Wall clock time and date at job start Tue Mar 31 2020 07:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47281 * 2 1 4 4 C 1.53001 * 109.47194 * 239.99145 * 2 1 3 5 5 C 1.53000 * 109.46886 * 175.00077 * 4 2 1 6 6 C 1.50703 * 109.46912 * 180.02562 * 5 4 2 7 7 C 1.38234 * 119.99770 * 269.72838 * 6 5 4 8 8 C 1.38239 * 119.99901 * 179.76875 * 7 6 5 9 9 C 1.38240 * 119.99645 * 0.50240 * 8 7 6 10 10 C 1.38227 * 120.00205 * 359.74956 * 9 8 7 11 11 C 1.38232 * 119.99860 * 90.00280 * 6 5 4 12 12 N 1.46502 * 109.46861 * 119.99657 * 2 1 3 13 13 C 1.34774 * 120.00144 * 275.00142 * 12 2 1 14 14 O 1.21590 * 120.00141 * 359.97438 * 13 12 2 15 15 N 1.34776 * 120.00371 * 180.02562 * 13 12 2 16 16 C 1.46500 * 120.00508 * 179.97438 * 15 13 12 17 17 C 1.52992 * 109.47517 * 179.97438 * 16 15 13 18 18 C 1.50699 * 109.47311 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00263 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00345 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99688 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00186 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46766 * 90.00626 * 22 20 18 24 24 H 1.48498 * 109.47107 * 210.00284 * 22 20 18 25 25 H 1.48496 * 109.47223 * 330.00555 * 22 20 18 26 26 H 1.09002 * 109.46818 * 60.00551 * 1 2 3 27 27 H 1.09004 * 109.47242 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47237 * 300.00371 * 1 2 3 29 29 H 1.09001 * 109.46652 * 55.00422 * 4 2 1 30 30 H 1.08992 * 109.47514 * 295.00511 * 4 2 1 31 31 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 32 32 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 33 33 H 1.08001 * 120.00330 * 359.97438 * 7 6 5 34 34 H 1.08001 * 119.99843 * 180.23314 * 8 7 6 35 35 H 1.08002 * 119.99612 * 179.72381 * 9 8 7 36 36 H 1.07996 * 120.00251 * 179.97438 * 10 9 8 37 37 H 1.07998 * 120.00407 * 0.02562 * 11 6 5 38 38 H 0.97001 * 120.00062 * 94.99942 * 12 2 1 39 39 H 0.97001 * 119.99835 * 359.97438 * 15 13 12 40 40 H 1.09007 * 109.46978 * 300.00270 * 16 15 13 41 41 H 1.09009 * 109.46743 * 59.99573 * 16 15 13 42 42 H 1.08998 * 109.47286 * 300.00058 * 17 16 15 43 43 H 1.08999 * 109.47405 * 60.00177 * 17 16 15 44 44 H 0.97006 * 119.99897 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5648 -0.6135 -1.3135 6 6 4.0672 -1.3235 -2.5442 7 6 4.4012 -2.6634 -2.4811 8 6 4.8574 -3.3159 -3.6112 9 6 4.9895 -2.6259 -4.8018 10 6 4.6604 -1.2848 -4.8636 11 6 4.1992 -0.6335 -3.7347 12 7 2.0183 -0.6906 1.1962 13 6 2.1469 -0.0182 2.3572 14 8 1.8582 1.1617 2.4116 15 7 2.5966 -0.6533 3.4576 16 6 2.7370 0.0777 4.7194 17 6 3.2612 -0.8685 5.8014 18 6 3.4050 -0.1166 7.0995 19 1 3.1478 0.9312 7.1481 20 6 3.8639 -0.7666 8.2255 21 7 4.1767 -2.0427 8.1665 22 14 4.0429 0.1655 9.8344 23 1 2.7750 0.0753 10.6023 24 1 5.1469 -0.4284 10.6303 25 1 4.3488 1.5904 9.5495 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6054 -0.2619 -2.1369 30 1 1.7516 -1.7716 -1.2054 31 1 3.8532 0.4368 -1.3572 32 1 3.9995 -1.0729 -0.4258 33 1 4.3026 -3.2013 -1.5498 34 1 5.1149 -4.3637 -3.5628 35 1 5.3501 -3.1347 -5.6835 36 1 4.7639 -0.7457 -5.7936 37 1 3.9428 0.4145 -3.7828 38 1 2.2489 -1.6317 1.1528 39 1 2.8273 -1.5945 3.4141 40 1 3.4381 0.9016 4.5859 41 1 1.7664 0.4718 5.0209 42 1 2.5598 -1.6921 5.9348 43 1 4.2317 -1.2629 5.5001 44 1 4.4992 -2.5002 8.9588 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273421549.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:03 Heat of formation + Delta-G solvation = -55.559753 kcal Electronic energy + Delta-G solvation = -21887.520515 eV Core-core repulsion = 18609.673965 eV Total energy + Delta-G solvation = -3277.846550 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 8.43 seconds Orbital eigenvalues (eV) -41.09593 -40.12416 -37.75115 -36.39201 -34.82681 -34.25326 -32.35150 -31.71587 -30.77789 -29.35096 -26.69374 -25.12957 -23.41358 -23.19590 -22.31424 -21.75553 -21.54135 -19.42714 -18.42678 -17.62655 -17.34350 -16.58391 -16.50912 -16.15991 -16.02133 -15.58756 -15.36201 -15.07541 -14.68955 -14.33747 -14.28817 -14.26378 -13.95913 -13.64393 -13.39545 -13.19971 -12.92847 -12.89026 -12.51602 -12.45406 -12.24489 -12.16606 -11.96561 -11.67442 -11.64416 -11.52576 -11.47319 -11.13581 -10.59773 -10.29278 -9.77361 -9.71163 -9.50782 -8.23542 -6.33614 0.49739 0.54734 1.42166 1.42766 1.54224 1.83331 2.23330 2.42010 2.92006 3.11245 3.43227 3.65984 3.96287 4.08918 4.17499 4.22116 4.28510 4.36297 4.49074 4.50032 4.53653 4.66316 4.69877 4.72982 4.79467 4.86256 4.88922 4.97754 5.10323 5.19102 5.24231 5.29890 5.33066 5.38247 5.54157 5.60754 5.63044 5.67212 5.67935 5.79149 5.80645 6.11256 6.18134 6.18579 6.79629 7.19457 7.35716 7.67077 8.88390 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.021609 B = 0.002456 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.439572 B =11398.835276 C =12254.532518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.159 3.841 3 H 0.066 0.934 4 C -0.103 4.103 5 C -0.079 4.079 6 C -0.088 4.088 7 C -0.131 4.131 8 C -0.128 4.128 9 C -0.136 4.136 10 C -0.127 4.127 11 C -0.131 4.131 12 N -0.727 5.727 13 C 0.698 3.302 14 O -0.640 6.640 15 N -0.735 5.735 16 C 0.161 3.839 17 C 0.025 3.975 18 C -0.546 4.546 19 H 0.058 0.942 20 C 0.006 3.994 21 N -0.927 5.927 22 Si 0.965 3.035 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.267 1.267 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.031 0.969 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.129 0.871 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.130 0.870 38 H 0.408 0.592 39 H 0.406 0.594 40 H 0.042 0.958 41 H 0.041 0.959 42 H 0.008 0.992 43 H 0.009 0.991 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.753 -3.209 -27.613 27.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.054 3.946 3 H 0.084 0.916 4 C -0.141 4.141 5 C -0.117 4.117 6 C -0.088 4.088 7 C -0.149 4.149 8 C -0.146 4.146 9 C -0.154 4.154 10 C -0.145 4.145 11 C -0.149 4.149 12 N -0.384 5.384 13 C 0.397 3.603 14 O -0.523 6.523 15 N -0.390 5.390 16 C 0.037 3.963 17 C -0.013 4.013 18 C -0.584 4.584 19 H 0.077 0.923 20 C -0.192 4.192 21 N -0.566 5.566 22 Si 0.789 3.211 23 H -0.197 1.197 24 H -0.205 1.205 25 H -0.191 1.191 26 H 0.102 0.898 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.147 0.853 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.148 0.852 38 H 0.245 0.755 39 H 0.241 0.759 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.949 -2.274 -27.468 27.630 hybrid contribution 0.414 -0.487 1.123 1.292 sum -1.535 -2.762 -26.345 26.533 Atomic orbital electron populations 1.22159 0.95047 1.02632 1.01964 1.20897 0.94032 0.96559 0.83069 0.91614 1.21774 0.94229 1.01838 0.96280 1.20585 0.95875 1.00223 0.94997 1.20016 0.98999 0.94388 0.95419 1.21302 0.99867 0.94414 0.99315 1.21438 0.99361 1.00808 0.93029 1.21451 1.00442 0.94938 0.98593 1.21433 0.98931 0.95186 0.98965 1.21300 1.00317 1.00565 0.92703 1.45120 1.71258 1.14042 1.07935 1.16197 0.78120 0.84746 0.81188 1.90853 1.59363 1.16552 1.85489 1.45227 1.70292 1.14370 1.09107 1.21036 0.99018 0.94602 0.81655 1.19118 0.95495 0.94445 0.92247 1.21470 1.44494 0.96983 0.95501 0.92350 1.25872 0.94700 0.95837 1.02813 1.70060 1.45231 1.10587 1.30737 0.85445 0.78033 0.78857 0.78716 1.19749 1.20477 1.19100 0.89850 0.91316 0.94969 0.88858 0.89931 0.91462 0.91286 0.85311 0.84691 0.84503 0.84493 0.85222 0.75546 0.75882 0.94003 0.94035 0.97339 0.97309 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 9.48 71.98 0.68 -2.43 16 2 C 0.16 3.25 2.58 44.99 0.12 3.37 16 3 H 0.07 1.68 7.58 -2.39 -0.02 1.66 16 4 C -0.10 -1.44 4.74 30.59 0.14 -1.29 16 5 C -0.08 -1.28 5.23 29.85 0.16 -1.12 16 6 C -0.09 -1.44 5.13 -19.87 -0.10 -1.54 16 7 C -0.13 -2.07 9.70 22.27 0.22 -1.86 16 8 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 9 C -0.14 -1.85 10.05 22.27 0.22 -1.62 16 10 C -0.13 -1.76 10.05 22.27 0.22 -1.54 16 11 C -0.13 -2.01 9.70 22.27 0.22 -1.79 16 12 N -0.73 -17.19 4.53 -457.82 -2.08 -19.26 16 13 C 0.70 24.20 8.53 179.06 1.53 25.73 16 14 O -0.64 -27.91 16.01 -4.00 -0.06 -27.97 16 15 N -0.74 -26.12 5.56 -478.53 -2.66 -28.78 16 16 C 0.16 7.15 5.61 86.38 0.48 7.63 16 17 C 0.02 1.25 5.09 29.84 0.15 1.40 16 18 C -0.55 -30.85 9.11 25.60 0.23 -30.62 16 19 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 20 C 0.01 0.36 5.46 84.65 0.46 0.83 16 21 N -0.93 -54.56 13.29 21.45 0.28 -54.27 16 22 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 26 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.17 8.08 -2.39 -0.02 1.15 16 32 H 0.07 1.20 7.69 -2.39 -0.02 1.19 16 33 H 0.13 1.74 8.06 -2.91 -0.02 1.72 16 34 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 35 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 36 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 37 H 0.13 1.65 8.06 -2.91 -0.02 1.63 16 38 H 0.41 7.19 8.62 -92.71 -0.80 6.39 16 39 H 0.41 12.16 8.49 -92.71 -0.79 11.37 16 40 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 41 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 42 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.27 14.68 8.31 -92.70 -0.77 13.91 16 Total: -1.00 -70.60 370.82 1.87 -68.74 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -0.61 Total: 22.08 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 4.96 Total: -6.49 kcal Atomic # 7 Polarization: -97.87 SS G_CDS: -4.45 Total: -102.32 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.06 Total: -27.97 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -70.60 1.87 -68.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273421549.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.180 kcal (2) G-P(sol) polarization free energy of solvation -70.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.43 seconds