Wall clock time and date at job start Tue Mar 31 2020 08:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34780 * 120.00046 * 2 1 4 4 O 1.21285 * 119.99755 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00328 * 180.02562 * 3 2 1 6 6 C 1.52993 * 109.47493 * 180.02562 * 5 3 2 7 7 H 1.09000 * 109.47478 * 54.99247 * 6 5 3 8 8 C 1.52996 * 109.47423 * 175.00088 * 6 5 3 9 9 N 1.46908 * 109.46727 * 294.99732 * 6 5 3 10 10 C 1.46901 * 110.99860 * 154.99903 * 9 6 5 11 11 H 1.09001 * 109.46907 * 34.99904 * 10 9 6 12 12 C 1.53001 * 109.47056 * 154.99847 * 10 9 6 13 13 C 1.50694 * 109.47168 * 295.00102 * 12 10 9 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 12 10 15 15 C 1.37885 * 119.99902 * 179.97438 * 13 12 10 16 16 N 1.31518 * 119.99792 * 179.72330 * 15 13 12 17 17 Si 1.86795 * 120.00009 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47088 * 89.99795 * 17 15 13 19 19 H 1.48495 * 109.47293 * 209.99997 * 17 15 13 20 20 H 1.48507 * 109.47015 * 329.99955 * 17 15 13 21 21 C 1.50699 * 109.47208 * 275.00205 * 10 9 6 22 22 C 1.38234 * 119.99870 * 319.72329 * 21 10 9 23 23 C 1.38233 * 120.00175 * 179.78690 * 22 21 10 24 24 C 1.38238 * 119.99615 * 0.44506 * 23 22 21 25 25 C 1.38235 * 120.00027 * 359.81511 * 24 23 22 26 26 C 1.38225 * 119.99922 * 359.96982 * 25 24 23 27 27 H 1.08994 * 109.47033 * 300.00131 * 1 2 3 28 28 H 1.08998 * 109.46853 * 60.00243 * 1 2 3 29 29 H 1.08997 * 109.47159 * 180.02562 * 1 2 3 30 30 H 0.97001 * 120.00200 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47348 * 59.99527 * 5 3 2 32 32 H 1.09004 * 109.47079 * 299.99984 * 5 3 2 33 33 H 1.08997 * 109.47346 * 179.97438 * 8 6 5 34 34 H 1.08997 * 109.47067 * 299.99510 * 8 6 5 35 35 H 1.09006 * 109.47495 * 59.99605 * 8 6 5 36 36 H 1.00899 * 110.99950 * 31.04865 * 9 6 5 37 37 H 1.08998 * 109.46837 * 175.00123 * 12 10 9 38 38 H 1.09002 * 109.46926 * 54.99927 * 12 10 9 39 39 H 0.97000 * 119.99468 * 179.97438 * 16 15 13 40 40 H 1.08007 * 119.99787 * 0.02562 * 22 21 10 41 41 H 1.07996 * 120.00370 * 180.27901 * 23 22 21 42 42 H 1.08000 * 119.99993 * 179.82958 * 24 23 22 43 43 H 1.08001 * 119.99654 * 180.02562 * 25 24 23 44 44 H 1.08004 * 119.99882 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2176 0.0005 5 6 3.6459 1.1673 -0.0006 6 6 4.1559 2.6097 0.0002 7 1 3.7215 3.1483 0.8424 8 6 5.6807 2.6115 0.1253 9 7 3.7668 3.2673 -1.2546 10 6 3.6880 4.7241 -1.0830 11 1 4.4578 5.0497 -0.3834 12 6 3.9039 5.4091 -2.4340 13 6 5.3062 5.1396 -2.9154 14 1 5.9767 4.5401 -2.3175 15 6 5.7335 5.6585 -4.1193 16 7 6.9591 5.4278 -4.5369 17 14 4.5742 6.6960 -5.1533 18 1 4.7143 8.1242 -4.7714 19 1 4.9116 6.5323 -6.5901 20 1 3.1750 6.2562 -4.9201 21 6 2.3302 5.0937 -0.5436 22 6 1.2007 4.4523 -1.0165 23 6 -0.0444 4.7882 -0.5186 24 6 -0.1607 5.7720 0.4456 25 6 0.9683 6.4172 0.9145 26 6 2.2137 6.0781 0.4198 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.9501 -0.8400 -0.0004 31 1 4.0089 0.6536 -0.8908 32 1 4.0096 0.6533 0.8892 33 1 6.0441 3.6391 0.1254 34 1 5.9694 2.1237 1.0562 35 1 6.1151 2.0730 -0.7170 36 1 2.8950 2.8964 -1.6019 37 1 3.7577 6.4836 -2.3239 38 1 3.1896 5.0175 -3.1582 39 1 7.2595 5.7925 -5.3840 40 1 1.2913 3.6860 -1.7722 41 1 -0.9264 4.2840 -0.8847 42 1 -1.1337 6.0364 0.8326 43 1 0.8774 7.1855 1.6681 44 1 3.0959 6.5819 0.7865 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271495671.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:51 Heat of formation + Delta-G solvation = -34.945497 kcal Electronic energy + Delta-G solvation = -24177.065846 eV Core-core repulsion = 20900.113197 eV Total energy + Delta-G solvation = -3276.952649 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -41.03872 -40.08623 -37.78662 -35.49091 -35.21655 -33.97911 -31.71456 -30.85353 -30.31155 -29.38325 -26.86452 -25.96503 -23.54683 -23.08708 -22.06826 -21.09116 -20.85449 -18.92967 -18.10318 -17.78278 -17.04303 -16.89504 -16.29956 -15.97120 -15.93665 -15.57474 -15.17864 -14.96312 -14.66084 -14.22867 -14.12418 -13.98225 -13.85588 -13.62741 -13.21896 -13.08296 -12.96309 -12.76953 -12.73267 -12.60150 -12.28682 -12.11725 -11.94979 -11.70936 -11.58020 -11.48254 -11.14679 -10.72008 -10.66071 -10.00479 -9.61453 -9.39369 -9.02188 -8.16060 -6.13240 0.61207 0.69009 1.35240 1.36764 1.48756 1.78049 2.40997 2.42514 3.06075 3.17004 3.46499 3.83457 3.96358 4.07651 4.10731 4.24686 4.35109 4.43049 4.45246 4.52896 4.63410 4.66691 4.74460 4.76421 4.81558 4.85655 4.94458 4.97185 4.99944 5.19941 5.21752 5.26031 5.28103 5.46910 5.51807 5.57526 5.67335 5.72348 5.77461 5.86598 6.27296 6.39894 6.53931 6.65973 6.76236 6.93455 7.41652 7.46746 9.00727 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.012992 B = 0.006089 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.723762 B = 4597.061025 C = 5652.214969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.727 5.727 3 C 0.495 3.505 4 O -0.553 6.553 5 C -0.136 4.136 6 C 0.102 3.898 7 H 0.030 0.970 8 C -0.132 4.132 9 N -0.666 5.666 10 C 0.154 3.846 11 H 0.059 0.941 12 C 0.010 3.990 13 C -0.482 4.482 14 H 0.046 0.954 15 C 0.004 3.996 16 N -0.953 5.953 17 Si 0.935 3.065 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.259 1.259 21 C -0.115 4.115 22 C -0.069 4.069 23 C -0.122 4.122 24 C -0.130 4.130 25 C -0.131 4.131 26 C -0.135 4.135 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.105 0.895 30 H 0.416 0.584 31 H 0.109 0.891 32 H 0.127 0.873 33 H 0.030 0.970 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.336 0.664 37 H 0.008 0.992 38 H 0.008 0.992 39 H 0.261 0.739 40 H 0.100 0.900 41 H 0.127 0.873 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.948 -11.373 13.192 22.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.380 5.380 3 C 0.282 3.718 4 O -0.431 6.431 5 C -0.176 4.176 6 C -0.008 4.008 7 H 0.048 0.952 8 C -0.189 4.189 9 N -0.299 5.299 10 C 0.044 3.956 11 H 0.077 0.923 12 C -0.028 4.028 13 C -0.520 4.520 14 H 0.064 0.936 15 C -0.191 4.191 16 N -0.596 5.596 17 Si 0.760 3.240 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.183 1.183 21 C -0.117 4.117 22 C -0.087 4.087 23 C -0.140 4.140 24 C -0.148 4.148 25 C -0.149 4.149 26 C -0.154 4.154 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.123 0.877 30 H 0.252 0.748 31 H 0.127 0.873 32 H 0.145 0.855 33 H 0.049 0.951 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.157 0.843 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.070 0.930 40 H 0.118 0.882 41 H 0.145 0.855 42 H 0.160 0.840 43 H 0.157 0.843 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.645 -10.612 12.802 22.158 hybrid contribution -0.473 0.268 -0.392 0.670 sum -15.118 -10.345 12.410 22.127 Atomic orbital electron populations 1.21544 0.79348 1.03603 1.00979 1.45743 1.08021 1.08656 1.75542 1.21176 0.90979 0.84120 0.75522 1.90818 1.70949 1.31787 1.49560 1.21865 0.91099 0.98054 1.06580 1.21195 0.95482 0.93162 0.90985 0.95204 1.21740 0.94509 1.01029 1.01672 1.60756 1.37838 1.02966 1.28310 1.20224 0.90975 0.88427 0.96021 0.92310 1.19455 0.95541 0.94247 0.93523 1.21226 0.97128 1.29546 1.04116 0.93563 1.25785 0.96323 0.97923 0.99103 1.70053 1.18688 1.48517 1.22339 0.85886 0.80460 0.79616 0.77991 1.19720 1.21109 1.18328 1.20808 0.96648 0.97249 0.96984 1.20578 0.92452 0.97066 0.98632 1.21144 0.97000 0.98063 0.97790 1.21327 0.99153 0.96746 0.97610 1.21281 0.92109 1.00723 1.00783 1.21175 0.98462 0.97928 0.97802 0.93548 0.93772 0.87660 0.74817 0.87330 0.85488 0.95098 0.90161 0.92984 0.84259 0.97420 0.97402 0.93047 0.88236 0.85472 0.84005 0.84253 0.86605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.28 10.70 127.77 1.37 2.65 16 2 N -0.73 -11.42 5.71 -484.53 -2.77 -14.19 16 3 C 0.49 11.71 7.30 87.65 0.64 12.35 16 4 O -0.55 -17.22 10.69 -3.04 -0.03 -17.25 16 5 C -0.14 -3.00 5.30 29.84 0.16 -2.84 16 6 C 0.10 3.23 2.02 44.91 0.09 3.32 16 7 H 0.03 1.04 7.45 -2.39 -0.02 1.02 16 8 C -0.13 -4.18 9.40 71.98 0.68 -3.50 16 9 N -0.67 -26.25 5.63 -473.30 -2.66 -28.91 16 10 C 0.15 6.65 1.98 44.17 0.09 6.74 16 11 H 0.06 2.67 6.97 -2.39 -0.02 2.66 16 12 C 0.01 0.52 3.70 29.85 0.11 0.63 16 13 C -0.48 -28.63 9.39 25.60 0.24 -28.39 16 14 H 0.05 2.99 7.99 -2.91 -0.02 2.97 16 15 C 0.00 0.23 5.47 84.66 0.46 0.69 16 16 N -0.95 -61.50 13.96 21.45 0.30 -61.21 16 17 Si 0.93 47.25 27.47 68.60 1.88 49.13 16 18 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 19 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 20 H -0.26 -12.63 6.54 99.48 0.65 -11.98 16 21 C -0.12 -4.43 4.50 -19.87 -0.09 -4.52 16 22 C -0.07 -2.49 6.09 22.27 0.14 -2.35 16 23 C -0.12 -3.75 10.00 22.27 0.22 -3.53 16 24 C -0.13 -3.61 10.05 22.27 0.22 -3.38 16 25 C -0.13 -3.82 10.05 22.27 0.22 -3.60 16 26 C -0.13 -4.71 9.67 22.27 0.22 -4.49 16 27 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.42 3.75 8.83 -92.71 -0.82 2.93 16 31 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.03 1.15 7.43 -2.39 -0.02 1.13 16 34 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.34 13.00 4.47 -89.69 -0.40 12.60 16 37 H 0.01 0.39 7.57 -2.39 -0.02 0.37 16 38 H 0.01 0.40 7.20 -2.39 -0.02 0.39 16 39 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 40 H 0.10 3.78 6.09 -2.91 -0.02 3.76 16 41 H 0.13 3.33 8.06 -2.91 -0.02 3.31 16 42 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 43 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 44 H 0.12 3.87 8.04 -2.91 -0.02 3.84 16 Total: -1.00 -75.60 351.32 1.20 -74.39 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: -0.28 Total: 28.26 kcal Atomic # 6 Polarization: -35.00 SS G_CDS: 4.77 Total: -30.23 kcal Atomic # 7 Polarization: -99.17 SS G_CDS: -5.13 Total: -104.30 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.03 Total: -17.25 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 1.88 Total: 49.13 kcal Total: -75.60 1.20 -74.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271495671.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.449 kcal (2) G-P(sol) polarization free energy of solvation -75.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds