Wall clock time and date at job start Tue Mar 31 2020 08:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47399 * 2 1 4 4 C 1.52995 * 109.47288 * 120.01007 * 2 1 3 5 5 N 1.46501 * 109.47019 * 294.99434 * 4 2 1 6 6 C 1.34776 * 120.00204 * 180.02562 * 5 4 2 7 7 O 1.21279 * 119.99759 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00055 * 179.97438 * 6 5 4 9 9 H 1.08993 * 109.47205 * 300.00397 * 8 6 5 10 10 C 1.53003 * 109.46841 * 60.00344 * 8 6 5 11 11 N 1.46492 * 109.46989 * 180.02562 * 8 6 5 12 12 C 1.46498 * 120.00411 * 300.00342 * 11 8 6 13 13 C 1.36942 * 119.99962 * 120.00622 * 11 8 6 14 14 H 1.08002 * 119.99854 * 23.88663 * 13 11 8 15 15 C 1.38811 * 120.00208 * 203.89498 * 13 11 8 16 16 N 1.31621 * 119.99879 * 10.79015 * 15 13 11 17 17 Si 1.86799 * 120.00142 * 190.79461 * 15 13 11 18 18 H 1.48502 * 109.47192 * 89.99433 * 17 15 13 19 19 H 1.48498 * 109.47112 * 209.99284 * 17 15 13 20 20 H 1.48491 * 109.47140 * 329.99512 * 17 15 13 21 21 C 1.50706 * 109.46607 * 240.00608 * 2 1 3 22 22 C 1.38231 * 119.99839 * 299.72842 * 21 2 1 23 23 C 1.38239 * 120.00045 * 179.81317 * 22 21 2 24 24 C 1.38235 * 119.99595 * 0.39029 * 23 22 21 25 25 C 1.38238 * 120.00228 * 359.86194 * 24 23 22 26 26 C 1.38230 * 119.99898 * 119.99695 * 21 2 1 27 27 H 1.09006 * 109.47068 * 299.99409 * 1 2 3 28 28 H 1.08996 * 109.47678 * 59.99254 * 1 2 3 29 29 H 1.08995 * 109.47399 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47045 * 175.00010 * 4 2 1 31 31 H 1.08993 * 109.47625 * 54.99382 * 4 2 1 32 32 H 0.97004 * 119.99615 * 359.97438 * 5 4 2 33 33 H 1.09005 * 109.47192 * 299.99721 * 10 8 6 34 34 H 1.09001 * 109.46986 * 59.99735 * 10 8 6 35 35 H 1.08994 * 109.47281 * 179.97438 * 10 8 6 36 36 H 1.08995 * 109.47185 * 95.01175 * 12 11 8 37 37 H 1.09003 * 109.47490 * 215.01889 * 12 11 8 38 38 H 1.09001 * 109.47036 * 335.01673 * 12 11 8 39 39 H 0.97007 * 119.99958 * 180.02562 * 16 15 13 40 40 H 1.08001 * 120.00514 * 359.97438 * 22 21 2 41 41 H 1.07993 * 120.00373 * 180.22997 * 23 22 21 42 42 H 1.08004 * 120.00168 * 179.83455 * 24 23 22 43 43 H 1.07996 * 119.99820 * 179.97438 * 25 24 23 44 44 H 1.07997 * 120.00400 * 359.97438 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 1.6526 0.0350 2.4423 6 6 1.9966 -0.4135 3.6658 7 8 2.6273 -1.4432 3.7789 8 6 1.5985 0.3650 4.8932 9 1 2.0331 1.3635 4.8470 10 6 0.0737 0.4749 4.9551 11 7 2.0878 -0.3252 6.0892 12 6 1.6466 -1.6919 6.3783 13 6 2.9577 0.3072 6.9369 14 1 2.9921 1.3862 6.9690 15 6 3.7954 -0.4385 7.7549 16 7 3.9103 -1.7367 7.5704 17 14 4.7594 0.4002 9.1175 18 1 3.9535 0.4026 10.3648 19 1 6.0290 -0.3341 9.3498 20 1 5.0619 1.7989 8.7210 21 6 2.0322 -0.7103 -1.2306 22 6 1.7028 -2.0353 -1.4466 23 6 2.1603 -2.6858 -2.5774 24 6 2.9538 -2.0135 -3.4880 25 6 3.2875 -0.6900 -3.2693 26 6 2.8268 -0.0385 -2.1405 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3634 -1.0276 0.0005 30 1 3.1263 -0.7996 1.2054 31 1 1.6054 -1.7199 1.2949 32 1 1.1490 0.8592 2.3518 33 1 -0.2900 0.9886 4.0652 34 1 -0.3609 -0.5237 5.0013 35 1 -0.2143 1.0375 5.8431 36 1 2.3777 -2.3999 5.9884 37 1 1.5528 -1.8230 7.4564 38 1 0.6807 -1.8695 5.9054 39 1 4.4955 -2.2579 8.1423 40 1 1.0859 -2.5617 -0.7333 41 1 1.8999 -3.7199 -2.7480 42 1 3.3135 -2.5224 -4.3701 43 1 3.9078 -0.1649 -3.9806 44 1 3.0874 0.9956 -1.9698 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263904946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:45:05 Heat of formation + Delta-G solvation = -16.011471 kcal Electronic energy + Delta-G solvation = -23002.552672 eV Core-core repulsion = 19726.421064 eV Total energy + Delta-G solvation = -3276.131608 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.92855 -40.19262 -37.55618 -36.73003 -34.41346 -33.65731 -31.78399 -31.02474 -30.09631 -28.04070 -27.47074 -25.70859 -24.33445 -23.53203 -22.86557 -21.25257 -20.60031 -18.89313 -17.91884 -17.64847 -17.18578 -16.73498 -16.20670 -15.98759 -15.85387 -15.45730 -15.04849 -14.80805 -14.58659 -14.39737 -14.17497 -13.99139 -13.88587 -13.46171 -13.34562 -13.04826 -12.91521 -12.73299 -12.55563 -12.39351 -12.35116 -12.26589 -12.15437 -11.87310 -11.79118 -11.73068 -11.60752 -10.78843 -10.46057 -9.94988 -9.79788 -9.61226 -8.75576 -7.78680 -5.32415 0.44749 0.51895 1.46463 1.48820 1.57820 1.92093 2.33663 2.53543 2.90173 3.35420 3.64424 3.74184 3.78692 4.05305 4.16149 4.16397 4.19054 4.30585 4.40738 4.42757 4.49097 4.62557 4.65590 4.74790 4.77632 4.86108 4.97139 4.99793 5.08233 5.12700 5.16633 5.19874 5.27271 5.34318 5.47365 5.57590 5.63124 5.64476 5.64777 5.73719 5.86575 6.13945 6.30684 6.76292 7.14083 7.53803 7.87495 8.31483 9.23169 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.025614 B = 0.003158 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.883141 B = 8864.734931 C = 9217.072860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.050 4.050 3 H 0.100 0.900 4 C 0.134 3.866 5 N -0.718 5.718 6 C 0.485 3.515 7 O -0.576 6.576 8 C 0.146 3.854 9 H 0.099 0.901 10 C -0.141 4.141 11 N -0.591 5.591 12 C 0.192 3.808 13 C -0.271 4.271 14 H 0.084 0.916 15 C -0.058 4.058 16 N -0.936 5.936 17 Si 0.977 3.023 18 H -0.282 1.282 19 H -0.300 1.300 20 H -0.262 1.262 21 C -0.087 4.087 22 C -0.129 4.129 23 C -0.131 4.131 24 C -0.132 4.132 25 C -0.127 4.127 26 C -0.125 4.125 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.036 0.964 31 H 0.048 0.952 32 H 0.413 0.587 33 H 0.094 0.906 34 H 0.042 0.958 35 H 0.066 0.934 36 H -0.001 1.001 37 H 0.013 0.987 38 H 0.019 0.981 39 H 0.245 0.755 40 H 0.119 0.881 41 H 0.134 0.866 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.703 6.574 -22.423 24.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.068 4.068 3 H 0.118 0.882 4 C 0.009 3.991 5 N -0.374 5.374 6 C 0.270 3.730 7 O -0.454 6.454 8 C 0.035 3.965 9 H 0.117 0.883 10 C -0.200 4.200 11 N -0.312 5.312 12 C 0.047 3.953 13 C -0.401 4.401 14 H 0.101 0.899 15 C -0.253 4.253 16 N -0.582 5.582 17 Si 0.804 3.196 18 H -0.208 1.208 19 H -0.227 1.227 20 H -0.186 1.186 21 C -0.087 4.087 22 C -0.147 4.147 23 C -0.148 4.148 24 C -0.150 4.150 25 C -0.145 4.145 26 C -0.143 4.143 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.251 0.749 33 H 0.113 0.887 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.017 0.983 37 H 0.032 0.968 38 H 0.038 0.962 39 H 0.054 0.946 40 H 0.137 0.863 41 H 0.152 0.848 42 H 0.158 0.842 43 H 0.160 0.840 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.161 5.716 -22.224 24.355 hybrid contribution 0.813 -0.138 0.832 1.172 sum -7.348 5.578 -21.392 23.296 Atomic orbital electron populations 1.21850 0.92411 1.02489 1.03036 1.20289 0.97503 0.99551 0.89488 0.88220 1.21233 0.98375 0.95190 0.84278 1.46092 1.58466 1.28256 1.04600 1.22844 0.78068 0.85956 0.86109 1.90688 1.40705 1.26894 1.87110 1.20829 0.96606 0.95738 0.83369 0.88315 1.22078 0.92672 1.01780 1.03506 1.43979 1.51830 1.13740 1.21647 1.20340 0.93252 0.85620 0.96131 1.19705 1.13603 0.91601 1.15229 0.89872 1.26061 0.99199 0.96524 1.03510 1.70360 1.40783 1.06938 1.40093 0.85130 0.77270 0.78095 0.79089 1.20847 1.22738 1.18608 1.19838 0.98296 0.94473 0.96115 1.21207 1.00740 0.94699 0.98050 1.21419 0.98208 1.00732 0.94488 1.21475 0.98291 0.95168 1.00028 1.21465 0.99968 0.95212 0.97827 1.21347 0.97529 1.00864 0.94550 0.90987 0.91057 0.92926 0.94567 0.93338 0.74947 0.88706 0.93911 0.91467 0.98261 0.96795 0.96241 0.94582 0.86276 0.84791 0.84201 0.84026 0.84546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.88 71.98 0.64 -1.47 16 2 C -0.05 -0.91 2.60 -11.54 -0.03 -0.94 16 3 H 0.10 1.53 7.88 -2.39 -0.02 1.51 16 4 C 0.13 3.65 4.80 86.38 0.41 4.06 16 5 N -0.72 -20.30 5.18 -463.07 -2.40 -22.69 16 6 C 0.48 19.85 7.05 87.66 0.62 20.47 16 7 O -0.58 -31.02 14.86 -3.02 -0.04 -31.07 16 8 C 0.15 5.84 3.12 44.25 0.14 5.98 16 9 H 0.10 3.65 7.87 -2.39 -0.02 3.63 16 10 C -0.14 -4.21 9.08 71.98 0.65 -3.56 16 11 N -0.59 -31.23 2.58 -707.00 -1.83 -33.05 16 12 C 0.19 10.64 7.62 127.77 0.97 11.61 16 13 C -0.27 -15.37 9.58 84.03 0.81 -14.56 16 14 H 0.08 4.36 7.82 -2.91 -0.02 4.34 16 15 C -0.06 -3.40 5.14 84.86 0.44 -2.96 16 16 N -0.94 -59.97 10.64 21.65 0.23 -59.74 16 17 Si 0.98 46.57 29.57 68.60 2.03 48.60 16 18 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 20 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 21 C -0.09 -1.72 4.78 -19.87 -0.09 -1.82 16 22 C -0.13 -2.66 8.76 22.27 0.20 -2.47 16 23 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16 24 C -0.13 -2.16 10.05 22.27 0.22 -1.94 16 25 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 26 C -0.12 -2.22 9.67 22.27 0.22 -2.00 16 27 H 0.07 0.93 7.18 -2.38 -0.02 0.92 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 29 H 0.05 0.87 7.41 -2.39 -0.02 0.86 16 30 H 0.04 1.18 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.48 7.55 -2.39 -0.02 1.46 16 32 H 0.41 8.16 7.07 -92.71 -0.66 7.51 16 33 H 0.09 1.90 7.57 -2.38 -0.02 1.88 16 34 H 0.04 1.38 6.67 -2.39 -0.02 1.36 16 35 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.00 -0.06 6.64 -2.39 -0.02 -0.08 16 37 H 0.01 0.79 7.33 -2.39 -0.02 0.77 16 38 H 0.02 0.94 6.44 -2.39 -0.02 0.92 16 39 H 0.25 15.23 8.31 -92.70 -0.77 14.46 16 40 H 0.12 2.43 7.17 -2.91 -0.02 2.41 16 41 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 42 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 43 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 44 H 0.14 1.90 7.95 -2.91 -0.02 1.88 16 Total: -1.00 -79.71 354.83 3.95 -75.76 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.33 Total: 15.80 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: 5.64 Total: 6.40 kcal Atomic # 7 Polarization: -111.50 SS G_CDS: -3.99 Total: -115.49 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -0.04 Total: -31.07 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -79.71 3.95 -75.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263904946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.752 kcal (2) G-P(sol) polarization free energy of solvation -79.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds