Wall clock time and date at job start Tue Mar 31 2020 07:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47301 * 2 1 4 4 C 1.50701 * 109.46889 * 239.99940 * 2 1 3 5 5 C 1.38232 * 120.00092 * 303.70079 * 4 2 1 6 6 C 1.38236 * 119.99770 * 179.78988 * 5 4 2 7 7 C 1.38231 * 120.00225 * 0.44036 * 6 5 4 8 8 C 1.38237 * 119.99857 * 359.81223 * 7 6 5 9 9 C 1.38227 * 120.00018 * 359.97438 * 8 7 6 10 10 C 1.53000 * 109.47183 * 119.99952 * 2 1 3 11 11 H 1.08994 * 109.47103 * 56.40753 * 10 2 1 12 12 C 1.52997 * 109.47074 * 296.39979 * 10 2 1 13 13 N 1.46507 * 109.46931 * 176.40486 * 10 2 1 14 14 C 1.34774 * 119.99923 * 205.00056 * 13 10 2 15 15 O 1.21591 * 119.99892 * 359.72446 * 14 13 10 16 16 N 1.34775 * 120.00198 * 179.97438 * 14 13 10 17 17 C 1.46501 * 120.00187 * 179.72170 * 16 14 13 18 18 C 1.52995 * 109.47259 * 179.97438 * 17 16 14 19 19 C 1.50698 * 109.47082 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00140 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99716 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99790 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00406 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47283 * 89.99944 * 23 21 19 25 25 H 1.48497 * 109.47495 * 210.00407 * 23 21 19 26 26 H 1.48506 * 109.46682 * 330.00104 * 23 21 19 27 27 H 1.08998 * 109.47095 * 299.99895 * 1 2 3 28 28 H 1.09001 * 109.47316 * 60.00083 * 1 2 3 29 29 H 1.08996 * 109.46884 * 180.02562 * 1 2 3 30 30 H 1.07999 * 119.99803 * 359.97438 * 5 4 2 31 31 H 1.08006 * 119.99650 * 180.27257 * 6 5 4 32 32 H 1.07999 * 120.00063 * 179.83171 * 7 6 5 33 33 H 1.07999 * 119.99523 * 179.97438 * 8 7 6 34 34 H 1.07997 * 120.00092 * 179.97438 * 9 8 7 35 35 H 1.09005 * 109.47072 * 185.68999 * 12 10 2 36 36 H 1.09003 * 109.47351 * 305.69294 * 12 10 2 37 37 H 1.09000 * 109.46897 * 65.69500 * 12 10 2 38 38 H 0.97002 * 120.00252 * 24.99680 * 13 10 2 39 39 H 0.96996 * 120.00146 * 359.72525 * 16 14 13 40 40 H 1.08999 * 109.46886 * 300.00453 * 17 16 14 41 41 H 1.09005 * 109.46571 * 60.00005 * 17 16 14 42 42 H 1.09002 * 109.47184 * 300.00688 * 18 17 16 43 43 H 1.09003 * 109.46663 * 60.00483 * 18 17 16 44 44 H 0.97001 * 119.99994 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6364 -2.0095 -1.4886 6 6 2.0937 -2.6596 -2.6196 7 6 2.9541 -2.0139 -3.4877 8 6 3.3541 -0.7166 -3.2268 9 6 2.8933 -0.0650 -2.0982 10 6 2.0400 -0.7212 1.2492 11 1 1.6251 -1.7286 1.2820 12 6 1.6053 0.0504 2.4968 13 7 3.5025 -0.7967 1.2067 14 6 4.1467 -1.7725 1.8768 15 8 3.5144 -2.5873 2.5208 16 7 5.4921 -1.8423 1.8373 17 6 6.1927 -2.8994 2.5707 18 6 7.7009 -2.7530 2.3597 19 6 8.4215 -3.8408 3.1136 20 1 7.8599 -4.5640 3.6864 21 6 9.7978 -3.9122 3.0730 22 7 10.4267 -4.8618 3.7306 23 14 10.7693 -2.6610 2.0830 24 1 11.1030 -1.4988 2.9450 25 1 12.0221 -3.2861 1.5881 26 1 9.9549 -2.2034 0.9285 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 0.9675 -2.5154 -0.8082 31 1 1.7809 -3.6730 -2.8235 32 1 3.3135 -2.5227 -4.3698 33 1 4.0266 -0.2123 -3.9049 34 1 3.2062 0.9484 -1.8942 35 1 2.0524 -0.4056 3.3802 36 1 1.9347 1.0864 2.4164 37 1 0.5191 0.0201 2.5826 38 1 4.0072 -0.1443 0.6961 39 1 5.9965 -1.1925 1.3233 40 1 5.9643 -2.8170 3.6333 41 1 5.8676 -3.8729 2.2036 42 1 7.9288 -2.8356 1.2970 43 1 8.0263 -1.7795 2.7264 44 1 11.3950 -4.9118 3.7024 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273573337.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:18 Heat of formation + Delta-G solvation = -26.290672 kcal Electronic energy + Delta-G solvation = -22896.339357 eV Core-core repulsion = 19619.762009 eV Total energy + Delta-G solvation = -3276.577348 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.23926 -39.20204 -36.77634 -34.80382 -33.26047 -32.65662 -31.09147 -30.79443 -29.76633 -28.38952 -25.33013 -24.39182 -22.93211 -22.16928 -20.76440 -20.47501 -20.14689 -17.96292 -17.04147 -16.86923 -16.32270 -15.59532 -15.13485 -14.94197 -14.48091 -14.23502 -14.09255 -13.89332 -13.63537 -13.52077 -13.29161 -13.06583 -12.70256 -12.57000 -12.46934 -12.14186 -11.87651 -11.74878 -11.44309 -11.32329 -11.17021 -10.93373 -10.69356 -10.34862 -10.20510 -9.94463 -9.68678 -9.29020 -9.05850 -8.99301 -8.82881 -8.59949 -8.31357 -6.08428 -4.08064 1.21345 1.26726 3.04575 3.26885 3.34417 3.36057 3.61645 3.63422 4.34929 4.40064 4.48415 4.61831 4.78316 4.85035 4.96474 5.01505 5.10763 5.24041 5.24615 5.28311 5.33135 5.39664 5.51319 5.65459 5.68113 5.78825 5.86136 5.88786 5.97398 6.15486 6.19159 6.29829 6.33158 6.39129 6.45878 6.62306 6.71166 6.85990 6.89145 7.11933 7.29051 7.37320 7.70942 8.37968 8.50197 8.96103 9.01378 9.51929 11.04718 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.017002 B = 0.003607 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.451672 B = 7760.519385 C = 8666.338087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.060 4.060 3 H 0.082 0.918 4 C -0.071 4.071 5 C -0.109 4.109 6 C -0.116 4.116 7 C -0.125 4.125 8 C -0.118 4.118 9 C -0.120 4.120 10 C 0.170 3.830 11 H 0.088 0.912 12 C -0.165 4.165 13 N -0.745 5.745 14 C 0.701 3.299 15 O -0.596 6.596 16 N -0.743 5.743 17 C 0.149 3.851 18 C -0.021 4.021 19 C -0.521 4.521 20 H 0.076 0.924 21 C 0.069 3.931 22 N -0.899 5.899 23 Si 0.882 3.118 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.266 1.266 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.391 0.609 39 H 0.390 0.610 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.021 0.979 43 H 0.017 0.983 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.628 13.732 -13.669 27.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.079 4.079 3 H 0.100 0.900 4 C -0.071 4.071 5 C -0.126 4.126 6 C -0.134 4.134 7 C -0.143 4.143 8 C -0.136 4.136 9 C -0.138 4.138 10 C 0.065 3.935 11 H 0.106 0.894 12 C -0.223 4.223 13 N -0.400 5.400 14 C 0.401 3.599 15 O -0.475 6.475 16 N -0.397 5.397 17 C 0.027 3.973 18 C -0.059 4.059 19 C -0.559 4.559 20 H 0.094 0.906 21 C -0.133 4.133 22 N -0.538 5.538 23 Si 0.709 3.291 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.191 1.191 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.224 0.776 39 H 0.223 0.777 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.039 0.961 43 H 0.035 0.965 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.016 12.854 -13.000 27.109 hybrid contribution 1.290 1.151 -0.995 1.995 sum -18.726 14.005 -13.995 27.252 Atomic orbital electron populations 1.21843 0.93230 1.02642 1.02280 1.20508 0.96710 0.99122 0.91610 0.89972 1.19739 0.97186 0.94530 0.95666 1.20988 1.00178 0.94343 0.97140 1.21154 0.97701 0.99788 0.94772 1.21144 0.98196 0.95182 0.99745 1.21112 0.99881 0.95146 0.97500 1.21023 0.98020 0.99822 0.94963 1.20748 0.79496 1.00253 0.93033 0.89411 1.22260 1.01338 1.00140 0.98599 1.45141 1.06781 1.32686 1.55441 1.16009 0.82257 0.81500 0.80112 1.90889 1.66362 1.43086 1.47130 1.45509 1.04469 1.34844 1.54850 1.21340 0.92616 0.88291 0.95088 1.19790 0.90678 0.97898 0.97551 1.20928 0.91749 1.12753 1.30493 0.90598 1.24998 0.97701 0.95478 0.95131 1.69908 1.08762 1.32831 1.42272 0.86750 0.79586 0.81725 0.80997 1.20254 1.21299 1.19116 0.91655 0.92151 0.92076 0.86221 0.86198 0.86308 0.86249 0.86315 0.91622 0.92693 0.91691 0.77590 0.77725 0.92262 0.92281 0.96088 0.96523 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.69 37.16 0.32 -0.64 16 2 C -0.06 -0.49 2.19 -91.77 -0.20 -0.69 16 3 H 0.08 0.57 7.88 -51.93 -0.41 0.16 16 4 C -0.07 -0.68 4.24 -104.62 -0.44 -1.12 16 5 C -0.11 -1.14 8.78 -39.58 -0.35 -1.48 16 6 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 7 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 8 C -0.12 -1.10 10.05 -39.59 -0.40 -1.50 16 9 C -0.12 -1.09 9.67 -39.58 -0.38 -1.47 16 10 C 0.17 1.84 1.97 -67.93 -0.13 1.71 16 11 H 0.09 1.15 7.18 -51.93 -0.37 0.77 16 12 C -0.16 -1.65 9.06 37.16 0.34 -1.31 16 13 N -0.74 -9.30 4.57 -58.68 -0.27 -9.57 16 14 C 0.70 12.13 8.53 -86.92 -0.74 11.39 16 15 O -0.60 -12.72 16.01 5.29 0.08 -12.64 16 16 N -0.74 -12.91 5.56 -65.23 -0.36 -13.27 16 17 C 0.15 3.18 5.61 -4.04 -0.02 3.16 16 18 C -0.02 -0.50 4.15 -27.89 -0.12 -0.62 16 19 C -0.52 -14.83 9.66 -34.44 -0.33 -15.16 16 20 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 21 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 22 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 23 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 27 H 0.06 0.38 6.65 -51.93 -0.35 0.04 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.43 7.19 -51.93 -0.37 0.05 16 30 H 0.12 1.19 7.14 -52.49 -0.37 0.81 16 31 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 32 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.12 0.84 7.95 -52.49 -0.42 0.42 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.53 6.82 -51.93 -0.35 0.18 16 38 H 0.39 3.99 8.56 -40.82 -0.35 3.64 16 39 H 0.39 5.70 8.49 -40.82 -0.35 5.35 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 43 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 44 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 360.30 15.07 5.43 5.43 Total: -1.00 -33.70 360.30 -9.44 -43.14 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -7.08 Total: 6.20 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -3.35 Total: -9.06 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 0.14 Total: -49.71 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.08 Total: -12.64 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.70 -9.44 -43.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273573337.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.854 kcal (2) G-P(sol) polarization free energy of solvation -33.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds