Wall clock time and date at job start Tue Mar 31 2020 08:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34780 * 120.00046 * 2 1 4 4 O 1.21285 * 119.99755 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00328 * 180.02562 * 3 2 1 6 6 C 1.52993 * 109.47493 * 180.02562 * 5 3 2 7 7 H 1.09000 * 109.47478 * 54.99247 * 6 5 3 8 8 C 1.52996 * 109.47423 * 175.00088 * 6 5 3 9 9 N 1.46908 * 109.46727 * 294.99732 * 6 5 3 10 10 C 1.46901 * 110.99860 * 154.99903 * 9 6 5 11 11 H 1.09001 * 109.46907 * 34.99904 * 10 9 6 12 12 C 1.53001 * 109.47056 * 154.99847 * 10 9 6 13 13 C 1.50694 * 109.47168 * 295.00102 * 12 10 9 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 12 10 15 15 C 1.37885 * 119.99902 * 179.97438 * 13 12 10 16 16 N 1.31518 * 119.99792 * 179.72330 * 15 13 12 17 17 Si 1.86795 * 120.00009 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47088 * 89.99795 * 17 15 13 19 19 H 1.48495 * 109.47293 * 209.99997 * 17 15 13 20 20 H 1.48507 * 109.47015 * 329.99955 * 17 15 13 21 21 C 1.50699 * 109.47208 * 275.00205 * 10 9 6 22 22 C 1.38234 * 119.99870 * 319.72329 * 21 10 9 23 23 C 1.38233 * 120.00175 * 179.78690 * 22 21 10 24 24 C 1.38238 * 119.99615 * 0.44506 * 23 22 21 25 25 C 1.38235 * 120.00027 * 359.81511 * 24 23 22 26 26 C 1.38225 * 119.99922 * 359.96982 * 25 24 23 27 27 H 1.08994 * 109.47033 * 300.00131 * 1 2 3 28 28 H 1.08998 * 109.46853 * 60.00243 * 1 2 3 29 29 H 1.08997 * 109.47159 * 180.02562 * 1 2 3 30 30 H 0.97001 * 120.00200 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47348 * 59.99527 * 5 3 2 32 32 H 1.09004 * 109.47079 * 299.99984 * 5 3 2 33 33 H 1.08997 * 109.47346 * 179.97438 * 8 6 5 34 34 H 1.08997 * 109.47067 * 299.99510 * 8 6 5 35 35 H 1.09006 * 109.47495 * 59.99605 * 8 6 5 36 36 H 1.00899 * 110.99950 * 31.04865 * 9 6 5 37 37 H 1.08998 * 109.46837 * 175.00123 * 12 10 9 38 38 H 1.09002 * 109.46926 * 54.99927 * 12 10 9 39 39 H 0.97000 * 119.99468 * 179.97438 * 16 15 13 40 40 H 1.08007 * 119.99787 * 0.02562 * 22 21 10 41 41 H 1.07996 * 120.00370 * 180.27901 * 23 22 21 42 42 H 1.08000 * 119.99993 * 179.82958 * 24 23 22 43 43 H 1.08001 * 119.99654 * 180.02562 * 25 24 23 44 44 H 1.08004 * 119.99882 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2176 0.0005 5 6 3.6459 1.1673 -0.0006 6 6 4.1559 2.6097 0.0002 7 1 3.7215 3.1483 0.8424 8 6 5.6807 2.6115 0.1253 9 7 3.7668 3.2673 -1.2546 10 6 3.6880 4.7241 -1.0830 11 1 4.4578 5.0497 -0.3834 12 6 3.9039 5.4091 -2.4340 13 6 5.3062 5.1396 -2.9154 14 1 5.9767 4.5401 -2.3175 15 6 5.7335 5.6585 -4.1193 16 7 6.9591 5.4278 -4.5369 17 14 4.5742 6.6960 -5.1533 18 1 4.7143 8.1242 -4.7714 19 1 4.9116 6.5323 -6.5901 20 1 3.1750 6.2562 -4.9201 21 6 2.3302 5.0937 -0.5436 22 6 1.2007 4.4523 -1.0165 23 6 -0.0444 4.7882 -0.5186 24 6 -0.1607 5.7720 0.4456 25 6 0.9683 6.4172 0.9145 26 6 2.2137 6.0781 0.4198 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.9501 -0.8400 -0.0004 31 1 4.0089 0.6536 -0.8908 32 1 4.0096 0.6533 0.8892 33 1 6.0441 3.6391 0.1254 34 1 5.9694 2.1237 1.0562 35 1 6.1151 2.0730 -0.7170 36 1 2.8950 2.8964 -1.6019 37 1 3.7577 6.4836 -2.3239 38 1 3.1896 5.0175 -3.1582 39 1 7.2595 5.7925 -5.3840 40 1 1.2913 3.6860 -1.7722 41 1 -0.9264 4.2840 -0.8847 42 1 -1.1337 6.0364 0.8326 43 1 0.8774 7.1855 1.6681 44 1 3.0959 6.5819 0.7865 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271495671.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:53 Heat of formation + Delta-G solvation = -11.736858 kcal Electronic energy + Delta-G solvation = -24176.059444 eV Core-core repulsion = 20900.113197 eV Total energy + Delta-G solvation = -3275.946247 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.93629 -38.85195 -36.45869 -34.55366 -33.56648 -32.05668 -30.42354 -29.36539 -28.84678 -28.06349 -25.94065 -24.25195 -22.14683 -21.46969 -20.96909 -19.86935 -19.39306 -17.20154 -16.97272 -16.22200 -15.97049 -15.76972 -14.91823 -14.71904 -14.28238 -14.21512 -13.88793 -13.65433 -13.07712 -12.93025 -12.74565 -12.56115 -12.43118 -12.34813 -12.11903 -11.76103 -11.72637 -11.45532 -11.08067 -11.03756 -10.70652 -10.66169 -10.46405 -10.10790 -9.90953 -9.68032 -9.54761 -9.18886 -8.95586 -8.35961 -8.31821 -8.01333 -7.55172 -5.84622 -3.77489 1.92779 1.97749 2.71506 3.19813 3.42355 3.49546 3.55453 4.37349 4.61969 4.73687 4.81785 5.00828 5.13801 5.34034 5.36183 5.37353 5.46626 5.48977 5.54786 5.59097 5.63609 5.67222 5.93107 6.02172 6.04096 6.07393 6.18467 6.25663 6.32438 6.46275 6.54253 6.61034 6.75906 6.88688 6.96436 7.02023 7.18895 7.27963 7.39782 7.42511 7.55872 7.92473 8.01386 8.19457 8.30245 8.79150 9.27210 9.79410 11.29252 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.012992 B = 0.006089 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.723762 B = 4597.061025 C = 5652.214969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.742 5.742 3 C 0.501 3.499 4 O -0.516 6.516 5 C -0.145 4.145 6 C 0.100 3.900 7 H 0.044 0.956 8 C -0.138 4.138 9 N -0.651 5.651 10 C 0.143 3.857 11 H 0.076 0.924 12 C 0.003 3.997 13 C -0.484 4.484 14 H 0.080 0.920 15 C 0.062 3.938 16 N -0.910 5.910 17 Si 0.870 3.130 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.268 1.268 21 C -0.096 4.096 22 C -0.063 4.063 23 C -0.117 4.117 24 C -0.136 4.136 25 C -0.132 4.132 26 C -0.119 4.119 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.399 0.601 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.064 0.936 36 H 0.336 0.664 37 H 0.012 0.988 38 H 0.016 0.984 39 H 0.258 0.742 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.372 -10.661 12.100 20.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.395 5.395 3 C 0.288 3.712 4 O -0.391 6.391 5 C -0.185 4.185 6 C -0.011 4.011 7 H 0.062 0.938 8 C -0.196 4.196 9 N -0.284 5.284 10 C 0.033 3.967 11 H 0.094 0.906 12 C -0.035 4.035 13 C -0.523 4.523 14 H 0.098 0.902 15 C -0.137 4.137 16 N -0.551 5.551 17 Si 0.699 3.301 18 H -0.207 1.207 19 H -0.217 1.217 20 H -0.192 1.192 21 C -0.098 4.098 22 C -0.081 4.081 23 C -0.136 4.136 24 C -0.154 4.154 25 C -0.150 4.150 26 C -0.137 4.137 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.232 0.768 31 H 0.120 0.880 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.157 0.843 37 H 0.030 0.970 38 H 0.034 0.966 39 H 0.068 0.932 40 H 0.130 0.870 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.128 0.872 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.063 -9.853 11.694 19.477 hybrid contribution -1.286 0.125 -0.139 1.299 sum -13.348 -9.728 11.556 20.158 Atomic orbital electron populations 1.21457 0.80114 1.01657 1.02203 1.45870 1.07507 1.08886 1.77201 1.21082 0.90747 0.83712 0.75679 1.90836 1.70368 1.30313 1.47616 1.21953 0.91173 1.00750 1.04610 1.21209 0.95766 0.90990 0.93091 0.93841 1.21791 0.94467 1.02943 1.00378 1.60822 1.37769 1.03703 1.26065 1.20626 0.89855 0.87438 0.98804 0.90612 1.19580 0.98371 0.94168 0.91364 1.21035 0.95800 1.30819 1.04604 0.90212 1.24970 0.94765 0.96393 0.97620 1.69911 1.16723 1.46849 1.21593 0.86927 0.82370 0.81144 0.79691 1.20657 1.21729 1.19238 1.21022 0.97679 0.95705 0.95412 1.20636 0.91789 0.97211 0.98481 1.20872 0.97181 0.97774 0.97734 1.20915 0.97754 0.97996 0.98761 1.20943 0.92950 1.00406 1.00702 1.21000 0.97149 0.97979 0.97608 0.92535 0.92334 0.91195 0.76789 0.88020 0.88903 0.91810 0.93779 0.91666 0.84314 0.96981 0.96613 0.93188 0.87000 0.87453 0.87402 0.87180 0.86740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.74 10.70 59.85 0.64 1.38 16 2 N -0.74 -6.65 5.71 -67.08 -0.38 -7.04 16 3 C 0.50 6.24 7.30 -10.99 -0.08 6.16 16 4 O -0.52 -8.15 10.69 5.55 0.06 -8.09 16 5 C -0.14 -1.69 5.30 -27.89 -0.15 -1.84 16 6 C 0.10 1.56 2.02 -67.71 -0.14 1.43 16 7 H 0.04 0.74 7.45 -51.93 -0.39 0.35 16 8 C -0.14 -2.13 9.40 37.16 0.35 -1.78 16 9 N -0.65 -12.37 5.63 -100.95 -0.57 -12.94 16 10 C 0.14 2.96 1.98 -68.86 -0.14 2.82 16 11 H 0.08 1.61 6.97 -51.93 -0.36 1.25 16 12 C 0.00 0.07 3.70 -27.89 -0.10 -0.03 16 13 C -0.48 -13.82 9.39 -34.44 -0.32 -14.15 16 14 H 0.08 2.43 7.99 -52.49 -0.42 2.01 16 15 C 0.06 1.83 5.47 -17.82 -0.10 1.73 16 16 N -0.91 -28.52 13.96 55.43 0.77 -27.74 16 17 Si 0.87 22.58 27.47 -169.99 -4.67 17.91 16 18 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 20 H -0.27 -6.79 6.54 56.52 0.37 -6.42 16 21 C -0.10 -1.83 4.50 -104.63 -0.47 -2.31 16 22 C -0.06 -1.14 6.09 -39.58 -0.24 -1.38 16 23 C -0.12 -1.92 10.00 -39.58 -0.40 -2.31 16 24 C -0.14 -2.09 10.05 -39.58 -0.40 -2.49 16 25 C -0.13 -2.08 10.05 -39.59 -0.40 -2.48 16 26 C -0.12 -2.09 9.67 -39.59 -0.38 -2.48 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.40 2.40 8.83 -40.82 -0.36 2.04 16 31 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 1.13 7.43 -51.93 -0.39 0.74 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.34 6.30 4.47 -39.29 -0.18 6.12 16 37 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 38 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 39 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 40 H 0.11 2.09 6.09 -52.48 -0.32 1.77 16 41 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 44 H 0.11 1.89 8.04 -52.48 -0.42 1.47 16 LS Contribution 351.32 15.07 5.29 5.29 Total: -1.00 -33.66 351.32 -8.81 -42.47 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -6.99 Total: 7.86 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -2.32 Total: -17.72 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: -0.18 Total: -47.72 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.06 Total: -8.09 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.67 Total: 17.91 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.66 -8.81 -42.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271495671.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.731 kcal (2) G-P(sol) polarization free energy of solvation -33.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds