Wall clock time and date at job start Tue Mar 31 2020 07:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 5 5 C 1.34773 * 119.99909 * 275.00159 * 4 2 1 6 6 O 1.21585 * 120.00512 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00093 * 180.02562 * 5 4 2 8 8 C 1.46499 * 120.00149 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47057 * 179.97438 * 8 7 5 10 10 C 1.50705 * 109.47357 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99499 * 359.97438 * 10 9 8 12 12 C 1.37871 * 119.99929 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00523 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99796 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.46828 * 60.00172 * 14 12 10 16 16 H 1.48492 * 109.47340 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47163 * 300.00623 * 14 12 10 18 18 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 19 19 H 1.09001 * 109.47375 * 300.00034 * 18 2 1 20 20 C 1.52996 * 109.46975 * 179.97438 * 18 2 1 21 21 C 1.50703 * 109.47084 * 59.99992 * 18 2 1 22 22 C 1.38240 * 120.00180 * 59.72852 * 21 18 2 23 23 C 1.38236 * 120.00071 * 179.78892 * 22 21 18 24 24 C 1.38235 * 119.99863 * 0.43952 * 23 22 21 25 25 C 1.38239 * 119.99929 * 359.81286 * 24 23 22 26 26 C 1.38232 * 120.00078 * 359.97438 * 25 24 23 27 27 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 30 30 H 0.97003 * 119.99825 * 95.00368 * 4 2 1 31 31 H 0.97003 * 119.99642 * 359.97438 * 7 5 4 32 32 H 1.08993 * 109.47246 * 299.99523 * 8 7 5 33 33 H 1.09000 * 109.47053 * 60.00461 * 8 7 5 34 34 H 1.09002 * 109.47583 * 299.99956 * 9 8 7 35 35 H 1.09001 * 109.47235 * 60.00320 * 9 8 7 36 36 H 0.97006 * 120.00477 * 180.02562 * 13 12 10 37 37 H 1.09004 * 109.47368 * 60.00217 * 20 18 2 38 38 H 1.09004 * 109.47108 * 180.02562 * 20 18 2 39 39 H 1.09001 * 109.47367 * 299.99815 * 20 18 2 40 40 H 1.08004 * 119.99557 * 359.97438 * 22 21 18 41 41 H 1.07993 * 119.99705 * 180.27073 * 23 22 21 42 42 H 1.07998 * 119.99831 * 179.83250 * 24 23 22 43 43 H 1.08005 * 119.99830 * 180.02562 * 25 24 23 44 44 H 1.08003 * 119.99961 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.8583 1.1615 2.4117 7 7 2.5967 -0.6536 3.4574 8 6 2.7371 0.0773 4.7193 9 6 3.2614 -0.8690 5.8012 10 6 3.4052 -0.1173 7.0994 11 1 3.1488 0.9307 7.1478 12 6 3.8642 -0.7676 8.2252 13 7 4.1769 -2.0435 8.1662 14 14 4.0431 0.1644 9.8343 15 1 2.7210 0.7022 10.2445 16 1 4.5518 -0.7541 10.8844 17 1 4.9991 1.2861 9.6529 18 6 2.0401 -0.7212 -1.2492 19 1 1.6767 -1.7488 -1.2493 20 6 3.5700 -0.7206 -1.2495 21 6 1.5377 -0.0107 -2.4797 22 6 1.8670 1.3145 -2.6956 23 6 1.4098 1.9649 -3.8264 24 6 0.6158 1.2928 -4.7368 25 6 0.2822 -0.0308 -4.5183 26 6 0.7431 -0.6824 -3.3897 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 2.2491 -1.6318 1.1525 31 1 2.8274 -1.5948 3.4138 32 1 3.4382 0.9011 4.5859 33 1 1.7666 0.4712 5.0209 34 1 2.5600 -1.6927 5.9345 35 1 4.2318 -1.2634 5.4998 36 1 4.4995 -2.5011 8.9584 37 1 3.9338 -1.2342 -0.3596 38 1 3.9334 -1.2340 -2.1398 39 1 3.9330 0.3072 -1.2497 40 1 2.4840 1.8407 -1.9822 41 1 1.6707 2.9988 -3.9972 42 1 0.2564 1.8018 -5.6190 43 1 -0.3378 -0.5559 -5.2298 44 1 0.4827 -1.7167 -3.2192 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273573335.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:14 Heat of formation + Delta-G solvation = -30.238539 kcal Electronic energy + Delta-G solvation = -22350.445565 eV Core-core repulsion = 19073.697025 eV Total energy + Delta-G solvation = -3276.748540 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.23878 -39.30150 -36.71313 -34.70510 -33.22780 -32.70903 -31.15399 -30.30203 -29.54057 -28.87326 -24.78784 -24.23684 -23.04397 -22.51495 -20.99185 -20.43930 -20.15251 -18.07740 -17.00907 -16.42752 -16.14272 -15.41140 -15.12857 -15.01328 -14.52999 -14.36354 -14.13820 -13.84223 -13.65963 -13.44667 -13.34253 -13.07196 -12.87101 -12.34621 -12.27563 -12.14958 -11.80648 -11.49899 -11.25594 -11.17239 -11.06805 -10.99675 -10.68599 -10.62679 -10.28292 -9.88554 -9.52692 -9.25200 -9.15648 -9.09655 -8.81958 -8.45952 -8.20991 -6.07381 -4.09961 1.10567 1.16561 3.07022 3.32757 3.36354 3.40228 3.54814 3.65292 4.38598 4.40408 4.46177 4.73993 4.75367 4.79558 4.89322 4.92024 5.09831 5.24346 5.28962 5.29607 5.36129 5.50066 5.59555 5.67560 5.74455 5.79485 5.82661 5.97386 6.01950 6.22592 6.23203 6.28606 6.34223 6.42205 6.43137 6.70106 6.76867 6.81210 7.04680 7.29425 7.59445 7.65802 7.91865 8.28498 8.48912 8.95031 9.05706 9.54615 11.04225 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.044903 B = 0.002376 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.412027 B =11781.741114 C =11934.887522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.171 3.829 3 H 0.088 0.912 4 N -0.748 5.748 5 C 0.699 3.301 6 O -0.598 6.598 7 N -0.740 5.740 8 C 0.141 3.859 9 C 0.013 3.987 10 C -0.521 4.521 11 H 0.059 0.941 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.060 4.060 19 H 0.082 0.918 20 C -0.143 4.143 21 C -0.066 4.066 22 C -0.112 4.112 23 C -0.118 4.118 24 C -0.126 4.126 25 C -0.120 4.120 26 C -0.116 4.116 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.392 0.608 31 H 0.392 0.608 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.262 0.738 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.604 0.348 -26.354 26.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.065 3.935 3 H 0.106 0.894 4 N -0.404 5.404 5 C 0.399 3.601 6 O -0.477 6.477 7 N -0.393 5.393 8 C 0.018 3.982 9 C -0.024 4.024 10 C -0.559 4.559 11 H 0.077 0.923 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.725 3.275 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.080 4.080 19 H 0.101 0.899 20 C -0.200 4.200 21 C -0.067 4.067 22 C -0.130 4.130 23 C -0.136 4.136 24 C -0.144 4.144 25 C -0.138 4.138 26 C -0.134 4.134 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.226 0.774 31 H 0.225 0.775 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.793 1.320 -26.141 26.808 hybrid contribution 0.288 -0.513 0.858 1.040 sum -5.505 0.806 -25.284 25.888 Atomic orbital electron populations 1.22203 0.95569 1.01865 1.02489 1.20725 0.93703 0.97010 0.82026 0.89391 1.45195 1.72748 1.13418 1.09061 1.16057 0.78512 0.85185 0.80326 1.90881 1.57590 1.14528 1.84691 1.45538 1.69881 1.13895 1.09984 1.21568 1.00321 0.95560 0.80767 1.19318 0.96540 0.94620 0.91945 1.21020 1.44318 0.96606 0.94000 0.92283 1.24993 0.95222 0.94927 0.99175 1.69944 1.44593 1.09166 1.29684 0.86569 0.78608 0.79586 0.82750 1.20108 1.21280 1.20112 1.20455 0.96601 0.99333 0.91565 0.89923 1.21833 0.93563 1.02634 1.02010 1.19666 0.97286 0.94188 0.95544 1.21084 1.00072 0.94294 0.97584 1.21158 0.97963 0.99936 0.94499 1.21143 0.98869 0.94927 0.99502 1.21122 1.00127 0.94981 0.97591 1.21057 0.97944 0.99896 0.94474 0.92760 0.91832 0.91889 0.77419 0.77467 0.92848 0.92864 0.96008 0.96005 0.92826 0.91808 0.92456 0.92245 0.85894 0.86106 0.86322 0.86227 0.86143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.24 37.16 0.34 -1.51 16 2 C 0.17 1.95 1.98 -67.93 -0.13 1.82 16 3 H 0.09 1.20 6.81 -51.93 -0.35 0.84 16 4 N -0.75 -9.39 4.39 -58.68 -0.26 -9.65 16 5 C 0.70 12.24 8.53 -86.92 -0.74 11.50 16 6 O -0.60 -12.90 16.01 5.29 0.08 -12.81 16 7 N -0.74 -13.16 5.56 -65.23 -0.36 -13.52 16 8 C 0.14 3.06 5.61 -4.04 -0.02 3.04 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 11 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.90 -26.25 13.29 55.43 0.74 -25.51 16 14 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 C -0.06 -0.52 2.21 -91.77 -0.20 -0.73 16 19 H 0.08 0.62 7.88 -51.93 -0.41 0.21 16 20 C -0.14 -1.23 8.85 37.16 0.33 -0.91 16 21 C -0.07 -0.59 3.52 -104.62 -0.37 -0.96 16 22 C -0.11 -1.03 8.71 -39.58 -0.34 -1.38 16 23 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 24 C -0.13 -0.97 10.05 -39.58 -0.40 -1.37 16 25 C -0.12 -0.92 10.05 -39.58 -0.40 -1.31 16 26 C -0.12 -0.93 9.67 -39.58 -0.38 -1.32 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.67 7.22 -51.93 -0.37 0.29 16 30 H 0.39 3.85 8.40 -40.82 -0.34 3.50 16 31 H 0.39 5.98 8.49 -40.82 -0.35 5.63 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.06 0.56 7.45 -51.93 -0.39 0.17 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.55 7.40 -51.93 -0.38 0.17 16 40 H 0.12 1.12 7.10 -52.48 -0.37 0.75 16 41 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.12 0.68 8.06 -52.48 -0.42 0.25 16 44 H 0.12 0.79 7.95 -52.48 -0.42 0.37 16 LS Contribution 364.11 15.07 5.49 5.49 Total: -1.00 -32.53 364.11 -9.76 -42.29 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -7.16 Total: 4.86 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -3.27 Total: -7.64 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: 0.12 Total: -48.68 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.08 Total: -12.81 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.53 -9.76 -42.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273573335.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.050 kcal (2) G-P(sol) polarization free energy of solvation -32.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds