Wall clock time and date at job start Tue Mar 31 2020 08:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47238 * 2 1 4 4 C 1.50693 * 109.47424 * 239.99807 * 2 1 3 5 5 H 1.08004 * 120.00228 * 239.99850 * 4 2 1 6 6 C 1.37878 * 120.00353 * 60.00115 * 4 2 1 7 7 N 1.31519 * 119.99450 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00128 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47093 * 89.99738 * 8 6 4 10 10 H 1.48500 * 109.46794 * 209.99550 * 8 6 4 11 11 H 1.48498 * 109.47032 * 329.99651 * 8 6 4 12 12 N 1.46504 * 109.46780 * 119.99479 * 2 1 3 13 13 C 1.46493 * 120.00016 * 54.26757 * 12 2 1 14 14 C 1.34783 * 119.99829 * 234.26122 * 12 2 1 15 15 O 1.21281 * 119.99749 * 183.92195 * 14 12 2 16 16 C 1.50694 * 119.99838 * 3.92081 * 14 12 2 17 17 H 1.08999 * 109.47489 * 311.68328 * 16 14 12 18 18 C 1.53005 * 109.47158 * 71.69200 * 16 14 12 19 19 C 1.53009 * 109.46956 * 191.68394 * 16 14 12 20 20 H 1.08999 * 109.46967 * 300.00253 * 19 16 14 21 21 N 1.46900 * 109.46887 * 60.00134 * 19 16 14 22 22 C 1.50694 * 109.46956 * 180.02562 * 19 16 14 23 23 C 1.38235 * 120.00259 * 279.72976 * 22 19 16 24 24 C 1.38240 * 119.99818 * 179.79088 * 23 22 19 25 25 C 1.38232 * 120.00284 * 0.44017 * 24 23 22 26 26 C 1.38238 * 119.99619 * 359.81180 * 25 24 23 27 27 C 1.38233 * 120.00314 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47600 * 300.00006 * 1 2 3 29 29 H 1.08997 * 109.46676 * 60.00642 * 1 2 3 30 30 H 1.09006 * 109.46654 * 180.02562 * 1 2 3 31 31 H 0.96999 * 119.99375 * 180.02562 * 7 6 4 32 32 H 1.08996 * 109.47074 * 264.70799 * 13 12 2 33 33 H 1.09010 * 109.47378 * 144.70613 * 13 12 2 34 34 H 1.09002 * 109.47473 * 24.71071 * 13 12 2 35 35 H 1.09003 * 109.47181 * 184.03563 * 18 16 14 36 36 H 1.09005 * 109.46492 * 304.03002 * 18 16 14 37 37 H 1.08994 * 109.47421 * 64.03343 * 18 16 14 38 38 H 1.00900 * 111.00145 * 296.05305 * 21 19 16 39 39 H 1.00903 * 110.99640 * 59.99578 * 21 19 16 40 40 H 1.08002 * 119.99955 * 359.97438 * 23 22 19 41 41 H 1.08002 * 119.99576 * 180.27277 * 24 23 22 42 42 H 1.07997 * 120.00206 * 179.83546 * 25 24 23 43 43 H 1.08004 * 119.99834 * 179.97438 * 26 25 24 44 44 H 1.07997 * 119.99943 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3216 -1.1205 -4.0078 9 1 1.3431 -2.1619 -4.4117 10 1 2.4868 -0.1416 -5.1122 11 1 3.6296 -1.7584 -3.7119 12 7 2.0183 -0.6905 1.1963 13 6 1.5639 -2.0511 1.4934 14 6 2.8857 -0.0740 2.0234 15 8 3.3448 -0.6703 2.9745 16 6 3.2850 1.3562 1.7664 17 1 3.5632 1.4732 0.7190 18 6 2.1083 2.2799 2.0879 19 6 4.4766 1.7205 2.6544 20 1 4.1983 1.6035 3.7018 21 7 5.6063 0.8336 2.3458 22 6 4.8754 3.1508 2.3978 23 6 5.6503 3.4656 1.2972 24 6 6.0126 4.7783 1.0596 25 6 5.6076 5.7751 1.9275 26 6 4.8370 5.4596 3.0309 27 6 4.4711 4.1475 3.2662 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.7083 1.1607 -3.4844 32 1 0.7215 -2.0102 2.1839 33 1 2.3786 -2.6154 1.9473 34 1 1.2535 -2.5403 0.5701 35 1 2.3725 3.3065 1.8344 36 1 1.2378 1.9747 1.5071 37 1 1.8764 2.2163 3.1510 38 1 5.3856 -0.1249 2.5708 39 1 5.8832 0.9236 1.3797 40 1 5.9703 2.6862 0.6214 41 1 6.6143 5.0247 0.1972 42 1 5.8928 6.8003 1.7432 43 1 4.5209 6.2383 3.7093 44 1 3.8694 3.9011 4.1286 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226828066.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:12 Heat of formation + Delta-G solvation = -32.110653 kcal Electronic energy + Delta-G solvation = -24171.006412 eV Core-core repulsion = 20894.176691 eV Total energy + Delta-G solvation = -3276.829721 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.48137 -40.04244 -37.53440 -36.68427 -34.59440 -32.83731 -31.72821 -31.17005 -31.00343 -28.10009 -27.25849 -26.06260 -24.37406 -23.38881 -23.04635 -21.43135 -19.63730 -18.59006 -18.51861 -17.57490 -17.03466 -16.67779 -16.33682 -16.15565 -15.81612 -15.49087 -15.20592 -14.93909 -14.51069 -14.26800 -14.13074 -13.91053 -13.69151 -13.43541 -13.17103 -13.03619 -12.99512 -12.91675 -12.84381 -12.76370 -12.45808 -12.27858 -12.19569 -11.97756 -11.86347 -11.72101 -11.25228 -10.67011 -10.48681 -9.83203 -9.72555 -9.46450 -9.38722 -8.16637 -6.31528 0.51333 0.58784 1.40015 1.43544 1.50960 1.68742 2.28687 2.45157 2.94998 3.11572 3.53619 3.65245 3.83853 4.00328 4.11748 4.20419 4.27084 4.32926 4.40905 4.55012 4.60732 4.63533 4.67189 4.72138 4.81915 4.85670 4.90322 4.92225 5.03206 5.03654 5.15421 5.17347 5.24558 5.39295 5.54221 5.63500 5.69314 5.71425 5.77967 5.96749 6.15249 6.18361 6.20228 6.46847 6.62482 6.81463 7.26610 7.42237 8.85896 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.014862 B = 0.005372 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.597749 B = 5211.254091 C = 6053.434012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.257 3.743 3 H 0.050 0.950 4 C -0.544 4.544 5 H 0.049 0.951 6 C 0.031 3.969 7 N -0.906 5.906 8 Si 0.951 3.049 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.276 1.276 12 N -0.594 5.594 13 C 0.093 3.907 14 C 0.510 3.490 15 O -0.590 6.590 16 C -0.128 4.128 17 H 0.082 0.918 18 C -0.132 4.132 19 C 0.161 3.839 20 H 0.083 0.917 21 N -0.839 5.839 22 C -0.076 4.076 23 C -0.123 4.123 24 C -0.128 4.128 25 C -0.128 4.128 26 C -0.122 4.122 27 C -0.122 4.122 28 H 0.029 0.971 29 H 0.074 0.926 30 H 0.034 0.966 31 H 0.266 0.734 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.348 0.652 39 H 0.336 0.664 40 H 0.114 0.886 41 H 0.136 0.864 42 H 0.144 0.856 43 H 0.146 0.854 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.584 7.844 7.149 11.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.155 3.845 3 H 0.067 0.933 4 C -0.583 4.583 5 H 0.067 0.933 6 C -0.170 4.170 7 N -0.544 5.544 8 Si 0.777 3.223 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.201 1.201 12 N -0.323 5.323 13 C -0.050 4.050 14 C 0.299 3.701 15 O -0.473 6.473 16 C -0.151 4.151 17 H 0.100 0.900 18 C -0.190 4.190 19 C 0.048 3.952 20 H 0.101 0.899 21 N -0.370 5.370 22 C -0.076 4.076 23 C -0.141 4.141 24 C -0.145 4.145 25 C -0.146 4.146 26 C -0.140 4.140 27 C -0.140 4.140 28 H 0.048 0.952 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.163 0.837 39 H 0.150 0.850 40 H 0.132 0.868 41 H 0.154 0.846 42 H 0.162 0.838 43 H 0.164 0.836 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.113 8.028 8.018 12.445 hybrid contribution -0.622 -1.264 -1.890 2.358 sum 4.492 6.764 6.128 10.172 Atomic orbital electron populations 1.21960 0.97392 0.99926 1.00560 1.18954 0.91873 0.93010 0.80623 0.93273 1.21542 1.32133 1.13170 0.91425 0.93275 1.25468 0.94927 0.95489 1.01164 1.69942 1.36627 1.23306 1.24529 0.85666 0.78658 0.78483 0.79484 1.20157 1.20731 1.20076 1.48286 1.43543 1.15776 1.24678 1.21457 0.99163 0.83349 1.01011 1.20873 0.78327 0.89221 0.81706 1.90549 1.56811 1.68104 1.31812 1.22048 0.99274 0.91854 1.01944 0.89980 1.21724 0.96142 0.99190 1.01992 1.20032 0.87052 0.89686 0.98401 0.89857 1.59051 1.37896 1.12471 1.27555 1.19697 0.98109 0.93965 0.95859 1.21060 0.98471 0.97214 0.97353 1.21380 1.00376 0.92567 1.00219 1.21461 0.98221 1.00139 0.94762 1.21414 0.98119 0.96255 0.98202 1.21203 1.00378 0.93049 0.99405 0.95230 0.90752 0.94652 0.92450 0.92701 0.92215 0.90910 0.90528 0.92694 0.91544 0.83697 0.85049 0.86789 0.84648 0.83785 0.83644 0.85197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.10 8.71 71.98 0.63 -5.47 16 2 C 0.26 11.61 1.69 44.24 0.07 11.69 16 3 H 0.05 2.34 4.56 -2.39 -0.01 2.33 16 4 C -0.54 -27.27 8.09 25.60 0.21 -27.06 16 5 H 0.05 2.53 7.81 -2.91 -0.02 2.50 16 6 C 0.03 1.54 5.30 84.65 0.45 1.99 16 7 N -0.91 -46.91 11.32 21.45 0.24 -46.67 16 8 Si 0.95 40.71 29.54 68.60 2.03 42.74 16 9 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 10 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 12 N -0.59 -24.49 2.75 -826.80 -2.28 -26.76 16 13 C 0.09 3.47 9.30 127.77 1.19 4.66 16 14 C 0.51 20.28 6.55 87.65 0.57 20.85 16 15 O -0.59 -24.92 13.99 -3.03 -0.04 -24.96 16 16 C -0.13 -4.46 1.59 -11.54 -0.02 -4.47 16 17 H 0.08 3.18 7.06 -2.39 -0.02 3.16 16 18 C -0.13 -4.19 8.26 71.98 0.59 -3.60 16 19 C 0.16 5.06 2.24 44.17 0.10 5.16 16 20 H 0.08 2.75 7.83 -2.39 -0.02 2.73 16 21 N -0.84 -26.92 8.98 -171.80 -1.54 -28.46 16 22 C -0.08 -2.13 4.06 -19.87 -0.08 -2.21 16 23 C -0.12 -3.37 9.30 22.27 0.21 -3.16 16 24 C -0.13 -2.97 10.05 22.27 0.22 -2.74 16 25 C -0.13 -2.60 10.05 22.27 0.22 -2.38 16 26 C -0.12 -2.51 10.05 22.27 0.22 -2.28 16 27 C -0.12 -2.96 8.82 22.27 0.20 -2.76 16 28 H 0.03 1.15 7.68 -2.39 -0.02 1.13 16 29 H 0.07 3.58 6.07 -2.39 -0.01 3.57 16 30 H 0.03 1.48 7.38 -2.38 -0.02 1.46 16 31 H 0.27 13.21 8.31 -92.71 -0.77 12.44 16 32 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.06 2.19 7.53 -2.38 -0.02 2.17 16 34 H 0.07 2.73 7.30 -2.39 -0.02 2.71 16 35 H 0.08 2.24 6.91 -2.39 -0.02 2.22 16 36 H 0.05 1.92 5.68 -2.38 -0.01 1.91 16 37 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.35 12.23 6.88 -89.69 -0.62 11.61 16 39 H 0.34 10.32 7.34 -89.69 -0.66 9.66 16 40 H 0.11 3.14 6.66 -2.91 -0.02 3.12 16 41 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 42 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 43 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 44 H 0.13 2.79 8.04 -2.91 -0.02 2.77 16 Total: -1.00 -56.05 345.44 2.93 -53.12 By element: Atomic # 1 Polarization: 43.06 SS G_CDS: -0.26 Total: 42.80 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: 4.79 Total: -11.80 kcal Atomic # 7 Polarization: -98.32 SS G_CDS: -3.58 Total: -101.89 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.04 Total: -24.96 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -56.05 2.93 -53.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226828066.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.008 kcal (2) G-P(sol) polarization free energy of solvation -56.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds