Wall clock time and date at job start Tue Mar 31 2020 07:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.52995 * 109.47187 * 119.99498 * 2 1 3 5 5 C 1.53000 * 109.47152 * 185.00354 * 4 2 1 6 6 C 1.50703 * 109.47274 * 180.02562 * 5 4 2 7 7 C 1.38243 * 119.99301 * 269.72701 * 6 5 4 8 8 C 1.38233 * 119.99426 * 179.76580 * 7 6 5 9 9 C 1.38237 * 120.00030 * 0.50392 * 8 7 6 10 10 C 1.38236 * 120.00296 * 359.75012 * 9 8 7 11 11 C 1.38230 * 119.99568 * 359.97438 * 10 9 8 12 12 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 13 13 C 1.34777 * 120.00258 * 85.00009 * 12 2 1 14 14 O 1.21579 * 119.99978 * 359.97438 * 13 12 2 15 15 N 1.34784 * 119.99908 * 179.97438 * 13 12 2 16 16 C 1.46494 * 119.99635 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47001 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.47324 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99992 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00038 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00041 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00004 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47317 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47320 * 120.00236 * 22 20 18 25 25 H 1.48507 * 109.47345 * 239.99791 * 22 20 18 26 26 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 28 28 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 29 29 H 1.08994 * 109.47690 * 305.00545 * 4 2 1 30 30 H 1.09003 * 109.47048 * 65.00365 * 4 2 1 31 31 H 1.09004 * 109.46980 * 300.00055 * 5 4 2 32 32 H 1.08995 * 109.47311 * 60.00363 * 5 4 2 33 33 H 1.08000 * 120.00168 * 359.97438 * 7 6 5 34 34 H 1.08001 * 120.00029 * 180.22991 * 8 7 6 35 35 H 1.08004 * 119.99762 * 179.72933 * 9 8 7 36 36 H 1.07998 * 120.00395 * 179.97438 * 10 9 8 37 37 H 1.08003 * 120.00146 * 179.97438 * 11 10 9 38 38 H 0.96999 * 119.99694 * 264.99399 * 12 2 1 39 39 H 0.96995 * 120.00015 * 359.72369 * 15 13 12 40 40 H 1.09005 * 109.47306 * 299.99972 * 16 15 13 41 41 H 1.09002 * 109.47518 * 60.00210 * 16 15 13 42 42 H 1.09005 * 109.46767 * 299.99934 * 17 16 15 43 43 H 1.08996 * 109.47766 * 59.99412 * 17 16 15 44 44 H 0.97001 * 120.00302 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3137 6 6 4.0673 -1.3239 2.5439 7 6 4.2046 -0.6332 3.7335 8 6 4.6608 -1.2863 4.8632 9 6 4.9897 -2.6276 4.8007 10 6 4.8573 -3.3170 3.6098 11 6 4.3957 -2.6652 2.4816 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8575 1.1613 -2.4119 15 7 2.5968 -0.6535 -3.4575 16 6 2.7362 0.0772 -4.7195 17 6 3.2607 -0.8690 -5.8014 18 6 3.4047 -0.1172 -7.0995 19 1 3.1475 0.9305 -7.1482 20 6 3.8649 -0.7671 -8.2251 21 7 4.1787 -2.0428 -8.1658 22 14 4.0427 0.1646 -9.8343 23 1 3.6266 1.5765 -9.6376 24 1 5.4597 0.1227 -10.2767 25 1 3.1827 -0.4649 -10.8685 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.6054 -0.2617 2.1370 30 1 1.7517 -1.7714 1.2056 31 1 3.9995 -1.0726 0.4260 32 1 3.8531 0.4372 1.3574 33 1 3.9522 0.4158 3.7811 34 1 4.7646 -0.7477 5.7935 35 1 5.3503 -3.1368 5.6822 36 1 5.1146 -4.3647 3.5608 37 1 4.2926 -3.2036 1.5510 38 1 2.2491 -1.6317 -1.1525 39 1 2.8317 -1.5935 -3.4128 40 1 1.7653 0.4704 -5.0209 41 1 3.4368 0.9016 -4.5866 42 1 4.2316 -1.2626 -5.5003 43 1 2.5600 -1.6932 -5.9342 44 1 4.5021 -2.5001 -8.9577 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273421552.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:19 Heat of formation + Delta-G solvation = -36.192682 kcal Electronic energy + Delta-G solvation = -21886.956714 eV Core-core repulsion = 18609.949983 eV Total energy + Delta-G solvation = -3277.006731 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.87486 -39.38926 -36.68526 -34.69195 -33.44021 -32.81712 -31.14933 -31.09842 -29.14631 -28.59871 -24.83483 -24.28576 -22.83050 -21.72291 -21.09536 -20.72826 -20.41469 -18.01911 -17.03391 -16.47510 -16.10784 -15.51519 -15.36307 -15.04314 -14.55630 -14.28385 -14.24556 -13.83432 -13.69185 -13.39412 -13.29677 -13.14857 -12.92814 -12.47303 -12.29549 -12.07571 -11.72922 -11.52930 -11.26362 -11.15671 -11.03406 -11.00428 -10.78373 -10.59910 -10.29966 -9.87406 -9.52979 -9.22348 -9.18247 -9.04813 -8.85837 -8.46927 -8.21091 -6.07931 -4.10266 1.09750 1.13984 3.10683 3.29515 3.37185 3.42837 3.51844 3.65167 4.37030 4.41339 4.56839 4.70233 4.73999 4.83642 4.86524 4.91445 5.00698 5.23555 5.27729 5.29311 5.37914 5.46268 5.49807 5.61649 5.69849 5.76778 5.81692 5.94419 6.02831 6.20815 6.22360 6.25466 6.34250 6.40370 6.42939 6.72951 6.75376 6.81282 7.04875 7.30086 7.59766 7.65613 7.91775 8.28403 8.49314 8.95336 9.06118 9.54463 11.03821 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.021602 B = 0.002456 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.856977 B =11397.711621 C =12253.545240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.161 3.839 3 H 0.087 0.913 4 C -0.118 4.118 5 C -0.083 4.083 6 C -0.077 4.077 7 C -0.119 4.119 8 C -0.120 4.120 9 C -0.129 4.129 10 C -0.119 4.119 11 C -0.117 4.117 12 N -0.748 5.748 13 C 0.699 3.301 14 O -0.599 6.599 15 N -0.740 5.740 16 C 0.141 3.859 17 C 0.013 3.987 18 C -0.519 4.519 19 H 0.060 0.940 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.896 3.104 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.284 1.284 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.392 0.608 39 H 0.392 0.608 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.664 -2.726 26.429 26.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.055 3.945 3 H 0.105 0.895 4 C -0.156 4.156 5 C -0.121 4.121 6 C -0.077 4.077 7 C -0.137 4.137 8 C -0.138 4.138 9 C -0.147 4.147 10 C -0.137 4.137 11 C -0.135 4.135 12 N -0.405 5.405 13 C 0.398 3.602 14 O -0.478 6.478 15 N -0.393 5.393 16 C 0.018 3.982 17 C -0.025 4.025 18 C -0.558 4.558 19 H 0.078 0.922 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.225 0.775 39 H 0.225 0.775 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.868 -1.741 26.232 26.356 hybrid contribution 0.396 -0.611 -0.849 1.118 sum -1.472 -2.352 25.383 25.534 Atomic orbital electron populations 1.22201 0.95687 1.01902 1.02468 1.20744 0.93580 0.97317 0.82824 0.89461 1.21878 0.94756 1.01407 0.97574 1.20651 0.95506 1.00733 0.95163 1.19977 0.98307 0.94111 0.95342 1.21091 1.00110 0.99944 0.92539 1.21147 0.99397 0.94858 0.98365 1.21141 1.00838 0.94772 0.97943 1.21164 0.99532 0.99917 0.93044 1.21106 0.99508 0.94261 0.98667 1.45253 1.72697 1.13398 1.09141 1.16085 0.78521 0.85190 0.80369 1.90877 1.57619 1.14559 1.84702 1.45541 1.69822 1.13983 1.09986 1.21567 1.00325 0.95557 0.80784 1.19328 0.96546 0.94632 0.91991 1.21099 1.44017 0.96684 0.93981 0.92170 1.25001 0.95247 0.94928 0.99205 1.69966 1.44725 1.09200 1.29500 0.86459 0.77711 0.80138 0.83272 1.19564 1.20955 1.20966 0.92716 0.92034 0.91765 0.90355 0.91268 0.90506 0.90715 0.86094 0.86242 0.86334 0.86158 0.85997 0.77467 0.77488 0.92859 0.92859 0.96005 0.96003 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.48 37.16 0.35 -1.36 16 2 C 0.16 1.73 2.57 -67.94 -0.17 1.55 16 3 H 0.09 1.12 7.58 -51.93 -0.39 0.72 16 4 C -0.12 -0.94 4.74 -26.73 -0.13 -1.07 16 5 C -0.08 -0.71 5.23 -27.88 -0.15 -0.86 16 6 C -0.08 -0.68 5.13 -104.62 -0.54 -1.22 16 7 C -0.12 -0.99 9.70 -39.58 -0.38 -1.38 16 8 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 9 C -0.13 -0.99 10.05 -39.58 -0.40 -1.39 16 10 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 11 C -0.12 -1.01 9.70 -39.59 -0.38 -1.39 16 12 N -0.75 -9.19 4.53 -58.68 -0.27 -9.45 16 13 C 0.70 12.11 8.53 -86.91 -0.74 11.37 16 14 O -0.60 -12.81 16.01 5.30 0.08 -12.73 16 15 N -0.74 -13.12 5.56 -65.23 -0.36 -13.48 16 16 C 0.14 3.05 5.61 -4.04 -0.02 3.03 16 17 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 18 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 19 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 22 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.71 7.70 -51.93 -0.40 0.31 16 32 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 33 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 35 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 36 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 38 H 0.39 3.79 8.62 -40.82 -0.35 3.44 16 39 H 0.39 5.97 8.49 -40.82 -0.35 5.62 16 40 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 370.82 15.07 5.59 5.59 Total: -1.00 -32.79 370.82 -10.52 -43.31 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -7.37 Total: 4.29 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -3.91 Total: -8.51 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: 0.11 Total: -48.45 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.08 Total: -12.73 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.79 -10.52 -43.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273421552.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.120 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds