Wall clock time and date at job start Tue Mar 31 2020 08:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09003 * 109.47188 * 2 1 4 4 C 1.53007 * 109.47181 * 119.99488 * 2 1 3 5 5 C 1.53001 * 109.46920 * 185.00246 * 4 2 1 6 6 N 1.46908 * 109.46666 * 180.02562 * 5 4 2 7 7 C 1.46898 * 110.99592 * 170.00071 * 6 5 4 8 8 C 1.46892 * 110.99783 * 293.95303 * 6 5 4 9 9 N 1.46499 * 109.47591 * 239.99722 * 2 1 3 10 10 C 1.34777 * 119.99824 * 84.99511 * 9 2 1 11 11 O 1.21580 * 120.00336 * 0.02562 * 10 9 2 12 12 C 1.47639 * 119.99658 * 180.02562 * 10 9 2 13 13 C 1.40014 * 119.89956 * 359.72873 * 12 10 9 14 14 C 1.36316 * 120.10663 * 179.75636 * 13 12 10 15 15 C 1.40884 * 119.89324 * 0.51534 * 14 13 12 16 16 C 1.41112 * 120.10570 * 179.71313 * 15 14 13 17 17 H 1.07997 * 120.00313 * 204.64693 * 16 15 14 18 18 C 1.40231 * 119.99406 * 24.65049 * 16 15 14 19 19 N 1.30639 * 120.00206 * 17.87137 * 18 16 15 20 20 Si 1.86797 * 119.99604 * 197.87187 * 18 16 15 21 21 H 1.48499 * 109.47326 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47141 * 120.00009 * 20 18 16 23 23 H 1.48494 * 109.47457 * 240.00094 * 20 18 16 24 24 C 1.40885 * 119.79308 * 359.74150 * 15 14 13 25 25 C 1.36316 * 119.89344 * 359.97438 * 24 15 14 26 26 H 1.09000 * 109.47280 * 300.00247 * 1 2 3 27 27 H 1.09000 * 109.47517 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47342 * 60.00338 * 1 2 3 29 29 H 1.08996 * 109.46822 * 304.99961 * 4 2 1 30 30 H 1.08999 * 109.46684 * 65.00420 * 4 2 1 31 31 H 1.08996 * 109.47140 * 299.99520 * 5 4 2 32 32 H 1.08996 * 109.47605 * 60.00152 * 5 4 2 33 33 H 1.08997 * 109.47731 * 59.99842 * 7 6 5 34 34 H 1.08999 * 109.46759 * 179.97438 * 7 6 5 35 35 H 1.09007 * 109.47057 * 299.99814 * 7 6 5 36 36 H 1.09001 * 109.47743 * 60.00023 * 8 6 5 37 37 H 1.08998 * 109.47127 * 180.02562 * 8 6 5 38 38 H 1.09010 * 109.47281 * 299.99769 * 8 6 5 39 39 H 0.96999 * 120.00088 * 265.00323 * 9 2 1 40 40 H 1.07999 * 119.94385 * 0.02562 * 13 12 10 41 41 H 1.07997 * 120.05136 * 180.22898 * 14 13 12 42 42 H 0.97001 * 119.99693 * 179.97438 * 19 18 16 43 43 H 1.08004 * 120.05301 * 179.97438 * 24 15 14 44 44 H 1.08002 * 119.94846 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5648 -0.6131 1.3138 6 7 4.0545 -1.3061 2.5130 7 6 5.5180 -1.4299 2.4886 8 6 3.6040 -0.6261 3.7347 9 7 2.0183 -0.6906 -1.1961 10 6 2.1470 -0.0183 -2.3571 11 8 1.8582 1.1614 -2.4117 12 6 2.6387 -0.7145 -3.5626 13 6 2.9761 -2.0718 -3.4959 14 6 3.4258 -2.7200 -4.6076 15 6 3.5612 -2.0193 -5.8224 16 6 4.0321 -2.6844 -6.9744 17 1 4.5085 -2.1237 -7.7649 18 6 3.8813 -4.0736 -7.0927 19 7 3.0211 -4.7039 -6.3382 20 14 4.9104 -5.0227 -8.3294 21 1 5.8027 -4.0835 -9.0553 22 1 5.7317 -6.0344 -7.6172 23 1 4.0156 -5.7048 -9.2984 24 6 3.2256 -0.6524 -5.8832 25 6 2.7712 -0.0141 -4.7677 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 1.6053 -0.2616 2.1370 30 1 1.7516 -1.7714 1.2057 31 1 3.9994 -1.0727 0.4261 32 1 3.8531 0.4371 1.3574 33 1 5.9662 -0.4371 2.4512 34 1 5.8539 -1.9461 3.3879 35 1 5.8199 -1.9982 1.6087 36 1 2.5144 -0.6099 3.7609 37 1 3.9808 -1.1595 4.6074 38 1 3.9828 0.3960 3.7424 39 1 2.2490 -1.6318 -1.1525 40 1 2.8758 -2.6070 -2.5633 41 1 3.6823 -3.7678 -4.5561 42 1 2.9165 -5.6647 -6.4203 43 1 3.3281 -0.1111 -6.8122 44 1 2.5140 1.0339 -4.8133 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270396698.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:27 Heat of formation + Delta-G solvation = -47.014236 kcal Electronic energy + Delta-G solvation = -22705.094555 eV Core-core repulsion = 19427.618566 eV Total energy + Delta-G solvation = -3277.475989 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.91361 -39.19538 -38.55050 -36.60339 -35.65987 -33.10699 -31.54147 -31.26182 -30.11726 -28.47457 -27.66173 -25.59881 -24.01126 -22.86493 -22.29597 -21.63400 -21.22041 -19.35823 -18.41708 -17.48050 -17.02767 -16.44047 -16.20526 -15.89791 -15.73059 -15.66311 -15.34383 -15.06733 -14.51084 -14.30142 -14.14966 -13.91218 -13.68195 -13.62553 -13.26964 -13.18971 -12.97580 -12.83766 -12.75217 -12.62570 -12.58202 -12.37327 -12.04046 -11.91411 -11.75772 -11.67588 -11.36093 -11.11463 -10.64462 -10.01905 -9.56547 -9.39424 -9.34846 -8.78804 -6.47586 0.46018 1.15562 1.39029 1.42666 1.55702 2.14353 2.19079 2.44312 2.80200 2.95355 3.70034 3.87599 3.98773 4.05025 4.27570 4.32304 4.35060 4.43005 4.44271 4.46082 4.54382 4.64870 4.71724 4.73240 4.83970 4.90082 4.93226 4.99338 5.01272 5.03742 5.11907 5.16643 5.23093 5.31291 5.32656 5.59034 5.70865 5.84051 5.96110 6.00379 6.02678 6.09286 6.23599 6.54888 6.75842 6.78230 6.90073 7.49756 8.16623 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.017707 B = 0.003450 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.911196 B = 8114.346835 C = 9038.519393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.143 3.857 3 H 0.064 0.936 4 C -0.107 4.107 5 C 0.055 3.945 6 N -0.557 5.557 7 C 0.022 3.978 8 C 0.019 3.981 9 N -0.719 5.719 10 C 0.573 3.427 11 O -0.606 6.606 12 C -0.293 4.293 13 C -0.053 4.053 14 C -0.197 4.197 15 C 0.102 3.898 16 C -0.474 4.474 17 H 0.084 0.916 18 C 0.038 3.962 19 N -0.798 5.798 20 Si 0.987 3.013 21 H -0.258 1.258 22 H -0.260 1.260 23 H -0.264 1.264 24 C -0.254 4.254 25 C -0.034 4.034 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.032 0.968 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.025 0.975 33 H 0.022 0.978 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.023 0.977 39 H 0.405 0.595 40 H 0.123 0.877 41 H 0.114 0.886 42 H 0.297 0.703 43 H 0.103 0.897 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.985 -0.230 15.577 15.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.038 3.962 3 H 0.082 0.918 4 C -0.145 4.145 5 C -0.073 4.073 6 N -0.280 5.280 7 C -0.126 4.126 8 C -0.129 4.129 9 N -0.371 5.371 10 C 0.366 3.634 11 O -0.491 6.491 12 C -0.298 4.298 13 C -0.072 4.072 14 C -0.217 4.217 15 C 0.099 3.901 16 C -0.502 4.502 17 H 0.102 0.898 18 C -0.181 4.181 19 N -0.421 5.421 20 Si 0.807 3.193 21 H -0.181 1.181 22 H -0.184 1.184 23 H -0.188 1.188 24 C -0.274 4.274 25 C -0.053 4.053 26 H 0.105 0.895 27 H 0.085 0.915 28 H 0.051 0.949 29 H 0.115 0.885 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.043 0.957 33 H 0.041 0.959 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.042 0.958 39 H 0.242 0.758 40 H 0.140 0.860 41 H 0.131 0.869 42 H 0.108 0.892 43 H 0.121 0.879 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.468 -0.119 15.648 15.655 hybrid contribution 0.735 0.221 -0.872 1.162 sum 1.203 0.102 14.775 14.825 Atomic orbital electron populations 1.22115 0.94617 1.02654 1.02070 1.20968 0.94547 0.96591 0.84054 0.91800 1.21788 0.94248 1.02090 0.96407 1.22106 0.96181 0.96001 0.93011 1.62034 1.11608 1.51664 1.02743 1.22424 0.86736 1.00127 1.03345 1.22519 1.02022 0.96405 0.91983 1.45908 1.67927 1.14228 1.09014 1.18359 0.75740 0.85569 0.83705 1.90604 1.54583 1.17767 1.86140 1.19228 1.20845 0.95409 0.94279 1.20716 0.96071 0.92560 0.97812 1.21005 1.08110 1.00233 0.92330 1.18127 0.86757 0.91711 0.93542 1.20128 1.33179 0.93361 1.03503 0.89798 1.26915 0.94346 0.98482 0.98339 1.69764 1.25736 1.12020 1.34596 0.85071 0.78547 0.77999 0.77675 1.18129 1.18395 1.18845 1.20854 1.12275 0.96362 0.97886 1.20506 0.94693 0.97865 0.92223 0.89486 0.91471 0.94886 0.88494 0.89758 0.91792 0.95694 0.95907 0.89942 0.91743 0.90194 0.90370 0.95846 0.75775 0.85957 0.86858 0.89188 0.87927 0.88084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 9.48 71.98 0.68 -3.04 16 2 C 0.14 3.71 2.57 44.99 0.12 3.83 16 3 H 0.06 1.93 7.58 -2.39 -0.02 1.91 16 4 C -0.11 -2.07 4.68 30.60 0.14 -1.92 16 5 C 0.06 1.20 4.85 86.30 0.42 1.62 16 6 N -0.56 -10.83 5.02 -948.84 -4.76 -15.59 16 7 C 0.02 0.39 9.57 127.69 1.22 1.61 16 8 C 0.02 0.28 9.32 127.69 1.19 1.47 16 9 N -0.72 -22.78 4.48 -445.60 -2.00 -24.78 16 10 C 0.57 24.05 7.73 86.73 0.67 24.72 16 11 O -0.61 -28.90 15.98 -3.97 -0.06 -28.97 16 12 C -0.29 -13.45 5.89 -19.93 -0.12 -13.57 16 13 C -0.05 -2.31 9.47 22.25 0.21 -2.10 16 14 C -0.20 -9.79 8.63 22.47 0.19 -9.59 16 15 C 0.10 5.32 5.58 -21.28 -0.12 5.21 16 16 C -0.47 -24.12 9.04 23.46 0.21 -23.91 16 17 H 0.08 4.11 7.91 -2.91 -0.02 4.09 16 18 C 0.04 1.78 5.14 85.35 0.44 2.22 16 19 N -0.80 -38.15 10.95 21.87 0.24 -37.91 16 20 Si 0.99 34.87 29.60 68.60 2.03 36.90 16 21 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 22 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 23 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 24 C -0.25 -12.77 9.73 22.47 0.22 -12.56 16 25 C -0.03 -1.64 9.52 22.25 0.21 -1.42 16 26 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.10 1.48 6.55 -2.39 -0.02 1.47 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 1.59 7.67 -2.39 -0.02 1.58 16 32 H 0.02 0.58 8.12 -2.39 -0.02 0.57 16 33 H 0.02 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.08 1.20 8.12 -2.39 -0.02 1.18 16 35 H 0.06 1.22 8.12 -2.38 -0.02 1.20 16 36 H 0.08 1.04 6.47 -2.39 -0.02 1.03 16 37 H 0.08 0.98 8.12 -2.39 -0.02 0.96 16 38 H 0.02 0.36 8.14 -2.38 -0.02 0.34 16 39 H 0.41 11.45 6.60 -92.71 -0.61 10.83 16 40 H 0.12 4.40 6.37 -2.91 -0.02 4.39 16 41 H 0.11 5.69 6.16 -2.91 -0.02 5.67 16 42 H 0.30 12.55 8.29 -92.71 -0.77 11.79 16 43 H 0.10 4.86 8.06 -2.91 -0.02 4.83 16 44 H 0.10 4.79 7.63 -2.91 -0.02 4.77 16 Total: -1.00 -61.42 359.19 1.51 -59.90 By element: Atomic # 1 Polarization: 37.53 SS G_CDS: 0.37 Total: 37.90 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: 5.69 Total: -27.46 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: -6.52 Total: -78.28 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -0.06 Total: -28.97 kcal Atomic # 14 Polarization: 34.87 SS G_CDS: 2.03 Total: 36.90 kcal Total: -61.42 1.51 -59.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270396698.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.888 kcal (2) G-P(sol) polarization free energy of solvation -61.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds