Wall clock time and date at job start Tue Mar 31 2020 07:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 5 5 C 1.34773 * 119.99909 * 275.00159 * 4 2 1 6 6 O 1.21585 * 120.00512 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00093 * 180.02562 * 5 4 2 8 8 C 1.46499 * 120.00149 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47057 * 179.97438 * 8 7 5 10 10 C 1.50705 * 109.47357 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99499 * 359.97438 * 10 9 8 12 12 C 1.37871 * 119.99929 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00523 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99796 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.46828 * 60.00172 * 14 12 10 16 16 H 1.48492 * 109.47340 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47163 * 300.00623 * 14 12 10 18 18 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 19 19 H 1.09001 * 109.47375 * 300.00034 * 18 2 1 20 20 C 1.52996 * 109.46975 * 179.97438 * 18 2 1 21 21 C 1.50703 * 109.47084 * 59.99992 * 18 2 1 22 22 C 1.38240 * 120.00180 * 59.72852 * 21 18 2 23 23 C 1.38236 * 120.00071 * 179.78892 * 22 21 18 24 24 C 1.38235 * 119.99863 * 0.43952 * 23 22 21 25 25 C 1.38239 * 119.99929 * 359.81286 * 24 23 22 26 26 C 1.38232 * 120.00078 * 359.97438 * 25 24 23 27 27 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 30 30 H 0.97003 * 119.99825 * 95.00368 * 4 2 1 31 31 H 0.97003 * 119.99642 * 359.97438 * 7 5 4 32 32 H 1.08993 * 109.47246 * 299.99523 * 8 7 5 33 33 H 1.09000 * 109.47053 * 60.00461 * 8 7 5 34 34 H 1.09002 * 109.47583 * 299.99956 * 9 8 7 35 35 H 1.09001 * 109.47235 * 60.00320 * 9 8 7 36 36 H 0.97006 * 120.00477 * 180.02562 * 13 12 10 37 37 H 1.09004 * 109.47368 * 60.00217 * 20 18 2 38 38 H 1.09004 * 109.47108 * 180.02562 * 20 18 2 39 39 H 1.09001 * 109.47367 * 299.99815 * 20 18 2 40 40 H 1.08004 * 119.99557 * 359.97438 * 22 21 18 41 41 H 1.07993 * 119.99705 * 180.27073 * 23 22 21 42 42 H 1.07998 * 119.99831 * 179.83250 * 24 23 22 43 43 H 1.08005 * 119.99830 * 180.02562 * 25 24 23 44 44 H 1.08003 * 119.99961 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.8583 1.1615 2.4117 7 7 2.5967 -0.6536 3.4574 8 6 2.7371 0.0773 4.7193 9 6 3.2614 -0.8690 5.8012 10 6 3.4052 -0.1173 7.0994 11 1 3.1488 0.9307 7.1478 12 6 3.8642 -0.7676 8.2252 13 7 4.1769 -2.0435 8.1662 14 14 4.0431 0.1644 9.8343 15 1 2.7210 0.7022 10.2445 16 1 4.5518 -0.7541 10.8844 17 1 4.9991 1.2861 9.6529 18 6 2.0401 -0.7212 -1.2492 19 1 1.6767 -1.7488 -1.2493 20 6 3.5700 -0.7206 -1.2495 21 6 1.5377 -0.0107 -2.4797 22 6 1.8670 1.3145 -2.6956 23 6 1.4098 1.9649 -3.8264 24 6 0.6158 1.2928 -4.7368 25 6 0.2822 -0.0308 -4.5183 26 6 0.7431 -0.6824 -3.3897 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 2.2491 -1.6318 1.1525 31 1 2.8274 -1.5948 3.4138 32 1 3.4382 0.9011 4.5859 33 1 1.7666 0.4712 5.0209 34 1 2.5600 -1.6927 5.9345 35 1 4.2318 -1.2634 5.4998 36 1 4.4995 -2.5011 8.9584 37 1 3.9338 -1.2342 -0.3596 38 1 3.9334 -1.2340 -2.1398 39 1 3.9330 0.3072 -1.2497 40 1 2.4840 1.8407 -1.9822 41 1 1.6707 2.9988 -3.9972 42 1 0.2564 1.8018 -5.6190 43 1 -0.3378 -0.5559 -5.2298 44 1 0.4827 -1.7167 -3.2192 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273573335.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:14 Heat of formation + Delta-G solvation = -49.803049 kcal Electronic energy + Delta-G solvation = -22351.293946 eV Core-core repulsion = 19073.697025 eV Total energy + Delta-G solvation = -3277.596921 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.29396 -40.29281 -37.72656 -36.42417 -34.84041 -34.11686 -31.76711 -31.72972 -30.43012 -30.11182 -26.69377 -25.03369 -23.89541 -23.38133 -22.71913 -21.78187 -20.99403 -19.40530 -18.43440 -17.70090 -17.32423 -16.59973 -16.50283 -16.13641 -15.86705 -15.51632 -15.29800 -15.08585 -14.68576 -14.39736 -14.33231 -14.27452 -14.08092 -13.61471 -13.21599 -13.19160 -12.95295 -12.89188 -12.61815 -12.52691 -12.29799 -12.18182 -11.98715 -11.73941 -11.65718 -11.49038 -11.44927 -11.15654 -10.59253 -10.33196 -9.76982 -9.75358 -9.49727 -8.23119 -6.33331 0.48345 0.55781 1.42247 1.44744 1.52517 1.79092 2.21158 2.42034 2.92532 3.11517 3.37967 3.64496 3.83617 4.05672 4.15652 4.20989 4.32174 4.34667 4.48662 4.52403 4.53278 4.57949 4.67800 4.73934 4.78980 4.87819 4.89927 4.98909 5.09925 5.17776 5.21758 5.26103 5.32275 5.34816 5.53462 5.59060 5.60875 5.66062 5.68969 5.77612 5.80315 6.09076 6.17480 6.18588 6.79549 7.17913 7.35853 7.64981 8.88508 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.044903 B = 0.002376 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.412027 B =11781.741114 C =11934.887522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.171 3.829 3 H 0.062 0.938 4 N -0.726 5.726 5 C 0.699 3.301 6 O -0.640 6.640 7 N -0.734 5.734 8 C 0.161 3.839 9 C 0.025 3.975 10 C -0.547 4.547 11 H 0.058 0.942 12 C 0.007 3.993 13 N -0.926 5.926 14 Si 0.965 3.035 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.269 1.269 18 C -0.048 4.048 19 H 0.105 0.895 20 C -0.142 4.142 21 C -0.076 4.076 22 C -0.130 4.130 23 C -0.130 4.130 24 C -0.131 4.131 25 C -0.125 4.125 26 C -0.120 4.120 27 H 0.072 0.928 28 H 0.032 0.968 29 H 0.071 0.929 30 H 0.410 0.590 31 H 0.407 0.593 32 H 0.042 0.958 33 H 0.041 0.959 34 H 0.009 0.991 35 H 0.009 0.991 36 H 0.266 0.734 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.045 0.955 40 H 0.113 0.887 41 H 0.130 0.870 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.095 -0.451 -27.578 28.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.066 3.934 3 H 0.080 0.920 4 N -0.382 5.382 5 C 0.399 3.601 6 O -0.522 6.522 7 N -0.389 5.389 8 C 0.037 3.963 9 C -0.013 4.013 10 C -0.586 4.586 11 H 0.076 0.924 12 C -0.192 4.192 13 N -0.565 5.565 14 Si 0.789 3.211 15 H -0.194 1.194 16 H -0.205 1.205 17 H -0.194 1.194 18 C -0.067 4.067 19 H 0.123 0.877 20 C -0.199 4.199 21 C -0.077 4.077 22 C -0.148 4.148 23 C -0.148 4.148 24 C -0.149 4.149 25 C -0.143 4.143 26 C -0.137 4.137 27 H 0.091 0.909 28 H 0.051 0.949 29 H 0.089 0.911 30 H 0.247 0.753 31 H 0.242 0.758 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.131 0.869 41 H 0.148 0.852 42 H 0.156 0.844 43 H 0.159 0.841 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.283 0.474 -27.414 28.129 hybrid contribution 0.421 -0.265 1.133 1.238 sum -5.862 0.209 -26.281 26.927 Atomic orbital electron populations 1.22118 0.95227 1.02649 1.01353 1.20810 0.93889 0.96162 0.82543 0.91963 1.45005 1.71321 1.14106 1.07773 1.16160 0.78125 0.84713 0.81136 1.90856 1.59317 1.16594 1.85463 1.45213 1.70220 1.14403 1.09026 1.21040 0.99019 0.94623 0.81615 1.19118 0.95520 0.94435 0.92198 1.21439 1.44641 0.96965 0.95529 0.92372 1.25864 0.94694 0.95833 1.02788 1.70046 1.45114 1.10550 1.30830 0.85506 0.78874 0.78397 0.78319 1.19373 1.20544 1.19371 1.20356 0.96479 0.99934 0.89890 0.87726 1.21824 0.93584 1.01985 1.02543 1.19689 0.98027 0.94102 0.95882 1.21158 1.00714 0.94900 0.98026 1.21370 0.98255 1.00644 0.94500 1.21443 0.98329 0.95280 0.99871 1.21450 0.99963 0.95034 0.97815 1.21306 0.97362 1.00787 0.94291 0.90928 0.94890 0.91061 0.75325 0.75787 0.93990 0.94061 0.97300 0.97263 0.92540 0.91916 0.91205 0.93556 0.86906 0.85165 0.84447 0.84075 0.84300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 9.24 71.98 0.67 -2.74 16 2 C 0.17 3.80 1.98 44.99 0.09 3.89 16 3 H 0.06 1.75 6.81 -2.39 -0.02 1.73 16 4 N -0.73 -17.57 4.39 -457.82 -2.01 -19.58 16 5 C 0.70 24.50 8.53 179.05 1.53 26.02 16 6 O -0.64 -28.27 16.01 -3.99 -0.06 -28.34 16 7 N -0.73 -26.09 5.56 -478.55 -2.66 -28.75 16 8 C 0.16 7.15 5.61 86.38 0.48 7.64 16 9 C 0.02 1.26 5.09 29.85 0.15 1.42 16 10 C -0.55 -30.90 9.11 25.60 0.23 -30.66 16 11 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 12 C 0.01 0.40 5.46 84.65 0.46 0.86 16 13 N -0.93 -54.44 13.29 21.44 0.28 -54.15 16 14 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 15 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 16 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 18 C -0.05 -0.75 2.21 -11.54 -0.03 -0.77 16 19 H 0.10 1.22 7.88 -2.39 -0.02 1.20 16 20 C -0.14 -2.28 8.85 71.98 0.64 -1.64 16 21 C -0.08 -1.24 3.52 -19.86 -0.07 -1.31 16 22 C -0.13 -2.36 8.71 22.27 0.19 -2.17 16 23 C -0.13 -2.07 10.05 22.27 0.22 -1.84 16 24 C -0.13 -1.78 10.05 22.27 0.22 -1.56 16 25 C -0.12 -1.58 10.05 22.27 0.22 -1.36 16 26 C -0.12 -1.63 9.67 22.27 0.22 -1.41 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 1.45 7.22 -2.39 -0.02 1.43 16 30 H 0.41 7.20 8.40 -92.71 -0.78 6.42 16 31 H 0.41 12.11 8.49 -92.71 -0.79 11.32 16 32 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.27 14.71 8.31 -92.70 -0.77 13.94 16 37 H 0.06 1.00 7.45 -2.39 -0.02 0.99 16 38 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.05 0.86 7.40 -2.39 -0.02 0.84 16 40 H 0.11 2.18 7.10 -2.91 -0.02 2.16 16 41 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 42 H 0.14 1.27 8.06 -2.91 -0.02 1.24 16 43 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 44 H 0.14 1.33 7.95 -2.91 -0.02 1.31 16 Total: -1.00 -70.31 364.11 2.24 -68.07 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -0.58 Total: 22.47 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 5.24 Total: -5.65 kcal Atomic # 7 Polarization: -98.09 SS G_CDS: -4.38 Total: -102.48 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.06 Total: -28.34 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -70.31 2.24 -68.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273573335.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.272 kcal (2) G-P(sol) polarization free energy of solvation -70.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds