27.97836 -27.24601 -26.15199 -24.32077 -23.40344 -22.96900 -21.42310 -19.60368 -18.45938 -18.25446 -17.53732 -17.06301 -16.71803 -16.18675 -16.01318 -15.88597 -15.68967 -15.10179 -14.74876 -14.50889 -14.41454 -14.17060 -13.98444 -13.52489 -13.41367 -13.19948 -13.16176 -12.89876 -12.83365 -12.70770 -12.47913 -12.45393 -12.19614 -12.13596 -11.99696 -11.92444 -11.71682 -11.15497 -10.53674 -10.38744 -9.85038 -9.77230 -9.43490 -9.25377 -8.11577 -6.24995 0.43586 0.51921 1.44841 1.46394 1.52834 1.94636 2.37911 2.53381 2.90337 3.17074 3.51384 3.67170 3.94751 4.01466 4.10552 4.16721 4.26788 4.31630 4.44797 4.57813 4.63850 4.67603 4.71292 4.73396 4.81338 4.87857 4.97114 4.98873 5.06488 5.10750 5.11149 5.18928 5.29020 5.43402 5.58590 5.61585 5.63826 5.68339 5.81066 5.99420 6.13135 6.24059 6.26148 6.59936 6.74543 6.93403 7.41647 7.56323 8.91602 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.016040 B = 0.005104 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.266828 B = 5484.264084 C = 6331.450745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.260 3.740 3 H 0.045 0.955 4 C -0.537 4.537 5 H 0.052 0.948 6 C 0.029 3.971 7 N -0.908 5.908 8 Si 0.950 3.050 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.274 1.274 12 N -0.603 5.603 13 C 0.102 3.898 14 C 0.520 3.480 15 O -0.580 6.580 16 C -0.086 4.086 17 H 0.082 0.918 18 C -0.131 4.131 19 C 0.163 3.837 20 H 0.082 0.918 21 N -0.836 5.836 22 C -0.119 4.119 23 C -0.129 4.129 24 C -0.124 4.124 25 C -0.127 4.127 26 C -0.123 4.123 27 C -0.120 4.120 28 H 0.074 0.926 29 H 0.024 0.976 30 H 0.032 0.968 31 H 0.265 0.735 32 H 0.040 0.960 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.340 0.660 39 H 0.350 0.650 40 H 0.121 0.879 41 H 0.138 0.862 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.563 9.905 -8.706 13.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.159 3.841 3 H 0.063 0.937 4 C -0.576 4.576 5 H 0.070 0.930 6 C -0.171 4.171 7 N -0.547 5.547 8 Si 0.776 3.224 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.199 1.199 12 N -0.334 5.334 13 C -0.041 4.041 14 C 0.309 3.691 15 O -0.461 6.461 16 C -0.107 4.107 17 H 0.100 0.900 18 C -0.189 4.189 19 C 0.050 3.950 20 H 0.100 0.900 21 N -0.366 5.366 22 C -0.121 4.121 23 C -0.147 4.147 24 C -0.142 4.142 25 C -0.145 4.145 26 C -0.141 4.141 27 C -0.139 4.139 28 H 0.093 0.907 29 H 0.043 0.957 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.154 0.846 39 H 0.164 0.836 40 H 0.139 0.861 41 H 0.156 0.844 42 H 0.161 0.839 43 H 0.160 0.840 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.688 8.902 -8.980 13.486 hybrid contribution 0.039 0.379 1.112 1.176 sum 4.727 9.281 -7.868 13.053 Atomic orbital electron populations 1.21982 0.98013 0.99667 1.00298 1.18851 0.91327 0.92925 0.81007 0.93702 1.21463 1.31835 1.13061 0.91199 0.93012 1.25469 0.94996 0.95530 1.01150 1.69941 1.36820 1.23468 1.24441 0.85734 0.78622 0.78844 0.79168 1.20168 1.20849 1.19944 1.48244 1.54258 1.09536 1.21330 1.21312 1.00763 0.81341 1.00713 1.20646 0.77128 0.89371 0.81993 1.90548 1.55417 1.71652 1.28499 1.21179 1.00385 0.92148 0.97022 0.90024 1.21636 0.95963 1.02804 0.98522 1.20010 0.94209 0.89462 0.91284 0.90036 1.58784 1.05885 1.65861 1.06070 1.20744 0.94480 0.96141 1.00721 1.21105 0.99008 0.93853 1.00771 1.21392 0.97663 0.95640 0.99491 1.21482 0.92646 1.00753 0.99655 1.21446 1.00512 0.92838 0.99297 1.21246 0.95728 0.96816 1.00085 0.90726 0.95668 0.94912 0.92567 0.94098 0.90998 0.92233 0.92894 0.91966 0.90781 0.84619 0.83600 0.86147 0.84387 0.83871 0.83977 0.85523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.41 9.04 71.98 0.65 -5.76 16 2 C 0.26 12.20 1.91 44.24 0.08 12.29 16 3 H 0.05 2.21 4.86 -2.39 -0.01 2.20 16 4 C -0.54 -27.35 8.31 25.60 0.21 -27.14 16 5 H 0.05 2.68 7.44 -2.91 -0.02 2.66 16 6 C 0.03 1.49 5.30 84.66 0.45 1.94 16 7 N -0.91 -47.75 11.32 21.45 0.24 -47.51 16 8 Si 0.95 41.20 29.54 68.60 2.03 43.22 16 9 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 10 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 12 N -0.60 -26.32 2.75 -826.80 -2.28 -28.60 16 13 C 0.10 4.09 9.35 127.77 1.19 5.29 16 14 C 0.52 21.95 6.52 87.66 0.57 22.52 16 15 O -0.58 -26.65 15.38 -3.00 -0.05 -26.69 16 16 C -0.09 -3.05 1.59 -11.54 -0.02 -3.07 16 17 H 0.08 3.07 6.62 -2.39 -0.02 3.06 16 18 C -0.13 -4.53 8.27 71.98 0.60 -3.93 16 19 C 0.16 4.87 2.12 44.17 0.09 4.96 16 20 H 0.08 2.64 7.77 -2.39 -0.02 2.62 16 21 N -0.84 -23.82 8.36 -171.80 -1.44 -25.25 16 22 C -0.12 -3.03 4.06 -19.87 -0.08 -3.11 16 23 C -0.13 -3.08 9.30 22.27 0.21 -2.87 16 24 C -0.12 -2.55 10.05 22.27 0.22 -2.33 16 25 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 26 C -0.12 -2.41 10.05 22.27 0.22 -2.19 16 27 C -0.12 -2.77 8.88 22.27 0.20 -2.57 16 28 H 0.07 3.70 6.07 -2.39 -0.01 3.68 16 29 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.03 1.44 6.94 -2.39 -0.02 1.42 16 31 H 0.26 13.38 8.31 -92.70 -0.77 12.61 16 32 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.07 2.79 6.77 -2.39 -0.02 2.77 16 34 H 0.06 2.31 7.53 -2.39 -0.02 2.29 16 35 H 0.05 2.14 7.15 -2.39 -0.02 2.12 16 36 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.07 2.32 7.05 -2.39 -0.02 2.30 16 38 H 0.34 8.96 7.34 -89.69 -0.66 8.30 16 39 H 0.35 8.45 9.06 -89.70 -0.81 7.64 16 40 H 0.12 2.73 6.66 -2.91 -0.02 2.71 16 41 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 42 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 43 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 44 H 0.13 2.70 8.04 -2.91 -0.02 2.67 16 Total: -1.00 -59.59 349.64 2.88 -56.71 By element: Atomic # 1 Polarization: 36.72 SS G_CDS: -0.46 Total: 36.26 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: 4.83 Total: -8.15 kcal Atomic # 7 Polarization: -97.89 SS G_CDS: -3.47 Total: -101.36 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.05 Total: -26.69 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.22 kcal Total: -59.59 2.88 -56.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226828059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.501 kcal (2) G-P(sol) polarization free energy of solvation -59.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds