Wall clock time and date at job start Tue Mar 31 2020 08:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09003 * 109.47188 * 2 1 4 4 C 1.53007 * 109.47181 * 119.99488 * 2 1 3 5 5 C 1.53001 * 109.46920 * 185.00246 * 4 2 1 6 6 N 1.46908 * 109.46666 * 180.02562 * 5 4 2 7 7 C 1.46898 * 110.99592 * 170.00071 * 6 5 4 8 8 C 1.46892 * 110.99783 * 293.95303 * 6 5 4 9 9 N 1.46499 * 109.47591 * 239.99722 * 2 1 3 10 10 C 1.34777 * 119.99824 * 84.99511 * 9 2 1 11 11 O 1.21580 * 120.00336 * 0.02562 * 10 9 2 12 12 C 1.47639 * 119.99658 * 180.02562 * 10 9 2 13 13 C 1.40014 * 119.89956 * 359.72873 * 12 10 9 14 14 C 1.36316 * 120.10663 * 179.75636 * 13 12 10 15 15 C 1.40884 * 119.89324 * 0.51534 * 14 13 12 16 16 C 1.41112 * 120.10570 * 179.71313 * 15 14 13 17 17 H 1.07997 * 120.00313 * 204.64693 * 16 15 14 18 18 C 1.40231 * 119.99406 * 24.65049 * 16 15 14 19 19 N 1.30639 * 120.00206 * 17.87137 * 18 16 15 20 20 Si 1.86797 * 119.99604 * 197.87187 * 18 16 15 21 21 H 1.48499 * 109.47326 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47141 * 120.00009 * 20 18 16 23 23 H 1.48494 * 109.47457 * 240.00094 * 20 18 16 24 24 C 1.40885 * 119.79308 * 359.74150 * 15 14 13 25 25 C 1.36316 * 119.89344 * 359.97438 * 24 15 14 26 26 H 1.09000 * 109.47280 * 300.00247 * 1 2 3 27 27 H 1.09000 * 109.47517 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47342 * 60.00338 * 1 2 3 29 29 H 1.08996 * 109.46822 * 304.99961 * 4 2 1 30 30 H 1.08999 * 109.46684 * 65.00420 * 4 2 1 31 31 H 1.08996 * 109.47140 * 299.99520 * 5 4 2 32 32 H 1.08996 * 109.47605 * 60.00152 * 5 4 2 33 33 H 1.08997 * 109.47731 * 59.99842 * 7 6 5 34 34 H 1.08999 * 109.46759 * 179.97438 * 7 6 5 35 35 H 1.09007 * 109.47057 * 299.99814 * 7 6 5 36 36 H 1.09001 * 109.47743 * 60.00023 * 8 6 5 37 37 H 1.08998 * 109.47127 * 180.02562 * 8 6 5 38 38 H 1.09010 * 109.47281 * 299.99769 * 8 6 5 39 39 H 0.96999 * 120.00088 * 265.00323 * 9 2 1 40 40 H 1.07999 * 119.94385 * 0.02562 * 13 12 10 41 41 H 1.07997 * 120.05136 * 180.22898 * 14 13 12 42 42 H 0.97001 * 119.99693 * 179.97438 * 19 18 16 43 43 H 1.08004 * 120.05301 * 179.97438 * 24 15 14 44 44 H 1.08002 * 119.94846 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5648 -0.6131 1.3138 6 7 4.0545 -1.3061 2.5130 7 6 5.5180 -1.4299 2.4886 8 6 3.6040 -0.6261 3.7347 9 7 2.0183 -0.6906 -1.1961 10 6 2.1470 -0.0183 -2.3571 11 8 1.8582 1.1614 -2.4117 12 6 2.6387 -0.7145 -3.5626 13 6 2.9761 -2.0718 -3.4959 14 6 3.4258 -2.7200 -4.6076 15 6 3.5612 -2.0193 -5.8224 16 6 4.0321 -2.6844 -6.9744 17 1 4.5085 -2.1237 -7.7649 18 6 3.8813 -4.0736 -7.0927 19 7 3.0211 -4.7039 -6.3382 20 14 4.9104 -5.0227 -8.3294 21 1 5.8027 -4.0835 -9.0553 22 1 5.7317 -6.0344 -7.6172 23 1 4.0156 -5.7048 -9.2984 24 6 3.2256 -0.6524 -5.8832 25 6 2.7712 -0.0141 -4.7677 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 1.6053 -0.2616 2.1370 30 1 1.7516 -1.7714 1.2057 31 1 3.9994 -1.0727 0.4261 32 1 3.8531 0.4371 1.3574 33 1 5.9662 -0.4371 2.4512 34 1 5.8539 -1.9461 3.3879 35 1 5.8199 -1.9982 1.6087 36 1 2.5144 -0.6099 3.7609 37 1 3.9808 -1.1595 4.6074 38 1 3.9828 0.3960 3.7424 39 1 2.2490 -1.6318 -1.1525 40 1 2.8758 -2.6070 -2.5633 41 1 3.6823 -3.7678 -4.5561 42 1 2.9165 -5.6647 -6.4203 43 1 3.3281 -0.1111 -6.8122 44 1 2.5140 1.0339 -4.8133 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270396698.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:28 Heat of formation + Delta-G solvation = -30.618518 kcal Electronic energy + Delta-G solvation = -22704.383583 eV Core-core repulsion = 19427.618566 eV Total energy + Delta-G solvation = -3276.765017 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -39.35286 -37.91549 -37.09138 -35.31363 -33.85927 -31.63962 -29.94320 -29.42593 -29.03184 -27.75838 -25.88809 -24.66568 -22.41963 -21.31664 -21.00730 -20.42289 -19.61526 -17.51792 -16.82469 -16.10267 -15.56117 -15.44312 -15.20486 -14.91448 -14.15182 -14.01655 -13.87038 -13.45059 -13.19219 -13.07031 -12.78542 -12.54741 -12.48742 -12.15786 -12.00986 -11.96686 -11.88817 -11.75243 -11.37259 -11.27177 -11.07575 -10.95316 -10.93694 -10.68130 -10.62410 -10.02658 -9.55556 -9.34225 -8.92081 -8.56439 -8.52962 -7.70993 -7.53132 -7.02959 -4.59405 2.24808 2.90967 2.95531 3.01039 3.04690 3.74553 3.77196 3.83826 3.89419 4.57735 4.81160 4.93117 4.96786 5.12153 5.19472 5.34749 5.38226 5.52823 5.54950 5.57440 5.65360 5.70143 5.74053 5.82060 5.86877 5.94488 6.05307 6.07694 6.31542 6.33001 6.39866 6.77858 6.83570 6.85446 6.86089 6.99623 7.11079 7.14895 7.44777 7.67145 7.80976 7.87211 8.08207 8.29216 8.41050 8.64143 8.76414 9.12419 9.89069 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.017707 B = 0.003450 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.911196 B = 8114.346835 C = 9038.519393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.081 0.919 4 C -0.122 4.122 5 C 0.053 3.947 6 N -0.548 5.548 7 C 0.024 3.976 8 C 0.021 3.979 9 N -0.736 5.736 10 C 0.572 3.428 11 O -0.577 6.577 12 C -0.284 4.284 13 C -0.062 4.062 14 C -0.178 4.178 15 C 0.128 3.872 16 C -0.443 4.443 17 H 0.085 0.915 18 C 0.074 3.926 19 N -0.771 5.771 20 Si 0.912 3.088 21 H -0.257 1.257 22 H -0.269 1.269 23 H -0.272 1.272 24 C -0.239 4.239 25 C -0.022 4.022 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.034 0.966 33 H 0.024 0.976 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.024 0.976 39 H 0.397 0.603 40 H 0.089 0.911 41 H 0.120 0.880 42 H 0.286 0.714 43 H 0.097 0.903 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.996 1.083 13.930 14.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.100 0.900 4 C -0.160 4.160 5 C -0.075 4.075 6 N -0.272 5.272 7 C -0.125 4.125 8 C -0.128 4.128 9 N -0.389 5.389 10 C 0.367 3.633 11 O -0.459 6.459 12 C -0.289 4.289 13 C -0.082 4.082 14 C -0.198 4.198 15 C 0.125 3.875 16 C -0.471 4.471 17 H 0.103 0.897 18 C -0.147 4.147 19 N -0.395 5.395 20 Si 0.736 3.264 21 H -0.181 1.181 22 H -0.194 1.194 23 H -0.197 1.197 24 C -0.259 4.259 25 C -0.042 4.042 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.042 0.958 39 H 0.232 0.768 40 H 0.107 0.893 41 H 0.138 0.862 42 H 0.097 0.903 43 H 0.116 0.884 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.492 1.207 13.954 14.015 hybrid contribution 0.773 -0.230 -0.467 0.932 sum 1.264 0.977 13.487 13.582 Atomic orbital electron populations 1.22158 0.95711 1.01956 1.02111 1.20765 0.93752 0.97345 0.84186 0.90044 1.21893 0.94842 1.01917 0.97335 1.22188 0.95727 0.96637 0.92914 1.62007 1.11083 1.51579 1.02521 1.22385 0.87129 1.00117 1.02847 1.22439 1.01414 0.96419 0.92499 1.46020 1.69471 1.13966 1.09481 1.18576 0.75775 0.85987 0.82942 1.90621 1.53175 1.16575 1.85536 1.18926 1.21315 0.94953 0.93683 1.20478 0.97770 0.92830 0.97077 1.20972 1.06645 1.00348 0.91787 1.17786 0.86004 0.91085 0.92604 1.19875 1.31987 0.91937 1.03287 0.89718 1.26095 0.93752 0.98344 0.96490 1.69750 1.25128 1.11084 1.33501 0.86181 0.80370 0.79619 0.80234 1.18079 1.19386 1.19684 1.20716 1.11608 0.96273 0.97303 1.20361 0.94483 0.97630 0.91692 0.92364 0.92579 0.91895 0.90814 0.90550 0.90110 0.94749 0.95730 0.91502 0.91061 0.91092 0.91626 0.95773 0.76797 0.89323 0.86230 0.90298 0.88448 0.88184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.48 37.15 0.35 -1.73 16 2 C 0.15 2.00 2.57 -67.93 -0.17 1.83 16 3 H 0.08 1.26 7.58 -51.93 -0.39 0.87 16 4 C -0.12 -1.33 4.68 -26.73 -0.13 -1.46 16 5 C 0.05 0.62 4.85 -3.82 -0.02 0.60 16 6 N -0.55 -5.91 5.02 -251.26 -1.26 -7.17 16 7 C 0.02 0.23 9.57 60.06 0.57 0.80 16 8 C 0.02 0.18 9.32 60.06 0.56 0.74 16 9 N -0.74 -12.09 4.48 -54.82 -0.25 -12.33 16 10 C 0.57 12.04 7.73 -12.42 -0.10 11.94 16 11 O -0.58 -13.60 15.98 5.29 0.08 -13.52 16 12 C -0.28 -6.48 5.89 -104.73 -0.62 -7.09 16 13 C -0.06 -1.38 9.47 -39.61 -0.38 -1.75 16 14 C -0.18 -4.36 8.63 -39.27 -0.34 -4.70 16 15 C 0.13 3.27 5.58 -106.80 -0.60 2.68 16 16 C -0.44 -11.04 9.04 -37.74 -0.34 -11.38 16 17 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 18 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 19 N -0.77 -18.47 10.95 55.56 0.61 -17.86 16 20 Si 0.91 17.26 29.60 -169.99 -5.03 12.22 16 21 H -0.26 -4.85 7.11 56.52 0.40 -4.44 16 22 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 23 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 24 C -0.24 -5.82 9.73 -39.27 -0.38 -6.20 16 25 C -0.02 -0.53 9.52 -39.61 -0.38 -0.91 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 0.70 6.55 -51.93 -0.34 0.36 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.05 7.67 -51.93 -0.40 0.65 16 32 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 33 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 35 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 36 H 0.07 0.58 6.47 -51.93 -0.34 0.25 16 37 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 38 H 0.02 0.21 8.14 -51.92 -0.42 -0.21 16 39 H 0.40 5.97 6.60 -40.82 -0.27 5.70 16 40 H 0.09 1.67 6.37 -52.49 -0.33 1.33 16 41 H 0.12 2.97 6.16 -52.49 -0.32 2.64 16 42 H 0.29 6.13 8.29 -40.82 -0.34 5.79 16 43 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 44 H 0.10 2.30 7.63 -52.49 -0.40 1.90 16 LS Contribution 359.19 15.07 5.41 5.41 Total: -1.00 -28.06 359.19 -9.47 -37.53 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -6.99 Total: 10.70 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -2.04 Total: -14.98 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: -0.90 Total: -37.36 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.08 Total: -13.52 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.03 Total: 12.22 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.06 -9.47 -37.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270396698.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.909 kcal (2) G-P(sol) polarization free energy of solvation -28.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds