Wall clock time and date at job start Tue Mar 31 2020 07:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47301 * 2 1 4 4 C 1.50701 * 109.46889 * 239.99940 * 2 1 3 5 5 C 1.38232 * 120.00092 * 303.70079 * 4 2 1 6 6 C 1.38236 * 119.99770 * 179.78988 * 5 4 2 7 7 C 1.38231 * 120.00225 * 0.44036 * 6 5 4 8 8 C 1.38237 * 119.99857 * 359.81223 * 7 6 5 9 9 C 1.38227 * 120.00018 * 359.97438 * 8 7 6 10 10 C 1.53000 * 109.47183 * 119.99952 * 2 1 3 11 11 H 1.08994 * 109.47103 * 56.40753 * 10 2 1 12 12 C 1.52997 * 109.47074 * 296.39979 * 10 2 1 13 13 N 1.46507 * 109.46931 * 176.40486 * 10 2 1 14 14 C 1.34774 * 119.99923 * 205.00056 * 13 10 2 15 15 O 1.21591 * 119.99892 * 359.72446 * 14 13 10 16 16 N 1.34775 * 120.00198 * 179.97438 * 14 13 10 17 17 C 1.46501 * 120.00187 * 179.72170 * 16 14 13 18 18 C 1.52995 * 109.47259 * 179.97438 * 17 16 14 19 19 C 1.50698 * 109.47082 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00140 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99716 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99790 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00406 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47283 * 89.99944 * 23 21 19 25 25 H 1.48497 * 109.47495 * 210.00407 * 23 21 19 26 26 H 1.48506 * 109.46682 * 330.00104 * 23 21 19 27 27 H 1.08998 * 109.47095 * 299.99895 * 1 2 3 28 28 H 1.09001 * 109.47316 * 60.00083 * 1 2 3 29 29 H 1.08996 * 109.46884 * 180.02562 * 1 2 3 30 30 H 1.07999 * 119.99803 * 359.97438 * 5 4 2 31 31 H 1.08006 * 119.99650 * 180.27257 * 6 5 4 32 32 H 1.07999 * 120.00063 * 179.83171 * 7 6 5 33 33 H 1.07999 * 119.99523 * 179.97438 * 8 7 6 34 34 H 1.07997 * 120.00092 * 179.97438 * 9 8 7 35 35 H 1.09005 * 109.47072 * 185.68999 * 12 10 2 36 36 H 1.09003 * 109.47351 * 305.69294 * 12 10 2 37 37 H 1.09000 * 109.46897 * 65.69500 * 12 10 2 38 38 H 0.97002 * 120.00252 * 24.99680 * 13 10 2 39 39 H 0.96996 * 120.00146 * 359.72525 * 16 14 13 40 40 H 1.08999 * 109.46886 * 300.00453 * 17 16 14 41 41 H 1.09005 * 109.46571 * 60.00005 * 17 16 14 42 42 H 1.09002 * 109.47184 * 300.00688 * 18 17 16 43 43 H 1.09003 * 109.46663 * 60.00483 * 18 17 16 44 44 H 0.97001 * 119.99994 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6364 -2.0095 -1.4886 6 6 2.0937 -2.6596 -2.6196 7 6 2.9541 -2.0139 -3.4877 8 6 3.3541 -0.7166 -3.2268 9 6 2.8933 -0.0650 -2.0982 10 6 2.0400 -0.7212 1.2492 11 1 1.6251 -1.7286 1.2820 12 6 1.6053 0.0504 2.4968 13 7 3.5025 -0.7967 1.2067 14 6 4.1467 -1.7725 1.8768 15 8 3.5144 -2.5873 2.5208 16 7 5.4921 -1.8423 1.8373 17 6 6.1927 -2.8994 2.5707 18 6 7.7009 -2.7530 2.3597 19 6 8.4215 -3.8408 3.1136 20 1 7.8599 -4.5640 3.6864 21 6 9.7978 -3.9122 3.0730 22 7 10.4267 -4.8618 3.7306 23 14 10.7693 -2.6610 2.0830 24 1 11.1030 -1.4988 2.9450 25 1 12.0221 -3.2861 1.5881 26 1 9.9549 -2.2034 0.9285 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 0.9675 -2.5154 -0.8082 31 1 1.7809 -3.6730 -2.8235 32 1 3.3135 -2.5227 -4.3698 33 1 4.0266 -0.2123 -3.9049 34 1 3.2062 0.9484 -1.8942 35 1 2.0524 -0.4056 3.3802 36 1 1.9347 1.0864 2.4164 37 1 0.5191 0.0201 2.5826 38 1 4.0072 -0.1443 0.6961 39 1 5.9965 -1.1925 1.3233 40 1 5.9643 -2.8170 3.6333 41 1 5.8676 -3.8729 2.2036 42 1 7.9288 -2.8356 1.2970 43 1 8.0263 -1.7795 2.7264 44 1 11.3950 -4.9118 3.7024 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273573337.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:17 Heat of formation + Delta-G solvation = -48.242710 kcal Electronic energy + Delta-G solvation = -22897.291269 eV Core-core repulsion = 19619.762009 eV Total energy + Delta-G solvation = -3277.529259 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.29846 -40.21354 -37.74410 -36.46700 -34.82702 -34.16491 -32.13359 -31.76491 -31.09158 -29.19153 -26.85162 -25.51953 -23.69784 -23.06913 -22.57192 -21.79574 -20.96720 -19.31121 -18.88774 -17.77084 -17.47079 -16.62154 -16.33136 -16.25604 -15.89318 -15.46763 -15.35221 -15.12037 -14.83767 -14.58949 -14.38059 -14.20734 -13.84320 -13.50636 -13.34570 -13.19365 -13.06775 -12.82162 -12.63238 -12.43791 -12.17330 -12.15896 -12.02366 -11.76140 -11.60426 -11.53003 -11.41528 -11.21352 -10.78512 -10.31069 -9.77585 -9.70840 -9.54986 -8.29744 -6.37024 0.49527 0.54652 1.38879 1.41912 1.53201 1.79107 2.22652 2.37193 2.91042 3.05170 3.38227 3.67087 3.79077 4.06847 4.18298 4.29324 4.30789 4.35322 4.42176 4.45739 4.49727 4.57626 4.65119 4.73873 4.75654 4.79198 4.99539 5.02355 5.07279 5.16190 5.18772 5.20922 5.33143 5.41296 5.42354 5.46332 5.61323 5.64059 5.67845 5.68739 5.77965 6.07889 6.17330 6.23829 6.70142 7.18654 7.27444 7.66295 8.87208 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.017002 B = 0.003607 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.451672 B = 7760.519385 C = 8666.338087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.049 4.049 3 H 0.106 0.894 4 C -0.078 4.078 5 C -0.128 4.128 6 C -0.135 4.135 7 C -0.137 4.137 8 C -0.126 4.126 9 C -0.122 4.122 10 C 0.168 3.832 11 H 0.060 0.940 12 C -0.160 4.160 13 N -0.723 5.723 14 C 0.699 3.301 15 O -0.641 6.641 16 N -0.734 5.734 17 C 0.166 3.834 18 C -0.010 4.010 19 C -0.539 4.539 20 H 0.028 0.972 21 C 0.004 3.996 22 N -0.951 5.951 23 Si 0.960 3.040 24 H -0.264 1.264 25 H -0.286 1.286 26 H -0.238 1.238 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.051 0.949 30 H 0.114 0.886 31 H 0.124 0.876 32 H 0.131 0.869 33 H 0.139 0.861 34 H 0.145 0.855 35 H 0.031 0.969 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.407 0.593 39 H 0.408 0.592 40 H 0.040 0.960 41 H 0.036 0.964 42 H 0.035 0.965 43 H 0.036 0.964 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.574 17.497 -15.866 30.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.067 4.067 3 H 0.124 0.876 4 C -0.078 4.078 5 C -0.146 4.146 6 C -0.153 4.153 7 C -0.155 4.155 8 C -0.144 4.144 9 C -0.140 4.140 10 C 0.063 3.937 11 H 0.078 0.922 12 C -0.218 4.218 13 N -0.379 5.379 14 C 0.398 3.602 15 O -0.523 6.523 16 N -0.389 5.389 17 C 0.042 3.958 18 C -0.048 4.048 19 C -0.578 4.578 20 H 0.046 0.954 21 C -0.193 4.193 22 N -0.591 5.591 23 Si 0.782 3.218 24 H -0.189 1.189 25 H -0.212 1.212 26 H -0.161 1.161 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.132 0.868 31 H 0.142 0.858 32 H 0.149 0.851 33 H 0.157 0.843 34 H 0.162 0.838 35 H 0.050 0.950 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.243 0.757 39 H 0.244 0.756 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.997 16.678 -15.239 30.170 hybrid contribution 1.184 -0.107 -0.279 1.222 sum -18.812 16.571 -15.518 29.484 Atomic orbital electron populations 1.21850 0.92142 1.02501 1.03376 1.20468 0.97491 0.99539 0.89244 0.87551 1.19921 0.97344 0.94198 0.96371 1.21129 1.00793 0.95290 0.97396 1.21357 0.98396 1.00354 0.95232 1.21405 0.98156 0.95844 1.00136 1.21440 0.99959 0.94970 0.97994 1.21342 0.97288 1.00881 0.94497 1.20890 0.78080 0.99530 0.95172 0.92216 1.22213 1.02467 1.00706 0.96412 1.44984 1.07580 1.31337 1.53975 1.16167 0.81975 0.81904 0.80112 1.90866 1.67223 1.45098 1.49152 1.45122 1.04680 1.34333 1.54776 1.20829 0.92005 0.88616 0.94388 1.19626 0.91033 0.96721 0.97391 1.21249 0.92357 1.13432 1.30729 0.95386 1.26086 0.98913 0.97930 0.96374 1.70080 1.09364 1.35354 1.44292 0.85523 0.77709 0.78577 0.79965 1.18857 1.21187 1.16104 0.90343 0.91213 0.92952 0.86800 0.85838 0.85105 0.84302 0.83761 0.94969 0.90537 0.89743 0.75678 0.75612 0.94182 0.94505 0.94669 0.94580 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.69 71.98 0.63 -0.94 16 2 C -0.05 -0.65 2.19 -11.54 -0.03 -0.68 16 3 H 0.11 0.98 7.88 -2.38 -0.02 0.96 16 4 C -0.08 -1.33 4.24 -19.86 -0.08 -1.41 16 5 C -0.13 -2.63 8.78 22.27 0.20 -2.44 16 6 C -0.14 -2.76 10.05 22.27 0.22 -2.53 16 7 C -0.14 -2.51 10.05 22.27 0.22 -2.29 16 8 C -0.13 -2.02 10.05 22.27 0.22 -1.79 16 9 C -0.12 -1.82 9.67 22.27 0.22 -1.61 16 10 C 0.17 3.39 1.97 44.99 0.09 3.48 16 11 H 0.06 1.58 7.18 -2.39 -0.02 1.56 16 12 C -0.16 -2.90 9.06 71.98 0.65 -2.25 16 13 N -0.72 -16.73 4.57 -457.81 -2.09 -18.82 16 14 C 0.70 23.80 8.53 179.06 1.53 25.33 16 15 O -0.64 -28.10 16.01 -4.00 -0.06 -28.16 16 16 N -0.73 -24.54 5.56 -478.53 -2.66 -27.20 16 17 C 0.17 7.15 5.61 86.38 0.48 7.63 16 18 C -0.01 -0.45 4.15 29.85 0.12 -0.33 16 19 C -0.54 -31.39 9.66 25.60 0.25 -31.15 16 20 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 21 C 0.00 0.23 5.47 84.65 0.46 0.69 16 22 N -0.95 -59.91 13.96 21.45 0.30 -59.61 16 23 Si 0.96 42.71 27.47 68.60 1.88 44.59 16 24 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 25 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 26 H -0.24 -9.44 6.54 99.48 0.65 -8.79 16 27 H 0.08 0.67 6.65 -2.39 -0.02 0.66 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.68 7.19 -2.39 -0.02 0.66 16 30 H 0.11 2.35 7.14 -2.91 -0.02 2.33 16 31 H 0.12 2.25 8.06 -2.91 -0.02 2.22 16 32 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 34 H 0.14 1.36 7.95 -2.91 -0.02 1.34 16 35 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 1.20 6.82 -2.39 -0.02 1.18 16 38 H 0.41 6.92 8.56 -92.71 -0.79 6.13 16 39 H 0.41 10.69 8.49 -92.71 -0.79 9.90 16 40 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 42 H 0.04 1.52 7.20 -2.39 -0.02 1.50 16 43 H 0.04 1.52 7.57 -2.39 -0.02 1.51 16 44 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -76.38 360.30 1.91 -74.47 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: -0.64 Total: 25.02 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: 5.19 Total: -10.29 kcal Atomic # 7 Polarization: -101.19 SS G_CDS: -4.45 Total: -105.64 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.06 Total: -28.16 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.88 Total: 44.59 kcal Total: -76.38 1.91 -74.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273573337.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.226 kcal (2) G-P(sol) polarization free energy of solvation -76.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds