Wall clock time and date at job start Tue Mar 31 2020 07:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.52995 * 109.47187 * 119.99498 * 2 1 3 5 5 C 1.53000 * 109.47152 * 185.00354 * 4 2 1 6 6 C 1.50703 * 109.47274 * 180.02562 * 5 4 2 7 7 C 1.38243 * 119.99301 * 269.72701 * 6 5 4 8 8 C 1.38233 * 119.99426 * 179.76580 * 7 6 5 9 9 C 1.38237 * 120.00030 * 0.50392 * 8 7 6 10 10 C 1.38236 * 120.00296 * 359.75012 * 9 8 7 11 11 C 1.38230 * 119.99568 * 359.97438 * 10 9 8 12 12 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 13 13 C 1.34777 * 120.00258 * 85.00009 * 12 2 1 14 14 O 1.21579 * 119.99978 * 359.97438 * 13 12 2 15 15 N 1.34784 * 119.99908 * 179.97438 * 13 12 2 16 16 C 1.46494 * 119.99635 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47001 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.47324 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99992 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00038 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00041 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00004 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47317 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47320 * 120.00236 * 22 20 18 25 25 H 1.48507 * 109.47345 * 239.99791 * 22 20 18 26 26 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 28 28 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 29 29 H 1.08994 * 109.47690 * 305.00545 * 4 2 1 30 30 H 1.09003 * 109.47048 * 65.00365 * 4 2 1 31 31 H 1.09004 * 109.46980 * 300.00055 * 5 4 2 32 32 H 1.08995 * 109.47311 * 60.00363 * 5 4 2 33 33 H 1.08000 * 120.00168 * 359.97438 * 7 6 5 34 34 H 1.08001 * 120.00029 * 180.22991 * 8 7 6 35 35 H 1.08004 * 119.99762 * 179.72933 * 9 8 7 36 36 H 1.07998 * 120.00395 * 179.97438 * 10 9 8 37 37 H 1.08003 * 120.00146 * 179.97438 * 11 10 9 38 38 H 0.96999 * 119.99694 * 264.99399 * 12 2 1 39 39 H 0.96995 * 120.00015 * 359.72369 * 15 13 12 40 40 H 1.09005 * 109.47306 * 299.99972 * 16 15 13 41 41 H 1.09002 * 109.47518 * 60.00210 * 16 15 13 42 42 H 1.09005 * 109.46767 * 299.99934 * 17 16 15 43 43 H 1.08996 * 109.47766 * 59.99412 * 17 16 15 44 44 H 0.97001 * 120.00302 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3137 6 6 4.0673 -1.3239 2.5439 7 6 4.2046 -0.6332 3.7335 8 6 4.6608 -1.2863 4.8632 9 6 4.9897 -2.6276 4.8007 10 6 4.8573 -3.3170 3.6098 11 6 4.3957 -2.6652 2.4816 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8575 1.1613 -2.4119 15 7 2.5968 -0.6535 -3.4575 16 6 2.7362 0.0772 -4.7195 17 6 3.2607 -0.8690 -5.8014 18 6 3.4047 -0.1172 -7.0995 19 1 3.1475 0.9305 -7.1482 20 6 3.8649 -0.7671 -8.2251 21 7 4.1787 -2.0428 -8.1658 22 14 4.0427 0.1646 -9.8343 23 1 3.6266 1.5765 -9.6376 24 1 5.4597 0.1227 -10.2767 25 1 3.1827 -0.4649 -10.8685 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.6054 -0.2617 2.1370 30 1 1.7517 -1.7714 1.2056 31 1 3.9995 -1.0726 0.4260 32 1 3.8531 0.4372 1.3574 33 1 3.9522 0.4158 3.7811 34 1 4.7646 -0.7477 5.7935 35 1 5.3503 -3.1368 5.6822 36 1 5.1146 -4.3647 3.5608 37 1 4.2926 -3.2036 1.5510 38 1 2.2491 -1.6317 -1.1525 39 1 2.8317 -1.5935 -3.4128 40 1 1.7653 0.4704 -5.0209 41 1 3.4368 0.9016 -4.5866 42 1 4.2316 -1.2626 -5.5003 43 1 2.5600 -1.6932 -5.9342 44 1 4.5021 -2.5001 -8.9577 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273421552.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:18 Heat of formation + Delta-G solvation = -55.600647 kcal Electronic energy + Delta-G solvation = -21887.798306 eV Core-core repulsion = 18609.949983 eV Total energy + Delta-G solvation = -3277.848324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 6.36 seconds Orbital eigenvalues (eV) -41.09703 -40.12436 -37.75161 -36.39339 -34.82819 -34.25329 -32.35136 -31.71674 -30.77811 -29.35065 -26.69572 -25.12990 -23.41294 -23.19732 -22.31485 -21.75578 -21.54093 -19.42788 -18.43070 -17.62694 -17.34354 -16.58436 -16.50650 -16.15988 -16.02092 -15.58875 -15.36317 -15.07516 -14.69122 -14.33887 -14.29000 -14.26733 -13.95843 -13.64406 -13.39561 -13.19307 -12.94361 -12.89083 -12.50739 -12.45347 -12.25230 -12.16760 -11.96590 -11.67261 -11.64433 -11.52695 -11.46041 -11.13151 -10.60422 -10.29289 -9.77415 -9.71170 -9.50717 -8.23763 -6.33746 0.49710 0.54775 1.41300 1.42198 1.55438 1.83356 2.23344 2.41916 2.92012 3.11065 3.43261 3.65994 3.96251 4.08933 4.17502 4.22101 4.28528 4.36299 4.49065 4.50000 4.53672 4.66317 4.69862 4.73002 4.79473 4.86285 4.88951 4.97761 5.10311 5.19091 5.24244 5.29901 5.33107 5.38266 5.54273 5.60699 5.63052 5.67245 5.67941 5.79152 5.80684 6.11279 6.18132 6.18544 6.79742 7.19468 7.35668 7.67087 8.88394 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.021602 B = 0.002456 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.856977 B =11397.711621 C =12253.545240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.159 3.841 3 H 0.066 0.934 4 C -0.103 4.103 5 C -0.079 4.079 6 C -0.088 4.088 7 C -0.131 4.131 8 C -0.127 4.127 9 C -0.136 4.136 10 C -0.128 4.128 11 C -0.131 4.131 12 N -0.727 5.727 13 C 0.698 3.302 14 O -0.640 6.640 15 N -0.735 5.735 16 C 0.161 3.839 17 C 0.024 3.976 18 C -0.545 4.545 19 H 0.058 0.942 20 C 0.006 3.994 21 N -0.927 5.927 22 Si 0.965 3.035 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.276 1.276 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.031 0.969 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.130 0.870 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.129 0.871 38 H 0.408 0.592 39 H 0.406 0.594 40 H 0.041 0.959 41 H 0.042 0.958 42 H 0.009 0.991 43 H 0.008 0.992 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.741 -3.209 27.623 27.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.054 3.946 3 H 0.084 0.916 4 C -0.141 4.141 5 C -0.117 4.117 6 C -0.088 4.088 7 C -0.149 4.149 8 C -0.145 4.145 9 C -0.154 4.154 10 C -0.146 4.146 11 C -0.149 4.149 12 N -0.384 5.384 13 C 0.398 3.602 14 O -0.522 6.522 15 N -0.390 5.390 16 C 0.037 3.963 17 C -0.013 4.013 18 C -0.583 4.583 19 H 0.076 0.924 20 C -0.192 4.192 21 N -0.566 5.566 22 Si 0.790 3.210 23 H -0.190 1.190 24 H -0.202 1.202 25 H -0.202 1.202 26 H 0.087 0.913 27 H 0.101 0.899 28 H 0.050 0.950 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.148 0.852 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.147 0.853 38 H 0.245 0.755 39 H 0.241 0.759 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.946 -2.273 27.477 27.639 hybrid contribution 0.430 -0.493 -1.123 1.299 sum -1.516 -2.765 26.354 26.542 Atomic orbital electron populations 1.22158 0.95050 1.02631 1.01963 1.20895 0.94031 0.96559 0.83073 0.91616 1.21773 0.94230 1.01841 0.96277 1.20584 0.95873 1.00219 0.95005 1.20019 0.99008 0.94366 0.95430 1.21302 1.00331 1.00556 0.92700 1.21434 0.98954 0.95173 0.98953 1.21453 1.00440 0.94953 0.98582 1.21434 0.99336 1.00819 0.93047 1.21298 0.99856 0.94407 0.99333 1.45118 1.71254 1.14043 1.07941 1.16197 0.78134 0.84736 0.81181 1.90850 1.59346 1.16574 1.85475 1.45226 1.70223 1.14468 1.09080 1.21035 0.99023 0.94605 0.81652 1.19126 0.95499 0.94449 0.92260 1.21498 1.44351 0.96976 0.95514 0.92362 1.25871 0.94722 0.95832 1.02818 1.70062 1.45244 1.10594 1.30732 0.85393 0.77958 0.78914 0.78760 1.19008 1.20187 1.20206 0.91318 0.89851 0.94971 0.88860 0.89931 0.91291 0.91453 0.85224 0.84494 0.84504 0.84692 0.85308 0.75546 0.75880 0.94037 0.94006 0.97309 0.97319 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 9.48 71.98 0.68 -2.43 16 2 C 0.16 3.25 2.57 44.99 0.12 3.37 16 3 H 0.07 1.67 7.58 -2.39 -0.02 1.66 16 4 C -0.10 -1.44 4.74 30.59 0.14 -1.29 16 5 C -0.08 -1.28 5.23 29.85 0.16 -1.12 16 6 C -0.09 -1.44 5.13 -19.86 -0.10 -1.54 16 7 C -0.13 -2.01 9.70 22.27 0.22 -1.79 16 8 C -0.13 -1.76 10.05 22.27 0.22 -1.54 16 9 C -0.14 -1.85 10.05 22.27 0.22 -1.62 16 10 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 11 C -0.13 -2.07 9.70 22.27 0.22 -1.86 16 12 N -0.73 -17.18 4.53 -457.83 -2.08 -19.26 16 13 C 0.70 24.20 8.53 179.05 1.53 25.72 16 14 O -0.64 -27.90 16.01 -3.96 -0.06 -27.96 16 15 N -0.74 -26.12 5.56 -478.53 -2.66 -28.78 16 16 C 0.16 7.14 5.61 86.38 0.48 7.63 16 17 C 0.02 1.23 5.09 29.85 0.15 1.39 16 18 C -0.54 -30.79 9.11 25.60 0.23 -30.55 16 19 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 20 C 0.01 0.35 5.46 84.65 0.46 0.81 16 21 N -0.93 -54.54 13.29 21.45 0.28 -54.25 16 22 Si 0.97 43.97 29.54 68.60 2.03 45.99 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 24 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 26 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.20 7.70 -2.39 -0.02 1.18 16 32 H 0.07 1.17 8.08 -2.39 -0.02 1.16 16 33 H 0.13 1.65 8.06 -2.91 -0.02 1.63 16 34 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 35 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 36 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 37 H 0.13 1.74 8.06 -2.91 -0.02 1.72 16 38 H 0.41 7.19 8.62 -92.71 -0.80 6.39 16 39 H 0.41 12.16 8.49 -92.71 -0.79 11.37 16 40 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 41 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 43 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -70.64 370.82 1.87 -68.77 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -0.61 Total: 21.95 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 4.96 Total: -6.46 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -4.45 Total: -102.29 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.06 Total: -27.96 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -70.64 1.87 -68.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273421552.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.169 kcal (2) G-P(sol) polarization free energy of solvation -70.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.36 seconds