Wall clock time and date at job start Tue Mar 31 2020 08:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47399 * 2 1 4 4 C 1.52995 * 109.47288 * 120.01007 * 2 1 3 5 5 N 1.46501 * 109.47019 * 294.99434 * 4 2 1 6 6 C 1.34776 * 120.00204 * 180.02562 * 5 4 2 7 7 O 1.21279 * 119.99759 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00055 * 179.97438 * 6 5 4 9 9 H 1.08993 * 109.47205 * 300.00397 * 8 6 5 10 10 C 1.53003 * 109.46841 * 60.00344 * 8 6 5 11 11 N 1.46492 * 109.46989 * 180.02562 * 8 6 5 12 12 C 1.46498 * 120.00411 * 300.00342 * 11 8 6 13 13 C 1.36942 * 119.99962 * 120.00622 * 11 8 6 14 14 H 1.08002 * 119.99854 * 23.88663 * 13 11 8 15 15 C 1.38811 * 120.00208 * 203.89498 * 13 11 8 16 16 N 1.31621 * 119.99879 * 10.79015 * 15 13 11 17 17 Si 1.86799 * 120.00142 * 190.79461 * 15 13 11 18 18 H 1.48502 * 109.47192 * 89.99433 * 17 15 13 19 19 H 1.48498 * 109.47112 * 209.99284 * 17 15 13 20 20 H 1.48491 * 109.47140 * 329.99512 * 17 15 13 21 21 C 1.50706 * 109.46607 * 240.00608 * 2 1 3 22 22 C 1.38231 * 119.99839 * 299.72842 * 21 2 1 23 23 C 1.38239 * 120.00045 * 179.81317 * 22 21 2 24 24 C 1.38235 * 119.99595 * 0.39029 * 23 22 21 25 25 C 1.38238 * 120.00228 * 359.86194 * 24 23 22 26 26 C 1.38230 * 119.99898 * 119.99695 * 21 2 1 27 27 H 1.09006 * 109.47068 * 299.99409 * 1 2 3 28 28 H 1.08996 * 109.47678 * 59.99254 * 1 2 3 29 29 H 1.08995 * 109.47399 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47045 * 175.00010 * 4 2 1 31 31 H 1.08993 * 109.47625 * 54.99382 * 4 2 1 32 32 H 0.97004 * 119.99615 * 359.97438 * 5 4 2 33 33 H 1.09005 * 109.47192 * 299.99721 * 10 8 6 34 34 H 1.09001 * 109.46986 * 59.99735 * 10 8 6 35 35 H 1.08994 * 109.47281 * 179.97438 * 10 8 6 36 36 H 1.08995 * 109.47185 * 95.01175 * 12 11 8 37 37 H 1.09003 * 109.47490 * 215.01889 * 12 11 8 38 38 H 1.09001 * 109.47036 * 335.01673 * 12 11 8 39 39 H 0.97007 * 119.99958 * 180.02562 * 16 15 13 40 40 H 1.08001 * 120.00514 * 359.97438 * 22 21 2 41 41 H 1.07993 * 120.00373 * 180.22997 * 23 22 21 42 42 H 1.08004 * 120.00168 * 179.83455 * 24 23 22 43 43 H 1.07996 * 119.99820 * 179.97438 * 25 24 23 44 44 H 1.07997 * 120.00400 * 359.97438 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 1.6526 0.0350 2.4423 6 6 1.9966 -0.4135 3.6658 7 8 2.6273 -1.4432 3.7789 8 6 1.5985 0.3650 4.8932 9 1 2.0331 1.3635 4.8470 10 6 0.0737 0.4749 4.9551 11 7 2.0878 -0.3252 6.0892 12 6 1.6466 -1.6919 6.3783 13 6 2.9577 0.3072 6.9369 14 1 2.9921 1.3862 6.9690 15 6 3.7954 -0.4385 7.7549 16 7 3.9103 -1.7367 7.5704 17 14 4.7594 0.4002 9.1175 18 1 3.9535 0.4026 10.3648 19 1 6.0290 -0.3341 9.3498 20 1 5.0619 1.7989 8.7210 21 6 2.0322 -0.7103 -1.2306 22 6 1.7028 -2.0353 -1.4466 23 6 2.1603 -2.6858 -2.5774 24 6 2.9538 -2.0135 -3.4880 25 6 3.2875 -0.6900 -3.2693 26 6 2.8268 -0.0385 -2.1405 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3634 -1.0276 0.0005 30 1 3.1263 -0.7996 1.2054 31 1 1.6054 -1.7199 1.2949 32 1 1.1490 0.8592 2.3518 33 1 -0.2900 0.9886 4.0652 34 1 -0.3609 -0.5237 5.0013 35 1 -0.2143 1.0375 5.8431 36 1 2.3777 -2.3999 5.9884 37 1 1.5528 -1.8230 7.4564 38 1 0.6807 -1.8695 5.9054 39 1 4.4955 -2.2579 8.1423 40 1 1.0859 -2.5617 -0.7333 41 1 1.8999 -3.7199 -2.7480 42 1 3.3135 -2.5224 -4.3701 43 1 3.9078 -0.1649 -3.9806 44 1 3.0874 0.9956 -1.9698 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263904946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:45:05 Heat of formation + Delta-G solvation = 5.958255 kcal Electronic energy + Delta-G solvation = -23001.599993 eV Core-core repulsion = 19726.421064 eV Total energy + Delta-G solvation = -3275.178929 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 10.65 seconds Orbital eigenvalues (eV) -39.82314 -38.90630 -36.16987 -35.08554 -32.96951 -31.89173 -31.06952 -29.57828 -28.93809 -26.41547 -25.85578 -24.08766 -23.30254 -22.63337 -21.29943 -20.23986 -19.14067 -17.02991 -16.82965 -16.25804 -15.75678 -15.31357 -15.06987 -14.69955 -14.56896 -13.89807 -13.82098 -13.63028 -13.45435 -13.10844 -12.90021 -12.75920 -12.48169 -12.25361 -12.08088 -11.77428 -11.51853 -11.36523 -11.21342 -10.98429 -10.82414 -10.77496 -10.68591 -10.49423 -10.31376 -9.90020 -9.79425 -9.07252 -8.96975 -8.81401 -8.50771 -8.40474 -6.65076 -5.62460 -3.12832 1.19073 1.24929 3.41443 3.47133 3.49827 3.57482 3.58827 3.78123 4.53125 4.57010 4.60136 4.84032 4.89850 4.97399 5.01986 5.22614 5.32766 5.39403 5.45470 5.47748 5.60390 5.65929 5.72454 5.82730 5.89004 5.91068 5.94832 6.01898 6.07534 6.16174 6.24922 6.31745 6.36069 6.50230 6.55665 6.74844 6.84158 6.97921 6.99776 7.52664 7.84376 8.05065 8.16659 8.46532 9.10385 9.30741 9.92364 10.41937 11.39638 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.025614 B = 0.003158 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.883141 B = 8864.734931 C = 9217.072860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.064 4.064 3 H 0.083 0.917 4 C 0.129 3.871 5 N -0.746 5.746 6 C 0.484 3.516 7 O -0.514 6.514 8 C 0.156 3.844 9 H 0.085 0.915 10 C -0.154 4.154 11 N -0.571 5.571 12 C 0.168 3.832 13 C -0.265 4.265 14 H 0.069 0.931 15 C 0.007 3.993 16 N -0.893 5.893 17 Si 0.906 3.094 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.279 1.279 21 C -0.071 4.071 22 C -0.111 4.111 23 C -0.119 4.119 24 C -0.126 4.126 25 C -0.121 4.121 26 C -0.115 4.115 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.391 0.609 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.044 0.956 37 H 0.037 0.963 38 H -0.006 1.006 39 H 0.252 0.748 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.633 3.932 -20.687 22.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 H 0.102 0.898 4 C 0.005 3.995 5 N -0.403 5.403 6 C 0.269 3.731 7 O -0.386 6.386 8 C 0.042 3.958 9 H 0.103 0.897 10 C -0.214 4.214 11 N -0.291 5.291 12 C 0.024 3.976 13 C -0.395 4.395 14 H 0.087 0.913 15 C -0.192 4.192 16 N -0.536 5.536 17 Si 0.736 3.264 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.205 1.205 21 C -0.072 4.072 22 C -0.129 4.129 23 C -0.137 4.137 24 C -0.144 4.144 25 C -0.139 4.139 26 C -0.134 4.134 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.225 0.775 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.012 0.988 39 H 0.063 0.937 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.028 2.985 -20.418 21.799 hybrid contribution 0.528 0.653 0.471 0.963 sum -6.501 3.638 -19.947 21.293 Atomic orbital electron populations 1.21853 0.93763 1.02510 1.01895 1.20391 0.96523 0.99512 0.91813 0.89841 1.21227 0.99842 0.95197 0.83263 1.46518 1.59964 1.27966 1.05829 1.23061 0.78752 0.86836 0.84478 1.90688 1.37691 1.24168 1.86090 1.20496 0.93933 0.96114 0.85240 0.89705 1.22202 0.96597 1.01696 1.00907 1.43807 1.51761 1.14138 1.19399 1.20784 0.93393 0.85505 0.97907 1.19212 1.14294 0.90817 1.15170 0.91279 1.25163 0.97521 0.95914 1.00645 1.70132 1.39455 1.05213 1.38814 0.86243 0.79391 0.78629 0.82143 1.21428 1.21729 1.20472 1.19742 0.97484 0.94285 0.95665 1.21071 1.00096 0.94258 0.97486 1.21156 0.98073 0.99881 0.94566 1.21143 0.98847 0.94916 0.99532 1.21126 1.00087 0.95013 0.97640 1.21083 0.97848 0.99983 0.94439 0.91909 0.92487 0.92241 0.92070 0.92012 0.77502 0.93537 0.92782 0.91803 0.93788 0.94392 0.98794 0.93750 0.85910 0.86109 0.86303 0.86194 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.88 37.16 0.33 -0.93 16 2 C -0.06 -0.65 2.60 -91.77 -0.24 -0.88 16 3 H 0.08 0.77 7.88 -51.93 -0.41 0.36 16 4 C 0.13 1.80 4.80 -4.04 -0.02 1.78 16 5 N -0.75 -11.20 5.18 -60.30 -0.31 -11.52 16 6 C 0.48 10.02 7.05 -10.98 -0.08 9.95 16 7 O -0.51 -13.39 14.86 5.56 0.08 -13.31 16 8 C 0.16 3.23 3.12 -69.08 -0.22 3.01 16 9 H 0.09 1.67 7.87 -51.93 -0.41 1.26 16 10 C -0.15 -2.54 9.08 37.16 0.34 -2.20 16 11 N -0.57 -14.99 2.58 -174.82 -0.45 -15.45 16 12 C 0.17 4.51 7.62 59.85 0.46 4.97 16 13 C -0.27 -7.50 9.58 -15.06 -0.14 -7.65 16 14 H 0.07 1.86 7.82 -52.49 -0.41 1.45 16 15 C 0.01 0.22 5.14 -17.43 -0.09 0.13 16 16 N -0.89 -27.46 10.64 55.49 0.59 -26.87 16 17 Si 0.91 22.34 29.57 -169.99 -5.03 17.31 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 C -0.07 -0.75 4.78 -104.62 -0.50 -1.25 16 22 C -0.11 -1.17 8.76 -39.58 -0.35 -1.52 16 23 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 24 C -0.13 -1.15 10.05 -39.58 -0.40 -1.54 16 25 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 26 C -0.12 -1.13 9.67 -39.58 -0.38 -1.52 16 27 H 0.06 0.53 7.18 -51.93 -0.37 0.15 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.54 7.41 -51.93 -0.38 0.16 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.92 7.55 -51.93 -0.39 0.53 16 32 H 0.39 4.58 7.07 -40.82 -0.29 4.30 16 33 H 0.05 0.58 7.57 -51.93 -0.39 0.19 16 34 H 0.05 0.94 6.67 -51.93 -0.35 0.59 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.04 1.34 6.64 -51.93 -0.35 0.99 16 37 H 0.04 1.06 7.33 -51.93 -0.38 0.68 16 38 H -0.01 -0.16 6.44 -51.93 -0.33 -0.49 16 39 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.12 1.23 7.17 -52.49 -0.38 0.85 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 42 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 43 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.12 1.00 7.95 -52.49 -0.42 0.58 16 LS Contribution 354.83 15.07 5.35 5.35 Total: -1.00 -34.83 354.83 -8.79 -43.62 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.93 Total: 1.57 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -2.08 Total: -0.70 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -0.17 Total: -53.83 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.08 Total: -13.31 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.83 -8.79 -43.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263904946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.575 kcal (2) G-P(sol) polarization free energy of solvation -34.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.65 seconds