Wall clock time and date at job start Tue Mar 31 2020 08:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 N 1.46500 * 109.47170 * 65.00312 * 4 2 1 6 6 C 1.46500 * 120.00201 * 270.00067 * 5 4 2 7 7 C 1.34777 * 120.00042 * 89.99444 * 5 4 2 8 8 O 1.21589 * 119.99933 * 0.02562 * 7 5 4 9 9 N 1.34774 * 119.99919 * 180.02562 * 7 5 4 10 10 C 1.46506 * 119.99961 * 180.02562 * 9 7 5 11 11 C 1.53003 * 109.46979 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.46916 * 180.02562 * 11 10 9 13 13 H 1.08005 * 120.00317 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00120 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99883 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00272 * 179.97438 * 14 12 11 17 17 H 1.48510 * 109.46902 * 59.99509 * 16 14 12 18 18 H 1.48497 * 109.47348 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46878 * 300.00228 * 16 14 12 20 20 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 21 21 C 1.38238 * 120.00152 * 59.72667 * 20 2 1 22 22 C 1.38228 * 119.99981 * 179.78971 * 21 20 2 23 23 C 1.38233 * 120.00446 * 0.43942 * 22 21 20 24 24 C 1.38237 * 119.99774 * 359.81149 * 23 22 21 25 25 C 1.38236 * 120.00068 * 239.99787 * 20 2 1 26 26 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 29 29 H 1.09000 * 109.46875 * 184.99989 * 4 2 1 30 30 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 31 31 H 1.09008 * 109.47240 * 89.99557 * 6 5 4 32 32 H 1.08993 * 109.47538 * 210.00004 * 6 5 4 33 33 H 1.09005 * 109.47027 * 329.99946 * 6 5 4 34 34 H 0.96998 * 120.00536 * 0.02562 * 9 7 5 35 35 H 1.08993 * 109.46970 * 300.00020 * 10 9 7 36 36 H 1.09000 * 109.47059 * 60.00096 * 10 9 7 37 37 H 1.08993 * 109.47328 * 299.99853 * 11 10 9 38 38 H 1.09000 * 109.47104 * 60.00175 * 11 10 9 39 39 H 0.97000 * 120.00018 * 180.02562 * 15 14 12 40 40 H 1.08004 * 119.99897 * 359.97438 * 21 20 2 41 41 H 1.07998 * 120.00272 * 180.27611 * 22 21 20 42 42 H 1.08003 * 120.00641 * 179.83923 * 23 22 21 43 43 H 1.07999 * 120.00221 * 180.02562 * 24 23 22 44 44 H 1.08004 * 119.99815 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6526 0.0353 -2.4424 6 6 0.3747 -0.2423 -3.1028 7 6 2.4716 0.9868 -2.9324 8 8 3.5324 1.2170 -2.3845 9 7 2.1149 1.6832 -4.0298 10 6 3.0055 2.7172 -4.5628 11 6 2.3686 3.3495 -5.8020 12 6 3.2850 4.4127 -6.3506 13 1 4.2276 4.6166 -5.8644 14 6 2.9201 5.1250 -7.4733 15 7 1.7726 4.8763 -8.0657 16 14 4.0557 6.4433 -8.1530 17 1 5.3577 5.8324 -8.5231 18 1 3.4377 7.0570 -9.3557 19 1 4.2748 7.4881 -7.1207 20 6 2.0323 -0.7104 1.2305 21 6 1.6937 -2.0322 1.4521 22 6 2.1580 -2.6851 2.5786 23 6 2.9535 -2.0136 3.4881 24 6 3.2879 -0.6903 3.2692 25 6 2.8271 -0.0386 2.1404 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.1264 -0.7995 -1.2055 30 1 1.6054 -1.7198 -1.2951 31 1 -0.4017 0.3903 -2.6725 32 1 0.4638 -0.0339 -4.1689 33 1 0.1111 -1.2901 -2.9583 34 1 1.2685 1.4999 -4.4667 35 1 3.1664 3.4840 -3.8051 36 1 3.9611 2.2688 -4.8346 37 1 2.2081 2.5825 -6.5595 38 1 1.4129 3.7978 -5.5306 39 1 1.5160 5.3772 -8.8558 40 1 1.0688 -2.5557 0.7436 41 1 1.8971 -3.7190 2.7495 42 1 3.3141 -2.5229 4.3696 43 1 3.9097 -0.1658 3.9795 44 1 3.0884 0.9953 1.9693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273140573.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:07 Heat of formation + Delta-G solvation = -15.932723 kcal Electronic energy + Delta-G solvation = -22490.082192 eV Core-core repulsion = 19213.953998 eV Total energy + Delta-G solvation = -3276.128193 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 8.44 seconds Orbital eigenvalues (eV) -40.16837 -39.33073 -36.41022 -34.77712 -33.94767 -32.69882 -31.07488 -29.85167 -29.18874 -27.85656 -25.77875 -24.37890 -23.40051 -22.60522 -21.05751 -20.38359 -19.44291 -17.68151 -17.16452 -16.45605 -16.04362 -15.76161 -15.28495 -15.01715 -14.51643 -14.24711 -14.08215 -13.83874 -13.51420 -13.30660 -13.19919 -13.06782 -12.81570 -12.62466 -12.32304 -12.24601 -11.97488 -11.49357 -11.33938 -11.15386 -11.00303 -10.93434 -10.74880 -10.63461 -10.29097 -9.86232 -9.52361 -9.25846 -9.08202 -8.96186 -8.63701 -8.43393 -8.15858 -6.07831 -4.10365 1.19106 1.24075 2.94300 3.32506 3.36076 3.39844 3.56360 3.65228 4.29805 4.46448 4.61216 4.62629 4.82620 4.94464 4.94954 4.98278 5.06817 5.24795 5.29173 5.31095 5.33794 5.40822 5.49178 5.59005 5.69883 5.80763 5.86165 5.88552 6.03430 6.09462 6.28791 6.30278 6.34787 6.42233 6.52707 6.64922 6.79515 6.84653 7.03321 7.18589 7.57207 7.64880 7.91284 8.26695 8.40346 8.94042 9.01653 9.54201 11.03818 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.032503 B = 0.002605 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.258627 B =10746.360068 C =11275.491220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.072 4.072 3 H 0.084 0.916 4 C 0.146 3.854 5 N -0.637 5.637 6 C 0.078 3.922 7 C 0.699 3.301 8 O -0.594 6.594 9 N -0.738 5.738 10 C 0.139 3.861 11 C 0.014 3.986 12 C -0.521 4.521 13 H 0.059 0.941 14 C 0.059 3.941 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.068 4.068 21 C -0.117 4.117 22 C -0.121 4.121 23 C -0.128 4.128 24 C -0.119 4.119 25 C -0.112 4.112 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.393 0.607 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.021 0.979 38 H 0.021 0.979 39 H 0.262 0.738 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.026 -15.819 19.188 25.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.092 4.092 3 H 0.103 0.897 4 C 0.022 3.978 5 N -0.375 5.375 6 C -0.065 4.065 7 C 0.401 3.599 8 O -0.473 6.473 9 N -0.393 5.393 10 C 0.016 3.984 11 C -0.024 4.024 12 C -0.559 4.559 13 H 0.077 0.923 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.068 4.068 21 C -0.135 4.135 22 C -0.139 4.139 23 C -0.146 4.146 24 C -0.137 4.137 25 C -0.130 4.130 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.228 0.772 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.072 0.928 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.344 -15.565 19.390 25.241 hybrid contribution 0.053 0.640 -0.633 0.902 sum -4.290 -14.925 18.757 24.351 Atomic orbital electron populations 1.21936 0.94181 1.01753 1.02214 1.20624 0.96221 1.00396 0.91913 0.89732 1.21290 1.01394 0.92976 0.82098 1.47006 1.20445 1.39818 1.30258 1.21811 0.85506 1.01505 0.97725 1.16014 0.83454 0.79393 0.81081 1.90883 1.23860 1.70359 1.62199 1.45687 1.24443 1.40214 1.28963 1.21589 0.92355 0.87564 0.96861 1.19311 0.96629 0.95704 0.90734 1.21018 1.04616 1.18854 1.11441 0.92279 1.24995 0.95307 0.97350 0.96652 1.69948 1.21327 1.41461 1.20653 0.86568 0.80829 0.81769 0.78340 1.20109 1.21269 1.20107 1.19821 0.97109 0.94152 0.95757 1.20991 1.00421 0.94321 0.97743 1.21111 0.98275 0.99735 0.94751 1.21125 0.99063 0.94925 0.99514 1.21156 0.99927 0.94971 0.97609 1.21167 0.97479 1.00207 0.94172 0.91691 0.92674 0.92771 0.89769 0.90877 0.92583 0.91261 0.91143 0.77228 0.92816 0.92833 0.96039 0.96021 0.92825 0.86176 0.86273 0.86373 0.86183 0.85973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.57 37.16 0.32 -1.00 16 2 C -0.07 -0.79 2.77 -91.77 -0.25 -1.05 16 3 H 0.08 1.15 7.88 -51.93 -0.41 0.74 16 4 C 0.15 1.72 4.66 -4.04 -0.02 1.70 16 5 N -0.64 -8.48 2.70 -187.35 -0.51 -8.98 16 6 C 0.08 0.75 9.25 59.85 0.55 1.31 16 7 C 0.70 12.62 8.28 -86.92 -0.72 11.90 16 8 O -0.59 -12.99 15.92 5.29 0.08 -12.90 16 9 N -0.74 -13.48 5.42 -65.22 -0.35 -13.83 16 10 C 0.14 3.05 5.61 -4.04 -0.02 3.03 16 11 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 12 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 13 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 15 N -0.90 -26.20 13.29 55.43 0.74 -25.47 16 16 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C -0.07 -0.72 4.78 -104.62 -0.50 -1.22 16 21 C -0.12 -1.06 8.76 -39.59 -0.35 -1.41 16 22 C -0.12 -1.03 10.05 -39.59 -0.40 -1.42 16 23 C -0.13 -1.11 10.05 -39.58 -0.40 -1.50 16 24 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 25 C -0.11 -1.21 9.67 -39.58 -0.38 -1.59 16 26 H 0.06 0.61 5.43 -51.93 -0.28 0.33 16 27 H 0.05 0.42 7.37 -51.93 -0.38 0.04 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 1.19 7.42 -51.93 -0.39 0.81 16 30 H 0.07 0.66 7.34 -51.93 -0.38 0.28 16 31 H 0.06 0.49 6.38 -51.92 -0.33 0.16 16 32 H 0.07 0.68 6.36 -51.93 -0.33 0.35 16 33 H 0.07 0.51 7.89 -51.93 -0.41 0.10 16 34 H 0.39 6.24 6.20 -40.82 -0.25 5.98 16 35 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 40 H 0.12 0.89 7.16 -52.48 -0.38 0.51 16 41 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 43 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.12 1.29 7.95 -52.48 -0.42 0.88 16 LS Contribution 358.67 15.07 5.41 5.41 Total: -1.00 -32.69 358.67 -9.65 -42.34 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.88 Total: 2.84 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -3.12 Total: -5.89 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.12 Total: -48.28 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.08 Total: -12.90 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.69 -9.65 -42.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273140573.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.410 kcal (2) G-P(sol) polarization free energy of solvation -32.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.44 seconds