Wall clock time and date at job start Tue Mar 31 2020 08:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47224 * 2 1 4 4 C 1.53009 * 109.46646 * 239.99882 * 2 1 3 5 5 C 1.53004 * 109.46661 * 174.99595 * 4 2 1 6 6 N 1.46897 * 109.46791 * 179.97438 * 5 4 2 7 7 C 1.46900 * 111.00169 * 66.05123 * 6 5 4 8 8 C 1.46903 * 110.99827 * 190.00341 * 6 5 4 9 9 N 1.46500 * 109.47296 * 120.00176 * 2 1 3 10 10 C 1.34775 * 119.99765 * 274.99732 * 9 2 1 11 11 O 1.21584 * 120.00262 * 0.02562 * 10 9 2 12 12 C 1.47639 * 119.99623 * 179.97438 * 10 9 2 13 13 C 1.40014 * 119.89302 * 179.97438 * 12 10 9 14 14 C 1.36324 * 120.10641 * 180.23257 * 13 12 10 15 15 C 1.40888 * 119.89069 * 359.52635 * 14 13 12 16 16 C 1.41102 * 120.10372 * 180.22977 * 15 14 13 17 17 H 1.08000 * 119.99913 * 204.78630 * 16 15 14 18 18 C 1.40225 * 120.00169 * 24.78240 * 16 15 14 19 19 N 1.30645 * 119.99670 * 17.74323 * 18 16 15 20 20 Si 1.86801 * 120.00217 * 197.74152 * 18 16 15 21 21 H 1.48496 * 109.47041 * 60.00188 * 20 18 16 22 22 H 1.48497 * 109.46978 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46946 * 299.99947 * 20 18 16 24 24 C 1.40897 * 119.79361 * 0.47331 * 15 14 13 25 25 C 1.36314 * 119.88751 * 359.75684 * 24 15 14 26 26 H 1.09003 * 109.46931 * 60.00004 * 1 2 3 27 27 H 1.09002 * 109.46857 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46672 * 300.00093 * 1 2 3 29 29 H 1.08989 * 109.47145 * 294.99908 * 4 2 1 30 30 H 1.08995 * 109.46871 * 55.00586 * 4 2 1 31 31 H 1.08999 * 109.47388 * 300.00591 * 5 4 2 32 32 H 1.09004 * 109.46674 * 60.00568 * 5 4 2 33 33 H 1.09001 * 109.46703 * 59.99451 * 7 6 5 34 34 H 1.08997 * 109.47838 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.46792 * 300.00098 * 7 6 5 36 36 H 1.09001 * 109.47189 * 60.00214 * 8 6 5 37 37 H 1.09002 * 109.47141 * 180.02562 * 8 6 5 38 38 H 1.08999 * 109.47232 * 299.99805 * 8 6 5 39 39 H 0.97005 * 119.99957 * 94.99706 * 9 2 1 40 40 H 1.07997 * 119.94851 * 359.95986 * 13 12 10 41 41 H 1.07995 * 120.05014 * 179.74690 * 14 13 12 42 42 H 0.97006 * 119.99884 * 179.97438 * 19 18 16 43 43 H 1.07991 * 120.05244 * 179.72938 * 24 15 14 44 44 H 1.08001 * 119.94177 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 7 4.0544 -1.3063 -2.5129 7 6 3.6040 -0.6265 -3.7348 8 6 5.5180 -1.4303 -2.4886 9 7 2.0184 -0.6906 1.1961 10 6 2.1472 -0.0183 2.3571 11 8 1.8576 1.1613 2.4118 12 6 2.6388 -0.7144 3.5626 13 6 2.7723 -0.0137 4.7674 14 6 3.2303 -0.6511 5.8821 15 6 3.5601 -2.0195 5.8228 16 6 4.0300 -2.6848 6.9750 17 1 4.6441 -3.5677 6.8760 18 6 3.6997 -2.1997 8.2485 19 7 2.7019 -1.3687 8.3923 20 14 4.6863 -2.7416 9.7393 21 1 6.1070 -2.3472 9.5626 22 1 4.1395 -2.0918 10.9575 23 1 4.5961 -4.2168 9.8829 24 6 3.4242 -2.7204 4.6081 25 6 2.9698 -2.0733 3.4977 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.7516 -1.7715 -1.2056 30 1 1.6054 -0.2617 -2.1370 31 1 3.8531 0.4370 -1.3574 32 1 3.9994 -1.0729 -0.4261 33 1 3.9828 0.3956 -3.7425 34 1 3.9808 -1.1599 -4.6074 35 1 2.5144 -0.6103 -3.7608 36 1 5.8199 -1.9985 -1.6087 37 1 5.8540 -1.9466 -3.3878 38 1 5.9662 -0.4374 -2.4513 39 1 2.2491 -1.6319 1.1525 40 1 2.5161 1.0345 4.8127 41 1 3.3368 -0.1087 6.8099 42 1 2.4731 -1.0334 9.2733 43 1 3.6799 -3.7683 4.5568 44 1 2.8649 -2.6098 2.5662 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270396696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:23 Heat of formation + Delta-G solvation = -47.359483 kcal Electronic energy + Delta-G solvation = -22633.233503 eV Core-core repulsion = 19355.742543 eV Total energy + Delta-G solvation = -3277.490960 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.91366 -39.18930 -38.54263 -36.59515 -35.68398 -33.00664 -31.78934 -31.11544 -30.09216 -28.46485 -27.66132 -25.58716 -23.99375 -22.95921 -22.20820 -21.59102 -21.26355 -19.34683 -18.48298 -17.34763 -17.09498 -16.42311 -16.21598 -15.88343 -15.71825 -15.68595 -15.34779 -15.06344 -14.47446 -14.29315 -14.12617 -13.98655 -13.66819 -13.61856 -13.24344 -13.18516 -13.01118 -12.80185 -12.74008 -12.63148 -12.57340 -12.36494 -12.03348 -11.90436 -11.79548 -11.65878 -11.34532 -11.11291 -10.65367 -10.01832 -9.55899 -9.39909 -9.34161 -8.78421 -6.47698 0.46584 1.16126 1.37856 1.44598 1.51980 2.13003 2.19195 2.43937 2.81075 2.96221 3.70664 3.88480 3.99877 4.05869 4.28113 4.33508 4.36848 4.41822 4.44568 4.45739 4.55151 4.66039 4.72655 4.74314 4.84821 4.91003 4.97848 5.00679 5.01637 5.03175 5.12358 5.20988 5.25591 5.27179 5.33115 5.59388 5.70841 5.80130 5.97939 6.02754 6.03685 6.09842 6.21310 6.56727 6.77403 6.78228 6.90814 7.50784 8.16556 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.023676 B = 0.003142 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.332904 B = 8910.027515 C = 9698.322864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.143 3.857 3 H 0.061 0.939 4 C -0.106 4.106 5 C 0.055 3.945 6 N -0.555 5.555 7 C 0.018 3.982 8 C 0.022 3.978 9 N -0.717 5.717 10 C 0.572 3.428 11 O -0.609 6.609 12 C -0.293 4.293 13 C -0.051 4.051 14 C -0.204 4.204 15 C 0.101 3.899 16 C -0.474 4.474 17 H 0.092 0.908 18 C 0.033 3.967 19 N -0.805 5.805 20 Si 0.989 3.011 21 H -0.258 1.258 22 H -0.268 1.268 23 H -0.253 1.253 24 C -0.246 4.246 25 C -0.037 4.037 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.030 0.970 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.023 0.977 32 H 0.066 0.934 33 H 0.022 0.978 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.021 0.979 39 H 0.407 0.593 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.295 0.705 43 H 0.116 0.884 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.301 -2.643 -16.927 17.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.038 3.962 3 H 0.079 0.921 4 C -0.144 4.144 5 C -0.073 4.073 6 N -0.279 5.279 7 C -0.130 4.130 8 C -0.127 4.127 9 N -0.369 5.369 10 C 0.365 3.635 11 O -0.493 6.493 12 C -0.297 4.297 13 C -0.070 4.070 14 C -0.223 4.223 15 C 0.098 3.902 16 C -0.501 4.501 17 H 0.110 0.890 18 C -0.185 4.185 19 N -0.428 5.428 20 Si 0.808 3.192 21 H -0.182 1.182 22 H -0.193 1.193 23 H -0.177 1.177 24 C -0.265 4.265 25 C -0.055 4.055 26 H 0.104 0.896 27 H 0.088 0.912 28 H 0.049 0.951 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.040 0.960 39 H 0.244 0.756 40 H 0.107 0.893 41 H 0.121 0.879 42 H 0.106 0.894 43 H 0.134 0.866 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.745 -2.174 -16.774 16.930 hybrid contribution 0.669 0.684 1.094 1.453 sum 1.414 -1.490 -15.680 15.814 Atomic orbital electron populations 1.22119 0.94649 1.02742 1.01959 1.20965 0.94525 0.96558 0.84141 0.92062 1.21782 0.94222 1.02184 0.96260 1.22112 0.96195 0.95941 0.93091 1.62042 1.11589 1.51561 1.02678 1.22520 1.02026 0.96368 0.92050 1.22429 0.86731 1.00086 1.03410 1.45867 1.67960 1.14226 1.08854 1.18383 0.75745 0.85574 0.83763 1.90611 1.54526 1.18028 1.86153 1.19221 1.20808 0.95924 0.93787 1.20548 0.95972 0.97813 0.92709 1.20937 1.08749 0.95318 0.97314 1.18133 0.87071 0.91547 0.93440 1.20130 1.27712 1.11372 0.90883 0.88967 1.27024 0.94276 0.93109 1.04111 1.69803 1.21567 1.23817 1.27625 0.85141 0.78962 0.79930 0.75138 1.18241 1.19270 1.17651 1.20943 1.12056 0.99425 0.94120 1.20686 0.94749 0.92291 0.97798 0.89574 0.91230 0.95082 0.89473 0.88612 0.95910 0.91583 0.95969 0.90352 0.90191 0.91573 0.89952 0.96047 0.75581 0.89265 0.87931 0.89399 0.86623 0.84878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 9.48 71.98 0.68 -2.99 16 2 C 0.14 3.63 2.57 45.00 0.12 3.75 16 3 H 0.06 1.85 7.58 -2.39 -0.02 1.84 16 4 C -0.11 -1.95 4.68 30.60 0.14 -1.81 16 5 C 0.05 1.14 4.84 86.31 0.42 1.56 16 6 N -0.55 -10.25 5.02 -948.83 -4.76 -15.02 16 7 C 0.02 0.26 9.32 127.69 1.19 1.45 16 8 C 0.02 0.37 9.57 127.69 1.22 1.59 16 9 N -0.72 -22.01 4.48 -445.58 -2.00 -24.01 16 10 C 0.57 24.04 7.73 86.73 0.67 24.71 16 11 O -0.61 -29.69 15.98 -3.98 -0.06 -29.75 16 12 C -0.29 -13.44 5.89 -19.93 -0.12 -13.56 16 13 C -0.05 -2.62 9.52 22.25 0.21 -2.41 16 14 C -0.20 -10.96 8.63 22.47 0.19 -10.76 16 15 C 0.10 5.28 5.57 -21.28 -0.12 5.16 16 16 C -0.47 -23.95 9.04 23.46 0.21 -23.74 16 17 H 0.09 4.34 7.91 -2.91 -0.02 4.32 16 18 C 0.03 1.59 5.14 85.35 0.44 2.03 16 19 N -0.80 -40.68 10.95 21.87 0.24 -40.44 16 20 Si 0.99 35.60 29.60 68.60 2.03 37.63 16 21 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 22 H -0.27 -9.24 7.11 99.48 0.71 -8.53 16 23 H -0.25 -8.65 7.11 99.48 0.71 -7.94 16 24 C -0.25 -11.24 9.73 22.47 0.22 -11.02 16 25 C -0.04 -1.50 9.47 22.25 0.21 -1.29 16 26 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.10 1.41 6.55 -2.39 -0.02 1.39 16 31 H 0.02 0.52 8.12 -2.39 -0.02 0.51 16 32 H 0.07 1.56 7.67 -2.39 -0.02 1.54 16 33 H 0.02 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.08 0.94 8.12 -2.39 -0.02 0.92 16 35 H 0.08 1.00 6.47 -2.39 -0.02 0.98 16 36 H 0.07 1.17 8.12 -2.39 -0.02 1.15 16 37 H 0.08 1.13 8.12 -2.39 -0.02 1.11 16 38 H 0.02 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.41 10.63 6.60 -92.70 -0.61 10.01 16 40 H 0.09 4.63 7.63 -2.91 -0.02 4.61 16 41 H 0.10 5.74 6.16 -2.91 -0.02 5.72 16 42 H 0.29 13.42 8.29 -92.70 -0.77 12.65 16 43 H 0.12 4.74 8.06 -2.92 -0.02 4.72 16 44 H 0.13 4.19 6.37 -2.91 -0.02 4.17 16 Total: -1.00 -63.70 359.20 1.51 -62.19 By element: Atomic # 1 Polarization: 36.34 SS G_CDS: 0.37 Total: 36.71 kcal Atomic # 6 Polarization: -33.01 SS G_CDS: 5.69 Total: -27.32 kcal Atomic # 7 Polarization: -72.94 SS G_CDS: -6.52 Total: -79.46 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.06 Total: -29.75 kcal Atomic # 14 Polarization: 35.60 SS G_CDS: 2.03 Total: 37.63 kcal Total: -63.70 1.51 -62.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270396696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.829 kcal (2) G-P(sol) polarization free energy of solvation -63.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds