Wall clock time and date at job start Tue Mar 31 2020 08:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34778 * 119.99654 * 2 1 4 4 O 1.21547 * 120.00224 * 0.02562 * 3 2 1 5 5 C 1.47847 * 119.99473 * 179.97438 * 3 2 1 6 6 C 1.39572 * 120.14176 * 180.02562 * 5 3 2 7 7 C 1.37957 * 119.85204 * 180.02562 * 6 5 3 8 8 C 1.38360 * 120.14480 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.85281 * 179.97438 * 8 7 6 10 10 N 1.46897 * 109.47200 * 90.00101 * 9 8 7 11 11 C 1.46894 * 111.00684 * 66.04294 * 10 9 8 12 12 C 1.46901 * 110.99845 * 190.00088 * 10 9 8 13 13 H 1.09000 * 109.46846 * 186.09057 * 12 10 9 14 14 C 1.53000 * 109.46983 * 306.08707 * 12 10 9 15 15 C 1.53001 * 109.47456 * 66.08749 * 12 10 9 16 16 C 1.50704 * 109.46766 * 62.82902 * 15 12 10 17 17 H 1.08001 * 120.00278 * 355.10126 * 16 15 12 18 18 C 1.37880 * 119.99641 * 175.10850 * 16 15 12 19 19 N 1.31511 * 120.00417 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99861 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47200 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47008 * 119.99978 * 20 18 16 23 23 H 1.48500 * 109.47174 * 240.00364 * 20 18 16 24 24 C 1.38360 * 120.29481 * 0.22707 * 8 7 6 25 25 C 1.37966 * 120.13996 * 359.49395 * 24 8 7 26 26 H 1.08999 * 109.47148 * 300.00214 * 1 2 3 27 27 H 1.09006 * 109.46826 * 59.99482 * 1 2 3 28 28 H 1.08994 * 109.47025 * 179.97438 * 1 2 3 29 29 H 0.96996 * 119.99818 * 180.02562 * 2 1 3 30 30 H 1.07993 * 120.07622 * 359.97438 * 6 5 3 31 31 H 1.08008 * 119.92989 * 179.97438 * 7 6 5 32 32 H 1.08998 * 109.47343 * 329.99381 * 9 8 7 33 33 H 1.08999 * 109.46707 * 209.99315 * 9 8 7 34 34 H 1.08998 * 109.47657 * 177.48753 * 11 10 9 35 35 H 1.09004 * 109.47061 * 57.47961 * 11 10 9 36 36 H 1.09003 * 109.46760 * 297.48449 * 11 10 9 37 37 H 1.08996 * 109.47278 * 300.00062 * 14 12 10 38 38 H 1.09000 * 109.47044 * 60.00471 * 14 12 10 39 39 H 1.09006 * 109.47165 * 180.02562 * 14 12 10 40 40 H 1.08993 * 109.47412 * 182.82491 * 15 12 10 41 41 H 1.08995 * 109.46947 * 302.83014 * 15 12 10 42 42 H 0.96992 * 120.00304 * 180.02562 * 19 18 16 43 43 H 1.07992 * 119.93122 * 179.74903 * 24 8 7 44 44 H 1.07996 * 120.07029 * 180.24821 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2199 0.0005 5 6 3.6174 1.1672 0.0006 6 6 4.3183 2.3742 0.0011 7 6 5.6978 2.3672 0.0011 8 6 6.3865 1.1672 0.0000 9 6 7.8936 1.1672 -0.0005 10 7 8.3838 1.1662 1.3842 11 6 8.0346 -0.0874 2.0656 12 6 9.8327 1.4044 1.4299 13 1 10.1872 1.2916 2.4544 14 6 10.5444 0.3925 0.5296 15 6 10.1322 2.8224 0.9397 16 6 9.4884 3.8209 1.8669 17 1 8.8572 3.4795 2.6740 18 6 9.7052 5.1703 1.6847 19 7 10.4733 5.5861 0.7016 20 14 8.9066 6.4080 2.8336 21 1 8.0958 5.6893 3.8492 22 1 9.9601 7.2030 3.5142 23 1 8.0295 7.3155 2.0511 24 6 5.6978 -0.0329 -0.0058 25 6 4.3182 -0.0398 0.0000 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.9500 -0.8400 -0.0004 30 1 3.7819 3.3115 0.0007 31 1 6.2415 3.3004 0.0011 32 1 8.2568 2.0574 -0.5140 33 1 8.2567 0.2775 -0.5150 34 1 8.4477 -0.0801 3.0742 35 1 8.4469 -0.9299 1.5101 36 1 6.9500 -0.1826 2.1179 37 1 10.3311 -0.6177 0.8789 38 1 10.1899 0.5053 -0.4949 39 1 11.6196 0.5689 0.5639 40 1 11.2103 2.9820 0.9260 41 1 9.7331 2.9509 -0.0664 42 1 10.6260 6.5354 0.5736 43 1 6.2414 -0.9660 -0.0107 44 1 3.7818 -0.9772 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276319196.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:48 Heat of formation + Delta-G solvation = -9.076591 kcal Electronic energy + Delta-G solvation = -23073.376466 eV Core-core repulsion = 19797.545577 eV Total energy + Delta-G solvation = -3275.830889 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.21905 -38.86316 -37.32808 -34.83480 -33.11530 -32.01930 -30.92461 -30.18397 -27.89836 -27.26710 -26.19763 -24.33052 -22.85738 -22.33040 -21.88744 -20.36382 -18.78650 -18.23009 -16.29088 -16.19001 -15.87133 -15.33984 -14.93807 -14.87599 -14.78118 -14.31257 -14.07713 -13.76038 -13.47540 -13.24129 -13.08820 -12.85759 -12.54268 -12.29704 -12.16275 -11.86797 -11.67375 -11.44733 -11.26631 -11.13926 -10.83764 -10.65304 -10.61387 -10.38628 -10.03017 -9.98911 -9.38096 -9.22670 -8.98136 -8.83811 -8.62086 -8.26217 -7.53859 -5.89632 -3.87475 0.92692 1.51409 2.87160 3.03966 3.38916 3.47253 3.53054 3.93303 4.56513 4.59593 4.69768 4.80321 4.97624 5.01081 5.15732 5.24380 5.45786 5.47778 5.53530 5.53851 5.62859 5.69212 5.77294 5.82256 5.93164 5.95853 6.04498 6.10819 6.16937 6.24829 6.26073 6.34811 6.49544 6.52594 6.62008 6.86465 6.92982 7.04612 7.28871 7.49029 7.62533 7.84547 7.96732 8.08347 8.11796 8.57573 9.20405 9.75132 11.22235 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.015489 B = 0.004219 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.317950 B = 6635.189455 C = 7980.194865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.736 5.736 3 C 0.561 3.439 4 O -0.539 6.539 5 C -0.151 4.151 6 C -0.059 4.059 7 C -0.098 4.098 8 C -0.032 4.032 9 C 0.085 3.915 10 N -0.508 5.508 11 C 0.020 3.980 12 C 0.086 3.914 13 H 0.072 0.928 14 C -0.184 4.184 15 C 0.029 3.971 16 C -0.490 4.490 17 H 0.063 0.937 18 C 0.051 3.949 19 N -0.904 5.904 20 Si 0.886 3.114 21 H -0.273 1.273 22 H -0.288 1.288 23 H -0.286 1.286 24 C -0.127 4.127 25 C -0.092 4.092 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.401 0.599 30 H 0.133 0.867 31 H 0.141 0.859 32 H 0.100 0.900 33 H 0.036 0.964 34 H 0.062 0.938 35 H 0.016 0.984 36 H 0.061 0.939 37 H 0.040 0.960 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.023 0.977 41 H 0.015 0.985 42 H 0.257 0.743 43 H 0.122 0.878 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.697 -16.240 -2.782 20.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.389 5.389 3 C 0.349 3.651 4 O -0.416 6.416 5 C -0.154 4.154 6 C -0.078 4.078 7 C -0.117 4.117 8 C -0.033 4.033 9 C -0.042 4.042 10 N -0.230 5.230 11 C -0.128 4.128 12 C -0.022 4.022 13 H 0.090 0.910 14 C -0.243 4.243 15 C -0.008 4.008 16 C -0.529 4.529 17 H 0.081 0.919 18 C -0.148 4.148 19 N -0.545 5.545 20 Si 0.715 3.285 21 H -0.197 1.197 22 H -0.214 1.214 23 H -0.213 1.213 24 C -0.146 4.146 25 C -0.111 4.111 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.236 0.764 30 H 0.151 0.849 31 H 0.158 0.842 32 H 0.118 0.882 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.034 0.966 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.041 0.959 41 H 0.033 0.967 42 H 0.066 0.934 43 H 0.140 0.860 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.326 -14.940 -2.590 20.186 hybrid contribution 0.200 -0.404 0.207 0.496 sum -13.126 -15.344 -2.382 20.333 Atomic orbital electron populations 1.21528 0.79497 1.02098 1.02437 1.45721 1.07722 1.08769 1.76686 1.18440 0.87575 0.83492 0.75548 1.90763 1.70101 1.31217 1.49546 1.19756 0.91911 0.94814 1.08930 1.21291 0.94072 0.97389 0.95001 1.21278 0.93313 0.99073 0.98021 1.20201 0.96297 0.92741 0.94087 1.21205 0.89441 1.02173 0.91398 1.62109 1.15146 1.32133 1.13633 1.22460 1.00872 0.90632 0.98883 1.21980 0.84121 0.97469 0.98642 0.90969 1.22532 1.01684 0.99185 1.00938 1.19224 0.96867 0.88307 0.96430 1.21226 1.27871 0.90298 1.13469 0.91862 1.25001 0.95621 0.98620 0.95566 1.69964 1.38786 1.14603 1.31108 0.86623 0.79182 0.81547 0.81188 1.19720 1.21427 1.21257 1.20972 0.93626 0.97886 1.02073 1.21080 0.94445 0.96273 0.99258 0.92159 0.92194 0.90706 0.76431 0.84893 0.84162 0.88227 0.94591 0.91965 0.96569 0.92044 0.94117 0.92912 0.92423 0.95918 0.96696 0.93362 0.85982 0.86346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.67 10.70 59.85 0.64 1.32 16 2 N -0.74 -6.92 5.66 -68.04 -0.39 -7.31 16 3 C 0.56 7.64 7.77 -12.33 -0.10 7.54 16 4 O -0.54 -9.31 16.35 5.32 0.09 -9.22 16 5 C -0.15 -2.04 5.87 -104.97 -0.62 -2.65 16 6 C -0.06 -0.89 9.60 -39.19 -0.38 -1.27 16 7 C -0.10 -1.58 9.68 -39.64 -0.38 -1.97 16 8 C -0.03 -0.49 4.88 -104.53 -0.51 -1.00 16 9 C 0.09 1.39 4.06 -4.97 -0.02 1.37 16 10 N -0.51 -9.11 4.31 -236.33 -1.02 -10.13 16 11 C 0.02 0.30 8.74 60.06 0.52 0.82 16 12 C 0.09 1.66 2.28 -67.71 -0.15 1.50 16 13 H 0.07 1.44 7.98 -51.93 -0.41 1.03 16 14 C -0.18 -2.98 8.45 37.16 0.31 -2.67 16 15 C 0.03 0.70 4.35 -27.88 -0.12 0.58 16 16 C -0.49 -13.35 8.80 -34.44 -0.30 -13.65 16 17 H 0.06 1.75 7.68 -52.49 -0.40 1.34 16 18 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 19 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 20 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 21 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 C -0.13 -1.55 8.02 -39.64 -0.32 -1.87 16 25 C -0.09 -1.02 9.54 -39.18 -0.37 -1.39 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.40 2.59 6.86 -40.82 -0.28 2.31 16 30 H 0.13 2.04 7.65 -52.49 -0.40 1.64 16 31 H 0.14 2.44 8.06 -52.48 -0.42 2.02 16 32 H 0.10 1.88 5.98 -51.93 -0.31 1.57 16 33 H 0.04 0.53 6.75 -51.93 -0.35 0.18 16 34 H 0.06 0.91 8.00 -51.93 -0.42 0.49 16 35 H 0.02 0.21 6.88 -51.93 -0.36 -0.15 16 36 H 0.06 0.86 6.34 -51.93 -0.33 0.53 16 37 H 0.04 0.58 6.83 -51.93 -0.35 0.22 16 38 H 0.05 0.84 6.55 -51.93 -0.34 0.50 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.01 0.38 6.25 -51.93 -0.32 0.06 16 42 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.12 1.26 8.04 -52.49 -0.42 0.84 16 44 H 0.12 0.88 6.41 -52.49 -0.34 0.54 16 LS Contribution 353.97 15.07 5.33 5.33 Total: -1.00 -32.46 353.97 -8.87 -41.33 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.71 Total: 1.10 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -1.89 Total: -11.98 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: -0.67 Total: -43.47 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.46 -8.87 -41.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276319196.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.253 kcal (2) G-P(sol) polarization free energy of solvation -32.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds