Wall clock time and date at job start Tue Mar 31 2020 08:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47224 * 2 1 4 4 C 1.53009 * 109.46646 * 239.99882 * 2 1 3 5 5 C 1.53004 * 109.46661 * 174.99595 * 4 2 1 6 6 N 1.46897 * 109.46791 * 179.97438 * 5 4 2 7 7 C 1.46900 * 111.00169 * 66.05123 * 6 5 4 8 8 C 1.46903 * 110.99827 * 190.00341 * 6 5 4 9 9 N 1.46500 * 109.47296 * 120.00176 * 2 1 3 10 10 C 1.34775 * 119.99765 * 274.99732 * 9 2 1 11 11 O 1.21584 * 120.00262 * 0.02562 * 10 9 2 12 12 C 1.47639 * 119.99623 * 179.97438 * 10 9 2 13 13 C 1.40014 * 119.89302 * 179.97438 * 12 10 9 14 14 C 1.36324 * 120.10641 * 180.23257 * 13 12 10 15 15 C 1.40888 * 119.89069 * 359.52635 * 14 13 12 16 16 C 1.41102 * 120.10372 * 180.22977 * 15 14 13 17 17 H 1.08000 * 119.99913 * 204.78630 * 16 15 14 18 18 C 1.40225 * 120.00169 * 24.78240 * 16 15 14 19 19 N 1.30645 * 119.99670 * 17.74323 * 18 16 15 20 20 Si 1.86801 * 120.00217 * 197.74152 * 18 16 15 21 21 H 1.48496 * 109.47041 * 60.00188 * 20 18 16 22 22 H 1.48497 * 109.46978 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46946 * 299.99947 * 20 18 16 24 24 C 1.40897 * 119.79361 * 0.47331 * 15 14 13 25 25 C 1.36314 * 119.88751 * 359.75684 * 24 15 14 26 26 H 1.09003 * 109.46931 * 60.00004 * 1 2 3 27 27 H 1.09002 * 109.46857 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46672 * 300.00093 * 1 2 3 29 29 H 1.08989 * 109.47145 * 294.99908 * 4 2 1 30 30 H 1.08995 * 109.46871 * 55.00586 * 4 2 1 31 31 H 1.08999 * 109.47388 * 300.00591 * 5 4 2 32 32 H 1.09004 * 109.46674 * 60.00568 * 5 4 2 33 33 H 1.09001 * 109.46703 * 59.99451 * 7 6 5 34 34 H 1.08997 * 109.47838 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.46792 * 300.00098 * 7 6 5 36 36 H 1.09001 * 109.47189 * 60.00214 * 8 6 5 37 37 H 1.09002 * 109.47141 * 180.02562 * 8 6 5 38 38 H 1.08999 * 109.47232 * 299.99805 * 8 6 5 39 39 H 0.97005 * 119.99957 * 94.99706 * 9 2 1 40 40 H 1.07997 * 119.94851 * 359.95986 * 13 12 10 41 41 H 1.07995 * 120.05014 * 179.74690 * 14 13 12 42 42 H 0.97006 * 119.99884 * 179.97438 * 19 18 16 43 43 H 1.07991 * 120.05244 * 179.72938 * 24 15 14 44 44 H 1.08001 * 119.94177 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 7 4.0544 -1.3063 -2.5129 7 6 3.6040 -0.6265 -3.7348 8 6 5.5180 -1.4303 -2.4886 9 7 2.0184 -0.6906 1.1961 10 6 2.1472 -0.0183 2.3571 11 8 1.8576 1.1613 2.4118 12 6 2.6388 -0.7144 3.5626 13 6 2.7723 -0.0137 4.7674 14 6 3.2303 -0.6511 5.8821 15 6 3.5601 -2.0195 5.8228 16 6 4.0300 -2.6848 6.9750 17 1 4.6441 -3.5677 6.8760 18 6 3.6997 -2.1997 8.2485 19 7 2.7019 -1.3687 8.3923 20 14 4.6863 -2.7416 9.7393 21 1 6.1070 -2.3472 9.5626 22 1 4.1395 -2.0918 10.9575 23 1 4.5961 -4.2168 9.8829 24 6 3.4242 -2.7204 4.6081 25 6 2.9698 -2.0733 3.4977 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.7516 -1.7715 -1.2056 30 1 1.6054 -0.2617 -2.1370 31 1 3.8531 0.4370 -1.3574 32 1 3.9994 -1.0729 -0.4261 33 1 3.9828 0.3956 -3.7425 34 1 3.9808 -1.1599 -4.6074 35 1 2.5144 -0.6103 -3.7608 36 1 5.8199 -1.9985 -1.6087 37 1 5.8540 -1.9466 -3.3878 38 1 5.9662 -0.4374 -2.4513 39 1 2.2491 -1.6319 1.1525 40 1 2.5161 1.0345 4.8127 41 1 3.3368 -0.1087 6.8099 42 1 2.4731 -1.0334 9.2733 43 1 3.6799 -3.7683 4.5568 44 1 2.8649 -2.6098 2.5662 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270396696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:24 Heat of formation + Delta-G solvation = -30.368857 kcal Electronic energy + Delta-G solvation = -22632.496734 eV Core-core repulsion = 19355.742543 eV Total energy + Delta-G solvation = -3276.754191 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.35824 -37.92525 -37.08932 -35.31486 -33.87443 -31.57577 -30.01468 -29.49582 -28.94969 -27.77428 -25.88248 -24.67829 -22.39110 -21.41846 -21.01455 -20.33648 -19.63925 -17.51635 -16.87936 -16.07593 -15.59966 -15.36684 -15.23346 -14.92879 -14.17388 -14.00955 -13.87684 -13.46182 -13.19984 -13.08028 -12.74287 -12.56025 -12.48635 -12.19746 -12.05685 -11.97462 -11.87934 -11.75085 -11.38062 -11.21046 -11.08038 -10.98750 -10.97007 -10.70798 -10.58708 -10.05062 -9.51967 -9.31887 -8.92949 -8.57520 -8.54646 -7.68106 -7.54865 -7.00463 -4.58762 2.26521 2.93131 2.95881 2.99224 3.05167 3.75230 3.75495 3.82493 3.90565 4.59062 4.79531 4.91610 4.95242 5.10681 5.18125 5.33151 5.36873 5.51698 5.53619 5.57787 5.64616 5.68809 5.72103 5.80837 5.84985 5.93367 6.01703 6.04371 6.28068 6.33275 6.39065 6.81893 6.83625 6.84120 6.85897 7.03735 7.09049 7.13563 7.45457 7.63811 7.81049 7.89639 8.07246 8.29781 8.44801 8.64611 8.77373 9.12521 9.91471 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.023676 B = 0.003142 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.332904 B = 8910.027515 C = 9698.322864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.082 0.918 4 C -0.121 4.121 5 C 0.053 3.947 6 N -0.548 5.548 7 C 0.021 3.979 8 C 0.023 3.977 9 N -0.737 5.737 10 C 0.572 3.428 11 O -0.574 6.574 12 C -0.283 4.283 13 C -0.036 4.036 14 C -0.183 4.183 15 C 0.129 3.871 16 C -0.445 4.445 17 H 0.084 0.916 18 C 0.074 3.926 19 N -0.770 5.770 20 Si 0.914 3.086 21 H -0.260 1.260 22 H -0.276 1.276 23 H -0.263 1.263 24 C -0.235 4.235 25 C -0.049 4.049 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.034 0.966 32 H 0.080 0.920 33 H 0.024 0.976 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.024 0.976 39 H 0.396 0.604 40 H 0.099 0.901 41 H 0.120 0.880 42 H 0.287 0.713 43 H 0.096 0.904 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.163 -0.854 -15.107 15.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.100 0.900 4 C -0.160 4.160 5 C -0.075 4.075 6 N -0.272 5.272 7 C -0.128 4.128 8 C -0.125 4.125 9 N -0.390 5.390 10 C 0.367 3.633 11 O -0.456 6.456 12 C -0.288 4.288 13 C -0.056 4.056 14 C -0.202 4.202 15 C 0.125 3.875 16 C -0.472 4.472 17 H 0.102 0.898 18 C -0.148 4.148 19 N -0.393 5.393 20 Si 0.737 3.263 21 H -0.185 1.185 22 H -0.200 1.200 23 H -0.187 1.187 24 C -0.255 4.255 25 C -0.068 4.068 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.043 0.957 39 H 0.231 0.769 40 H 0.117 0.883 41 H 0.138 0.862 42 H 0.099 0.901 43 H 0.115 0.885 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.614 -0.357 -14.901 14.918 hybrid contribution 0.747 0.092 0.665 1.005 sum 1.362 -0.265 -14.236 14.303 Atomic orbital electron populations 1.22162 0.95708 1.01918 1.02149 1.20769 0.93753 0.97377 0.84166 0.90027 1.21890 0.94838 1.01871 0.97356 1.22188 0.95724 0.96669 0.92895 1.62011 1.11074 1.51574 1.02524 1.22440 1.01416 0.96440 0.92486 1.22385 0.87141 1.00132 1.02823 1.46026 1.69606 1.13879 1.09523 1.18589 0.75818 0.86047 0.82894 1.90629 1.52948 1.16565 1.85476 1.18933 1.21199 0.94990 0.93671 1.20482 0.95367 0.97996 0.91716 1.21014 1.06940 0.94689 0.97599 1.17772 0.86364 0.91479 0.91838 1.19801 1.26821 1.10529 0.90063 0.89809 1.26102 0.93791 0.93484 1.01380 1.69744 1.20240 1.22872 1.26421 0.86266 0.80898 0.80014 0.79110 1.18482 1.20045 1.18698 1.20666 1.11977 0.98466 0.94387 1.20361 0.96833 0.93056 0.96541 0.92360 0.92614 0.91867 0.90584 0.90813 0.94732 0.90130 0.95758 0.91621 0.91091 0.91082 0.91502 0.95717 0.76912 0.88255 0.86215 0.90123 0.88536 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.48 37.16 0.35 -1.71 16 2 C 0.15 1.97 2.57 -67.92 -0.17 1.80 16 3 H 0.08 1.26 7.58 -51.93 -0.39 0.87 16 4 C -0.12 -1.29 4.68 -26.72 -0.13 -1.42 16 5 C 0.05 0.60 4.84 -3.82 -0.02 0.58 16 6 N -0.55 -5.73 5.02 -251.26 -1.26 -6.99 16 7 C 0.02 0.18 9.32 60.06 0.56 0.74 16 8 C 0.02 0.22 9.57 60.07 0.57 0.79 16 9 N -0.74 -11.88 4.48 -54.81 -0.25 -12.12 16 10 C 0.57 12.03 7.73 -12.42 -0.10 11.93 16 11 O -0.57 -13.70 15.98 5.29 0.08 -13.61 16 12 C -0.28 -6.46 5.89 -104.73 -0.62 -7.08 16 13 C -0.04 -0.89 9.52 -39.61 -0.38 -1.27 16 14 C -0.18 -4.70 8.63 -39.27 -0.34 -5.04 16 15 C 0.13 3.28 5.57 -106.80 -0.60 2.69 16 16 C -0.44 -11.08 9.04 -37.75 -0.34 -11.43 16 17 H 0.08 1.97 7.91 -52.49 -0.42 1.56 16 18 C 0.07 1.75 5.14 -17.31 -0.09 1.66 16 19 N -0.77 -18.93 10.95 55.56 0.61 -18.32 16 20 Si 0.91 17.46 29.60 -169.99 -5.03 12.43 16 21 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 22 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 23 H -0.26 -4.94 7.11 56.52 0.40 -4.53 16 24 C -0.24 -5.44 9.73 -39.27 -0.38 -5.83 16 25 C -0.05 -1.04 9.47 -39.61 -0.38 -1.41 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.69 6.55 -51.93 -0.34 0.35 16 31 H 0.03 0.42 8.12 -51.93 -0.42 -0.01 16 32 H 0.08 1.02 7.67 -51.93 -0.40 0.62 16 33 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 35 H 0.07 0.57 6.47 -51.93 -0.34 0.23 16 36 H 0.07 0.68 8.12 -51.93 -0.42 0.25 16 37 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 38 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.40 5.71 6.60 -40.82 -0.27 5.44 16 40 H 0.10 2.42 7.63 -52.49 -0.40 2.02 16 41 H 0.12 3.15 6.16 -52.49 -0.32 2.82 16 42 H 0.29 6.39 8.29 -40.82 -0.34 6.05 16 43 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 44 H 0.09 1.55 6.37 -52.49 -0.33 1.22 16 LS Contribution 359.20 15.07 5.41 5.41 Total: -1.00 -28.37 359.20 -9.47 -37.84 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -6.99 Total: 10.36 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -2.04 Total: -14.99 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: -0.90 Total: -37.43 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.08 Total: -13.61 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.43 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.37 -9.47 -37.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270396696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.470 kcal (2) G-P(sol) polarization free energy of solvation -28.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds