Wall clock time and date at job start Tue Mar 31 2020 07:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47281 * 2 1 4 4 C 1.53001 * 109.47194 * 239.99145 * 2 1 3 5 5 C 1.53000 * 109.46886 * 175.00077 * 4 2 1 6 6 C 1.50703 * 109.46912 * 180.02562 * 5 4 2 7 7 C 1.38234 * 119.99770 * 269.72838 * 6 5 4 8 8 C 1.38239 * 119.99901 * 179.76875 * 7 6 5 9 9 C 1.38240 * 119.99645 * 0.50240 * 8 7 6 10 10 C 1.38227 * 120.00205 * 359.74956 * 9 8 7 11 11 C 1.38232 * 119.99860 * 90.00280 * 6 5 4 12 12 N 1.46502 * 109.46861 * 119.99657 * 2 1 3 13 13 C 1.34774 * 120.00144 * 275.00142 * 12 2 1 14 14 O 1.21590 * 120.00141 * 359.97438 * 13 12 2 15 15 N 1.34776 * 120.00371 * 180.02562 * 13 12 2 16 16 C 1.46500 * 120.00508 * 179.97438 * 15 13 12 17 17 C 1.52992 * 109.47517 * 179.97438 * 16 15 13 18 18 C 1.50699 * 109.47311 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00263 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00345 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99688 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00186 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46766 * 90.00626 * 22 20 18 24 24 H 1.48498 * 109.47107 * 210.00284 * 22 20 18 25 25 H 1.48496 * 109.47223 * 330.00555 * 22 20 18 26 26 H 1.09002 * 109.46818 * 60.00551 * 1 2 3 27 27 H 1.09004 * 109.47242 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47237 * 300.00371 * 1 2 3 29 29 H 1.09001 * 109.46652 * 55.00422 * 4 2 1 30 30 H 1.08992 * 109.47514 * 295.00511 * 4 2 1 31 31 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 32 32 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 33 33 H 1.08001 * 120.00330 * 359.97438 * 7 6 5 34 34 H 1.08001 * 119.99843 * 180.23314 * 8 7 6 35 35 H 1.08002 * 119.99612 * 179.72381 * 9 8 7 36 36 H 1.07996 * 120.00251 * 179.97438 * 10 9 8 37 37 H 1.07998 * 120.00407 * 0.02562 * 11 6 5 38 38 H 0.97001 * 120.00062 * 94.99942 * 12 2 1 39 39 H 0.97001 * 119.99835 * 359.97438 * 15 13 12 40 40 H 1.09007 * 109.46978 * 300.00270 * 16 15 13 41 41 H 1.09009 * 109.46743 * 59.99573 * 16 15 13 42 42 H 1.08998 * 109.47286 * 300.00058 * 17 16 15 43 43 H 1.08999 * 109.47405 * 60.00177 * 17 16 15 44 44 H 0.97006 * 119.99897 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5648 -0.6135 -1.3135 6 6 4.0672 -1.3235 -2.5442 7 6 4.4012 -2.6634 -2.4811 8 6 4.8574 -3.3159 -3.6112 9 6 4.9895 -2.6259 -4.8018 10 6 4.6604 -1.2848 -4.8636 11 6 4.1992 -0.6335 -3.7347 12 7 2.0183 -0.6906 1.1962 13 6 2.1469 -0.0182 2.3572 14 8 1.8582 1.1617 2.4116 15 7 2.5966 -0.6533 3.4576 16 6 2.7370 0.0777 4.7194 17 6 3.2612 -0.8685 5.8014 18 6 3.4050 -0.1166 7.0995 19 1 3.1478 0.9312 7.1481 20 6 3.8639 -0.7666 8.2255 21 7 4.1767 -2.0427 8.1665 22 14 4.0429 0.1655 9.8344 23 1 2.7750 0.0753 10.6023 24 1 5.1469 -0.4284 10.6303 25 1 4.3488 1.5904 9.5495 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6054 -0.2619 -2.1369 30 1 1.7516 -1.7716 -1.2054 31 1 3.8532 0.4368 -1.3572 32 1 3.9995 -1.0729 -0.4258 33 1 4.3026 -3.2013 -1.5498 34 1 5.1149 -4.3637 -3.5628 35 1 5.3501 -3.1347 -5.6835 36 1 4.7639 -0.7457 -5.7936 37 1 3.9428 0.4145 -3.7828 38 1 2.2489 -1.6317 1.1528 39 1 2.8273 -1.5945 3.4141 40 1 3.4381 0.9016 4.5859 41 1 1.7664 0.4718 5.0209 42 1 2.5598 -1.6921 5.9348 43 1 4.2317 -1.2629 5.5001 44 1 4.4992 -2.5002 8.9588 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273421549.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:06 Heat of formation + Delta-G solvation = -36.168589 kcal Electronic energy + Delta-G solvation = -21886.679651 eV Core-core repulsion = 18609.673965 eV Total energy + Delta-G solvation = -3277.005686 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.87391 -39.38848 -36.68449 -34.69050 -33.43984 -32.81584 -31.14870 -31.09775 -29.14610 -28.59883 -24.83338 -24.28488 -22.83068 -21.72204 -21.09464 -20.72727 -20.41459 -18.01835 -17.03353 -16.47355 -16.10586 -15.51533 -15.36275 -15.04295 -14.55798 -14.28340 -14.24407 -13.83539 -13.69132 -13.39392 -13.29518 -13.14914 -12.92763 -12.47240 -12.28951 -12.07487 -11.72903 -11.52974 -11.26269 -11.16447 -11.02263 -11.00001 -10.78275 -10.61451 -10.29057 -9.87703 -9.52656 -9.23832 -9.18175 -9.04767 -8.85867 -8.46416 -8.21017 -6.07700 -4.10111 1.09802 1.13966 3.10671 3.30811 3.36904 3.41714 3.51860 3.65182 4.37038 4.41382 4.56892 4.70246 4.74011 4.83681 4.86566 4.91448 5.00693 5.23576 5.27774 5.29454 5.37897 5.46289 5.49818 5.61660 5.69817 5.76802 5.81706 5.94434 6.02881 6.20823 6.22341 6.25483 6.34303 6.40402 6.42943 6.72936 6.75397 6.81293 7.04880 7.30076 7.59658 7.65729 7.91834 8.28491 8.49336 8.95198 9.06138 9.54527 11.03996 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.021609 B = 0.002456 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.439572 B =11398.835276 C =12254.532518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.161 3.839 3 H 0.087 0.913 4 C -0.118 4.118 5 C -0.083 4.083 6 C -0.077 4.077 7 C -0.117 4.117 8 C -0.119 4.119 9 C -0.129 4.129 10 C -0.120 4.120 11 C -0.119 4.119 12 N -0.748 5.748 13 C 0.698 3.302 14 O -0.599 6.599 15 N -0.740 5.740 16 C 0.141 3.859 17 C 0.013 3.987 18 C -0.520 4.520 19 H 0.059 0.941 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.272 1.272 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.392 0.608 39 H 0.392 0.608 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.660 -2.741 -26.418 26.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.055 3.945 3 H 0.105 0.895 4 C -0.156 4.156 5 C -0.121 4.121 6 C -0.077 4.077 7 C -0.135 4.135 8 C -0.137 4.137 9 C -0.147 4.147 10 C -0.138 4.138 11 C -0.137 4.137 12 N -0.405 5.405 13 C 0.398 3.602 14 O -0.478 6.478 15 N -0.393 5.393 16 C 0.018 3.982 17 C -0.025 4.025 18 C -0.559 4.559 19 H 0.078 0.922 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.225 0.775 39 H 0.225 0.775 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.853 -1.758 -26.221 26.346 hybrid contribution 0.376 -0.601 0.850 1.107 sum -1.477 -2.359 -25.371 25.524 Atomic orbital electron populations 1.22202 0.95687 1.01902 1.02467 1.20746 0.93579 0.97318 0.82822 0.89458 1.21879 0.94756 1.01405 0.97575 1.20652 0.95506 1.00740 0.95155 1.19974 0.98297 0.94133 0.95331 1.21110 0.99517 0.94265 0.98649 1.21168 0.99559 0.99905 0.93027 1.21140 1.00842 0.94758 0.97955 1.21146 0.99374 0.94870 0.98376 1.21089 1.00095 0.99955 0.92545 1.45254 1.72701 1.13397 1.09136 1.16085 0.78507 0.85200 0.80377 1.90880 1.57635 1.14539 1.84718 1.45542 1.69892 1.13883 1.10011 1.21569 1.00314 0.95558 0.80791 1.19319 0.96546 0.94625 0.91967 1.21060 1.44174 0.96651 0.93976 0.92228 1.24999 0.95229 0.94935 0.99192 1.69960 1.44700 1.09188 1.29544 0.86510 0.77748 0.80080 0.83207 1.20576 1.21195 1.19716 0.92034 0.92715 0.91766 0.90356 0.91267 0.90720 0.90499 0.85995 0.86158 0.86335 0.86243 0.86094 0.77466 0.77488 0.92847 0.92872 0.96018 0.95998 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.48 37.16 0.35 -1.36 16 2 C 0.16 1.73 2.58 -67.93 -0.17 1.55 16 3 H 0.09 1.12 7.58 -51.93 -0.39 0.72 16 4 C -0.12 -0.94 4.74 -26.73 -0.13 -1.07 16 5 C -0.08 -0.72 5.23 -27.88 -0.15 -0.86 16 6 C -0.08 -0.68 5.13 -104.62 -0.54 -1.22 16 7 C -0.12 -1.01 9.70 -39.58 -0.38 -1.39 16 8 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 9 C -0.13 -0.99 10.05 -39.58 -0.40 -1.39 16 10 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 11 C -0.12 -0.99 9.70 -39.58 -0.38 -1.38 16 12 N -0.75 -9.19 4.53 -58.68 -0.27 -9.45 16 13 C 0.70 12.12 8.53 -86.92 -0.74 11.38 16 14 O -0.60 -12.82 16.01 5.29 0.08 -12.73 16 15 N -0.74 -13.12 5.56 -65.22 -0.36 -13.48 16 16 C 0.14 3.05 5.61 -4.05 -0.02 3.03 16 17 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 18 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 19 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 22 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 32 H 0.08 0.71 7.69 -51.93 -0.40 0.31 16 33 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 34 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 37 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.39 3.79 8.62 -40.82 -0.35 3.44 16 39 H 0.39 5.97 8.49 -40.82 -0.35 5.62 16 40 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.05 1.21 8.14 -51.92 -0.42 0.78 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 370.82 15.07 5.59 5.59 Total: -1.00 -32.77 370.82 -10.52 -43.29 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -7.37 Total: 4.33 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -3.91 Total: -8.51 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: 0.11 Total: -48.46 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.08 Total: -12.73 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.77 -10.52 -43.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273421549.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.125 kcal (2) G-P(sol) polarization free energy of solvation -32.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds