Wall clock time and date at job start Tue Mar 31 2020 08:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47238 * 2 1 4 4 C 1.50693 * 109.47424 * 239.99807 * 2 1 3 5 5 H 1.08004 * 120.00228 * 239.99850 * 4 2 1 6 6 C 1.37878 * 120.00353 * 60.00115 * 4 2 1 7 7 N 1.31519 * 119.99450 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00128 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47093 * 89.99738 * 8 6 4 10 10 H 1.48500 * 109.46794 * 209.99550 * 8 6 4 11 11 H 1.48498 * 109.47032 * 329.99651 * 8 6 4 12 12 N 1.46504 * 109.46780 * 119.99479 * 2 1 3 13 13 C 1.46493 * 120.00016 * 54.26757 * 12 2 1 14 14 C 1.34783 * 119.99829 * 234.26122 * 12 2 1 15 15 O 1.21281 * 119.99749 * 183.92195 * 14 12 2 16 16 C 1.50694 * 119.99838 * 3.92081 * 14 12 2 17 17 H 1.08999 * 109.47489 * 311.68328 * 16 14 12 18 18 C 1.53005 * 109.47158 * 71.69200 * 16 14 12 19 19 C 1.53009 * 109.46956 * 191.68394 * 16 14 12 20 20 H 1.08999 * 109.46967 * 300.00253 * 19 16 14 21 21 N 1.46900 * 109.46887 * 60.00134 * 19 16 14 22 22 C 1.50694 * 109.46956 * 180.02562 * 19 16 14 23 23 C 1.38235 * 120.00259 * 279.72976 * 22 19 16 24 24 C 1.38240 * 119.99818 * 179.79088 * 23 22 19 25 25 C 1.38232 * 120.00284 * 0.44017 * 24 23 22 26 26 C 1.38238 * 119.99619 * 359.81180 * 25 24 23 27 27 C 1.38233 * 120.00314 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47600 * 300.00006 * 1 2 3 29 29 H 1.08997 * 109.46676 * 60.00642 * 1 2 3 30 30 H 1.09006 * 109.46654 * 180.02562 * 1 2 3 31 31 H 0.96999 * 119.99375 * 180.02562 * 7 6 4 32 32 H 1.08996 * 109.47074 * 264.70799 * 13 12 2 33 33 H 1.09010 * 109.47378 * 144.70613 * 13 12 2 34 34 H 1.09002 * 109.47473 * 24.71071 * 13 12 2 35 35 H 1.09003 * 109.47181 * 184.03563 * 18 16 14 36 36 H 1.09005 * 109.46492 * 304.03002 * 18 16 14 37 37 H 1.08994 * 109.47421 * 64.03343 * 18 16 14 38 38 H 1.00900 * 111.00145 * 296.05305 * 21 19 16 39 39 H 1.00903 * 110.99640 * 59.99578 * 21 19 16 40 40 H 1.08002 * 119.99955 * 359.97438 * 23 22 19 41 41 H 1.08002 * 119.99576 * 180.27277 * 24 23 22 42 42 H 1.07997 * 120.00206 * 179.83546 * 25 24 23 43 43 H 1.08004 * 119.99834 * 179.97438 * 26 25 24 44 44 H 1.07997 * 119.99943 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3216 -1.1205 -4.0078 9 1 1.3431 -2.1619 -4.4117 10 1 2.4868 -0.1416 -5.1122 11 1 3.6296 -1.7584 -3.7119 12 7 2.0183 -0.6905 1.1963 13 6 1.5639 -2.0511 1.4934 14 6 2.8857 -0.0740 2.0234 15 8 3.3448 -0.6703 2.9745 16 6 3.2850 1.3562 1.7664 17 1 3.5632 1.4732 0.7190 18 6 2.1083 2.2799 2.0879 19 6 4.4766 1.7205 2.6544 20 1 4.1983 1.6035 3.7018 21 7 5.6063 0.8336 2.3458 22 6 4.8754 3.1508 2.3978 23 6 5.6503 3.4656 1.2972 24 6 6.0126 4.7783 1.0596 25 6 5.6076 5.7751 1.9275 26 6 4.8370 5.4596 3.0309 27 6 4.4711 4.1475 3.2662 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.7083 1.1607 -3.4844 32 1 0.7215 -2.0102 2.1839 33 1 2.3786 -2.6154 1.9473 34 1 1.2535 -2.5403 0.5701 35 1 2.3725 3.3065 1.8344 36 1 1.2378 1.9747 1.5071 37 1 1.8764 2.2163 3.1510 38 1 5.3856 -0.1249 2.5708 39 1 5.8832 0.9236 1.3797 40 1 5.9703 2.6862 0.6214 41 1 6.6143 5.0247 0.1972 42 1 5.8928 6.8003 1.7432 43 1 4.5209 6.2383 3.7093 44 1 3.8694 3.9011 4.1286 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226828066.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:13 Heat of formation + Delta-G solvation = -17.558970 kcal Electronic energy + Delta-G solvation = -24170.375403 eV Core-core repulsion = 20894.176691 eV Total energy + Delta-G solvation = -3276.198713 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.06616 -38.85502 -35.94104 -35.29282 -32.73407 -31.52643 -30.73199 -30.10861 -29.22692 -26.56639 -25.35833 -24.81387 -23.05123 -22.37926 -21.39260 -20.25101 -18.05241 -17.27630 -16.68086 -16.34565 -15.42755 -15.29954 -14.92603 -14.72645 -14.53082 -14.19257 -13.91627 -13.35268 -13.22750 -12.97642 -12.85624 -12.49964 -12.37643 -11.93686 -11.74701 -11.72934 -11.46129 -11.37856 -11.15546 -10.98362 -10.95905 -10.80802 -10.72465 -10.67621 -10.34859 -10.21562 -9.42933 -9.03776 -8.76339 -8.69673 -8.59201 -8.26851 -7.70999 -6.24167 -4.33342 1.50192 1.55199 3.16897 3.24220 3.25564 3.30841 3.82362 3.99661 4.26733 4.81873 4.96394 5.05350 5.06588 5.10743 5.15557 5.26026 5.37543 5.56360 5.66230 5.69853 5.76136 5.92600 6.08276 6.10262 6.13647 6.17617 6.20852 6.34210 6.40559 6.46630 6.55809 6.58730 6.63811 6.67587 6.82354 6.83676 7.13394 7.13795 7.33039 7.45181 7.59722 7.77986 7.82417 8.04971 8.35960 8.68539 8.92265 9.35362 10.80067 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.014862 B = 0.005372 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.597749 B = 5211.254091 C = 6053.434012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.249 3.751 3 H 0.060 0.940 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.897 3.103 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.587 5.587 13 C 0.094 3.906 14 C 0.513 3.487 15 O -0.577 6.577 16 C -0.138 4.138 17 H 0.101 0.899 18 C -0.141 4.141 19 C 0.152 3.848 20 H 0.092 0.908 21 N -0.841 5.841 22 C -0.059 4.059 23 C -0.104 4.104 24 C -0.119 4.119 25 C -0.129 4.129 26 C -0.122 4.122 27 C -0.113 4.113 28 H 0.013 0.987 29 H 0.095 0.905 30 H 0.033 0.967 31 H 0.265 0.735 32 H 0.039 0.961 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.357 0.643 39 H 0.333 0.667 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.307 6.603 6.808 10.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.149 3.851 3 H 0.077 0.923 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.725 3.275 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.316 5.316 13 C -0.050 4.050 14 C 0.301 3.699 15 O -0.459 6.459 16 C -0.161 4.161 17 H 0.119 0.881 18 C -0.199 4.199 19 C 0.039 3.961 20 H 0.110 0.890 21 N -0.372 5.372 22 C -0.059 4.059 23 C -0.122 4.122 24 C -0.137 4.137 25 C -0.147 4.147 26 C -0.140 4.140 27 C -0.132 4.132 28 H 0.032 0.968 29 H 0.113 0.887 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.174 0.826 39 H 0.146 0.854 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.834 6.787 7.672 11.327 hybrid contribution -0.563 -0.904 -1.817 2.106 sum 4.271 5.883 5.856 9.335 Atomic orbital electron populations 1.22125 0.97921 0.99985 1.00872 1.19181 0.91625 0.93647 0.80681 0.92278 1.21361 1.32176 1.13371 0.90177 0.92136 1.24882 0.94723 0.94902 0.99001 1.69854 1.36017 1.22515 1.24046 0.86499 0.79340 0.79421 0.82247 1.20508 1.21019 1.19855 1.48265 1.43201 1.15144 1.25020 1.21394 0.98604 0.84129 1.00841 1.20452 0.78909 0.88359 0.82148 1.90561 1.56506 1.67534 1.31286 1.22106 0.98066 0.93183 1.02714 0.88123 1.21797 0.97520 0.99029 1.01559 1.20134 0.87877 0.88594 0.99483 0.89039 1.59044 1.37815 1.13109 1.27270 1.19771 0.96714 0.94671 0.94762 1.20957 0.97726 0.96338 0.97183 1.21106 1.00277 0.93012 0.99337 1.21075 0.99192 0.99008 0.95414 1.21056 0.98884 0.96225 0.97861 1.20994 1.00205 0.92639 0.99317 0.96804 0.88679 0.94800 0.92506 0.94220 0.92344 0.90564 0.91638 0.90972 0.92801 0.82639 0.85432 0.86192 0.86324 0.86546 0.86396 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 8.71 37.16 0.32 -2.98 16 2 C 0.25 5.61 1.69 -69.08 -0.12 5.49 16 3 H 0.06 1.39 4.56 -51.93 -0.24 1.15 16 4 C -0.53 -13.26 8.09 -34.44 -0.28 -13.54 16 5 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 6 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -22.94 11.32 55.43 0.63 -22.31 16 8 Si 0.90 19.91 29.54 -169.99 -5.02 14.89 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 12 N -0.59 -12.11 2.75 -175.27 -0.48 -12.60 16 13 C 0.09 1.77 9.30 59.84 0.56 2.32 16 14 C 0.51 10.20 6.55 -10.99 -0.07 10.13 16 15 O -0.58 -12.21 13.99 5.56 0.08 -12.14 16 16 C -0.14 -2.39 1.59 -91.77 -0.15 -2.53 16 17 H 0.10 1.90 7.06 -51.93 -0.37 1.54 16 18 C -0.14 -2.27 8.26 37.16 0.31 -1.97 16 19 C 0.15 2.39 2.24 -68.86 -0.15 2.24 16 20 H 0.09 1.52 7.83 -51.93 -0.41 1.11 16 21 N -0.84 -13.35 8.98 -5.65 -0.05 -13.40 16 22 C -0.06 -0.85 4.06 -104.63 -0.42 -1.27 16 23 C -0.10 -1.45 9.30 -39.58 -0.37 -1.82 16 24 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 25 C -0.13 -1.49 10.05 -39.58 -0.40 -1.89 16 26 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 27 C -0.11 -1.47 8.82 -39.58 -0.35 -1.82 16 28 H 0.01 0.26 7.68 -51.93 -0.40 -0.13 16 29 H 0.09 2.29 6.07 -51.93 -0.32 1.97 16 30 H 0.03 0.72 7.38 -51.93 -0.38 0.33 16 31 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 1.08 7.53 -51.92 -0.39 0.69 16 34 H 0.08 1.44 7.30 -51.93 -0.38 1.06 16 35 H 0.06 0.99 6.91 -51.93 -0.36 0.63 16 36 H 0.07 1.28 5.68 -51.93 -0.30 0.98 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.36 6.19 6.88 -39.29 -0.27 5.92 16 39 H 0.33 5.00 7.34 -39.29 -0.29 4.71 16 40 H 0.12 1.62 6.66 -52.49 -0.35 1.27 16 41 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 42 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 44 H 0.12 1.40 8.04 -52.49 -0.42 0.97 16 LS Contribution 345.44 15.07 5.21 5.21 Total: -1.00 -26.90 345.44 -8.17 -35.08 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -6.52 Total: 15.01 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -2.01 Total: -9.74 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.09 Total: -48.31 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.08 Total: -12.14 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -26.90 -8.17 -35.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226828066.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.518 kcal (2) G-P(sol) polarization free energy of solvation -26.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds