Wall clock time and date at job start Tue Mar 31 2020 08:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 N 1.46500 * 109.47170 * 65.00312 * 4 2 1 6 6 C 1.46500 * 120.00201 * 270.00067 * 5 4 2 7 7 C 1.34777 * 120.00042 * 89.99444 * 5 4 2 8 8 O 1.21589 * 119.99933 * 0.02562 * 7 5 4 9 9 N 1.34774 * 119.99919 * 180.02562 * 7 5 4 10 10 C 1.46506 * 119.99961 * 180.02562 * 9 7 5 11 11 C 1.53003 * 109.46979 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.46916 * 180.02562 * 11 10 9 13 13 H 1.08005 * 120.00317 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00120 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99883 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00272 * 179.97438 * 14 12 11 17 17 H 1.48510 * 109.46902 * 59.99509 * 16 14 12 18 18 H 1.48497 * 109.47348 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46878 * 300.00228 * 16 14 12 20 20 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 21 21 C 1.38238 * 120.00152 * 59.72667 * 20 2 1 22 22 C 1.38228 * 119.99981 * 179.78971 * 21 20 2 23 23 C 1.38233 * 120.00446 * 0.43942 * 22 21 20 24 24 C 1.38237 * 119.99774 * 359.81149 * 23 22 21 25 25 C 1.38236 * 120.00068 * 239.99787 * 20 2 1 26 26 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 29 29 H 1.09000 * 109.46875 * 184.99989 * 4 2 1 30 30 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 31 31 H 1.09008 * 109.47240 * 89.99557 * 6 5 4 32 32 H 1.08993 * 109.47538 * 210.00004 * 6 5 4 33 33 H 1.09005 * 109.47027 * 329.99946 * 6 5 4 34 34 H 0.96998 * 120.00536 * 0.02562 * 9 7 5 35 35 H 1.08993 * 109.46970 * 300.00020 * 10 9 7 36 36 H 1.09000 * 109.47059 * 60.00096 * 10 9 7 37 37 H 1.08993 * 109.47328 * 299.99853 * 11 10 9 38 38 H 1.09000 * 109.47104 * 60.00175 * 11 10 9 39 39 H 0.97000 * 120.00018 * 180.02562 * 15 14 12 40 40 H 1.08004 * 119.99897 * 359.97438 * 21 20 2 41 41 H 1.07998 * 120.00272 * 180.27611 * 22 21 20 42 42 H 1.08003 * 120.00641 * 179.83923 * 23 22 21 43 43 H 1.07999 * 120.00221 * 180.02562 * 24 23 22 44 44 H 1.08004 * 119.99815 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6526 0.0353 -2.4424 6 6 0.3747 -0.2423 -3.1028 7 6 2.4716 0.9868 -2.9324 8 8 3.5324 1.2170 -2.3845 9 7 2.1149 1.6832 -4.0298 10 6 3.0055 2.7172 -4.5628 11 6 2.3686 3.3495 -5.8020 12 6 3.2850 4.4127 -6.3506 13 1 4.2276 4.6166 -5.8644 14 6 2.9201 5.1250 -7.4733 15 7 1.7726 4.8763 -8.0657 16 14 4.0557 6.4433 -8.1530 17 1 5.3577 5.8324 -8.5231 18 1 3.4377 7.0570 -9.3557 19 1 4.2748 7.4881 -7.1207 20 6 2.0323 -0.7104 1.2305 21 6 1.6937 -2.0322 1.4521 22 6 2.1580 -2.6851 2.5786 23 6 2.9535 -2.0136 3.4881 24 6 3.2879 -0.6903 3.2692 25 6 2.8271 -0.0386 2.1404 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.1264 -0.7995 -1.2055 30 1 1.6054 -1.7198 -1.2951 31 1 -0.4017 0.3903 -2.6725 32 1 0.4638 -0.0339 -4.1689 33 1 0.1111 -1.2901 -2.9583 34 1 1.2685 1.4999 -4.4667 35 1 3.1664 3.4840 -3.8051 36 1 3.9611 2.2688 -4.8346 37 1 2.2081 2.5825 -6.5595 38 1 1.4129 3.7978 -5.5306 39 1 1.5160 5.3772 -8.8558 40 1 1.0688 -2.5557 0.7436 41 1 1.8971 -3.7190 2.7495 42 1 3.3141 -2.5229 4.3696 43 1 3.9097 -0.1658 3.9795 44 1 3.0884 0.9953 1.9693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273140573.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:00 Heat of formation + Delta-G solvation = -34.625974 kcal Electronic energy + Delta-G solvation = -22490.892792 eV Core-core repulsion = 19213.953998 eV Total energy + Delta-G solvation = -3276.938793 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 11.00 seconds Orbital eigenvalues (eV) -41.36831 -40.23438 -37.54251 -36.49898 -35.16341 -34.47795 -31.77028 -31.49483 -30.16542 -28.75406 -27.23655 -25.89200 -24.29321 -23.38376 -22.85493 -21.42793 -20.69274 -18.97552 -18.47126 -17.93160 -17.26339 -16.91146 -16.50401 -16.25426 -15.95864 -15.46574 -15.29043 -15.07803 -14.58209 -14.42885 -14.27550 -14.10643 -13.90078 -13.80092 -13.49848 -13.23601 -13.03863 -12.93368 -12.70608 -12.53396 -12.31530 -12.21779 -12.13367 -11.74423 -11.65396 -11.55445 -11.47578 -11.13431 -10.59881 -10.15694 -9.79034 -9.70697 -9.36015 -8.23896 -6.34201 0.47470 0.53201 1.41693 1.44257 1.52009 1.71232 2.14714 2.40976 2.91264 3.08316 3.10663 3.77769 3.83746 4.08657 4.16724 4.20601 4.28226 4.33673 4.42467 4.45478 4.50437 4.55805 4.64748 4.66260 4.75756 4.83115 4.85204 4.87918 5.01480 5.14269 5.15224 5.22177 5.30292 5.36230 5.50787 5.56416 5.58636 5.64944 5.65835 5.76947 5.79218 5.94494 6.16131 6.17161 6.78213 7.00730 7.34849 7.57749 8.87814 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.032503 B = 0.002605 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.258627 B =10746.360068 C =11275.491220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.064 4.064 3 H 0.046 0.954 4 C 0.146 3.854 5 N -0.626 5.626 6 C 0.069 3.931 7 C 0.694 3.306 8 O -0.639 6.639 9 N -0.734 5.734 10 C 0.160 3.840 11 C 0.026 3.974 12 C -0.548 4.548 13 H 0.058 0.942 14 C 0.008 3.992 15 N -0.925 5.925 16 Si 0.965 3.035 17 H -0.269 1.269 18 H -0.279 1.279 19 H -0.269 1.269 20 C -0.082 4.082 21 C -0.119 4.119 22 C -0.122 4.122 23 C -0.132 4.132 24 C -0.129 4.129 25 C -0.139 4.139 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.112 0.888 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.406 0.594 35 H 0.040 0.960 36 H 0.041 0.959 37 H 0.009 0.991 38 H 0.008 0.992 39 H 0.266 0.734 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.141 0.859 43 H 0.132 0.868 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.998 -17.628 19.744 27.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.023 3.977 5 N -0.363 5.363 6 C -0.073 4.073 7 C 0.396 3.604 8 O -0.521 6.521 9 N -0.390 5.390 10 C 0.036 3.964 11 C -0.011 4.011 12 C -0.586 4.586 13 H 0.076 0.924 14 C -0.191 4.191 15 N -0.565 5.565 16 Si 0.789 3.211 17 H -0.194 1.194 18 H -0.205 1.205 19 H -0.194 1.194 20 C -0.083 4.083 21 C -0.137 4.137 22 C -0.140 4.140 23 C -0.150 4.150 24 C -0.147 4.147 25 C -0.158 4.158 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.130 0.870 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.125 0.875 34 H 0.243 0.757 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.075 0.925 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.159 0.841 43 H 0.150 0.850 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.367 -17.414 19.960 27.027 hybrid contribution 0.323 1.130 -0.737 1.387 sum -5.044 -16.284 19.223 25.693 Atomic orbital electron populations 1.21897 0.92313 1.03271 1.01947 1.20467 0.97622 0.98230 0.92055 0.93539 1.21439 1.00037 0.94549 0.81653 1.47039 1.20865 1.38010 1.30344 1.22131 0.83669 1.04133 0.97340 1.16191 0.83525 0.80050 0.80674 1.90850 1.26104 1.71834 1.63347 1.45377 1.24491 1.39702 1.29421 1.21060 0.92167 0.87941 0.95255 1.19103 0.95741 0.94864 0.91422 1.21426 1.05150 1.19949 1.12103 0.92422 1.25863 0.96852 0.99533 0.96855 1.70048 1.22822 1.42519 1.21089 0.85503 0.78868 0.78899 0.77805 1.19376 1.20455 1.19404 1.19845 0.97774 0.95130 0.95503 1.21239 1.00439 0.93486 0.98496 1.21492 0.97412 1.00958 0.94121 1.21471 0.98669 0.94495 1.00382 1.21371 1.00121 0.95780 0.97381 1.21259 0.98867 1.00091 0.95549 0.91922 0.90144 0.93108 0.92741 0.86983 0.91234 0.91450 0.87545 0.75713 0.94116 0.94040 0.97280 0.97327 0.92501 0.83893 0.83562 0.84071 0.85007 0.87425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.57 71.98 0.62 -1.65 16 2 C -0.06 -1.40 2.77 -11.54 -0.03 -1.43 16 3 H 0.05 1.36 7.88 -2.39 -0.02 1.34 16 4 C 0.15 3.29 4.66 86.38 0.40 3.70 16 5 N -0.63 -16.09 2.70 -864.92 -2.33 -18.43 16 6 C 0.07 1.15 9.25 127.77 1.18 2.34 16 7 C 0.69 25.52 8.28 179.06 1.48 27.00 16 8 O -0.64 -29.17 15.92 -4.00 -0.06 -29.23 16 9 N -0.73 -27.21 5.42 -478.53 -2.59 -29.80 16 10 C 0.16 7.25 5.61 86.38 0.48 7.73 16 11 C 0.03 1.35 5.09 29.85 0.15 1.50 16 12 C -0.55 -31.11 9.11 25.60 0.23 -30.88 16 13 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 14 C 0.01 0.44 5.46 84.65 0.46 0.91 16 15 N -0.93 -54.43 13.29 21.45 0.28 -54.14 16 16 Si 0.96 44.01 29.54 68.60 2.03 46.03 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 C -0.08 -1.70 4.78 -19.87 -0.09 -1.79 16 21 C -0.12 -1.88 8.76 22.27 0.20 -1.68 16 22 C -0.12 -1.73 10.05 22.27 0.22 -1.51 16 23 C -0.13 -2.03 10.05 22.27 0.22 -1.80 16 24 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 25 C -0.14 -3.15 9.67 22.27 0.22 -2.93 16 26 H 0.06 1.06 5.43 -2.39 -0.01 1.04 16 27 H 0.08 0.93 7.37 -2.39 -0.02 0.91 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 1.57 7.42 -2.39 -0.02 1.56 16 30 H 0.11 1.65 7.34 -2.39 -0.02 1.64 16 31 H 0.07 1.03 6.38 -2.38 -0.02 1.01 16 32 H 0.07 1.18 6.36 -2.39 -0.02 1.17 16 33 H 0.11 1.07 7.89 -2.38 -0.02 1.05 16 34 H 0.41 12.82 6.20 -92.71 -0.58 12.25 16 35 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.01 0.47 8.14 -2.39 -0.02 0.46 16 38 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.27 14.72 8.31 -92.71 -0.77 13.94 16 40 H 0.14 1.52 7.16 -2.91 -0.02 1.50 16 41 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 42 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 43 H 0.13 1.99 8.06 -2.91 -0.02 1.96 16 44 H 0.11 2.59 7.95 -2.91 -0.02 2.57 16 Total: -1.00 -72.56 358.67 3.70 -68.86 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.41 Total: 19.38 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 5.97 Total: -2.67 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -4.64 Total: -102.37 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.06 Total: -29.23 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -72.56 3.70 -68.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273140573.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.235 kcal (2) G-P(sol) polarization free energy of solvation -72.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.00 seconds