Wall clock time and date at job start Tue Mar 31 2020 08:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34778 * 119.99654 * 2 1 4 4 O 1.21547 * 120.00224 * 0.02562 * 3 2 1 5 5 C 1.47847 * 119.99473 * 179.97438 * 3 2 1 6 6 C 1.39572 * 120.14176 * 180.02562 * 5 3 2 7 7 C 1.37957 * 119.85204 * 180.02562 * 6 5 3 8 8 C 1.38360 * 120.14480 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.85281 * 179.97438 * 8 7 6 10 10 N 1.46897 * 109.47200 * 90.00101 * 9 8 7 11 11 C 1.46894 * 111.00684 * 66.04294 * 10 9 8 12 12 C 1.46901 * 110.99845 * 190.00088 * 10 9 8 13 13 H 1.09000 * 109.46846 * 186.09057 * 12 10 9 14 14 C 1.53000 * 109.46983 * 306.08707 * 12 10 9 15 15 C 1.53001 * 109.47456 * 66.08749 * 12 10 9 16 16 C 1.50704 * 109.46766 * 62.82902 * 15 12 10 17 17 H 1.08001 * 120.00278 * 355.10126 * 16 15 12 18 18 C 1.37880 * 119.99641 * 175.10850 * 16 15 12 19 19 N 1.31511 * 120.00417 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99861 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47200 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47008 * 119.99978 * 20 18 16 23 23 H 1.48500 * 109.47174 * 240.00364 * 20 18 16 24 24 C 1.38360 * 120.29481 * 0.22707 * 8 7 6 25 25 C 1.37966 * 120.13996 * 359.49395 * 24 8 7 26 26 H 1.08999 * 109.47148 * 300.00214 * 1 2 3 27 27 H 1.09006 * 109.46826 * 59.99482 * 1 2 3 28 28 H 1.08994 * 109.47025 * 179.97438 * 1 2 3 29 29 H 0.96996 * 119.99818 * 180.02562 * 2 1 3 30 30 H 1.07993 * 120.07622 * 359.97438 * 6 5 3 31 31 H 1.08008 * 119.92989 * 179.97438 * 7 6 5 32 32 H 1.08998 * 109.47343 * 329.99381 * 9 8 7 33 33 H 1.08999 * 109.46707 * 209.99315 * 9 8 7 34 34 H 1.08998 * 109.47657 * 177.48753 * 11 10 9 35 35 H 1.09004 * 109.47061 * 57.47961 * 11 10 9 36 36 H 1.09003 * 109.46760 * 297.48449 * 11 10 9 37 37 H 1.08996 * 109.47278 * 300.00062 * 14 12 10 38 38 H 1.09000 * 109.47044 * 60.00471 * 14 12 10 39 39 H 1.09006 * 109.47165 * 180.02562 * 14 12 10 40 40 H 1.08993 * 109.47412 * 182.82491 * 15 12 10 41 41 H 1.08995 * 109.46947 * 302.83014 * 15 12 10 42 42 H 0.96992 * 120.00304 * 180.02562 * 19 18 16 43 43 H 1.07992 * 119.93122 * 179.74903 * 24 8 7 44 44 H 1.07996 * 120.07029 * 180.24821 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2199 0.0005 5 6 3.6174 1.1672 0.0006 6 6 4.3183 2.3742 0.0011 7 6 5.6978 2.3672 0.0011 8 6 6.3865 1.1672 0.0000 9 6 7.8936 1.1672 -0.0005 10 7 8.3838 1.1662 1.3842 11 6 8.0346 -0.0874 2.0656 12 6 9.8327 1.4044 1.4299 13 1 10.1872 1.2916 2.4544 14 6 10.5444 0.3925 0.5296 15 6 10.1322 2.8224 0.9397 16 6 9.4884 3.8209 1.8669 17 1 8.8572 3.4795 2.6740 18 6 9.7052 5.1703 1.6847 19 7 10.4733 5.5861 0.7016 20 14 8.9066 6.4080 2.8336 21 1 8.0958 5.6893 3.8492 22 1 9.9601 7.2030 3.5142 23 1 8.0295 7.3155 2.0511 24 6 5.6978 -0.0329 -0.0058 25 6 4.3182 -0.0398 0.0000 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.9500 -0.8400 -0.0004 30 1 3.7819 3.3115 0.0007 31 1 6.2415 3.3004 0.0011 32 1 8.2568 2.0574 -0.5140 33 1 8.2567 0.2775 -0.5150 34 1 8.4477 -0.0801 3.0742 35 1 8.4469 -0.9299 1.5101 36 1 6.9500 -0.1826 2.1179 37 1 10.3311 -0.6177 0.8789 38 1 10.1899 0.5053 -0.4949 39 1 11.6196 0.5689 0.5639 40 1 11.2103 2.9820 0.9260 41 1 9.7331 2.9509 -0.0664 42 1 10.6260 6.5354 0.5736 43 1 6.2414 -0.9660 -0.0107 44 1 3.7818 -0.9772 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276319196.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:47 Heat of formation + Delta-G solvation = -31.010356 kcal Electronic energy + Delta-G solvation = -23074.327586 eV Core-core repulsion = 19797.545577 eV Total energy + Delta-G solvation = -3276.782008 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.27678 -40.05623 -38.62380 -35.76464 -35.04621 -33.45031 -32.05954 -31.57382 -29.19618 -28.76195 -27.18031 -25.74464 -24.52365 -23.42320 -23.16362 -21.41965 -20.24996 -19.20574 -18.33879 -17.35087 -17.07621 -16.62768 -16.28136 -16.09549 -15.90479 -15.77036 -15.34829 -14.99341 -14.58226 -14.47272 -14.16661 -14.06571 -13.85259 -13.64867 -13.33596 -13.20332 -13.10165 -12.91550 -12.69839 -12.54831 -12.41627 -12.32599 -12.15795 -11.84033 -11.71912 -11.13698 -11.06440 -11.01597 -10.48037 -10.26398 -9.91205 -9.71100 -8.85680 -8.09788 -6.12979 -0.16379 0.44828 1.38414 1.41290 1.52889 1.79839 2.20541 2.46686 2.82644 3.22848 3.41665 3.69557 3.84778 3.95733 4.02130 4.23819 4.31646 4.42598 4.46243 4.49851 4.52716 4.62205 4.62726 4.68340 4.77991 4.81231 4.92415 4.95906 5.05959 5.10986 5.14908 5.22925 5.27187 5.29224 5.37179 5.42378 5.52537 5.70857 5.74436 5.91870 5.93815 6.33408 6.46044 6.49377 6.56716 7.02305 7.16521 7.52991 9.02292 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.015489 B = 0.004219 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.317950 B = 6635.189455 C = 7980.194865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.715 5.715 3 C 0.556 3.444 4 O -0.587 6.587 5 C -0.155 4.155 6 C -0.075 4.075 7 C -0.121 4.121 8 C -0.043 4.043 9 C 0.093 3.907 10 N -0.534 5.534 11 C 0.023 3.977 12 C 0.095 3.905 13 H 0.065 0.935 14 C -0.174 4.174 15 C 0.034 3.966 16 C -0.493 4.493 17 H 0.057 0.943 18 C -0.002 4.002 19 N -0.939 5.939 20 Si 0.946 3.054 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.286 1.286 24 C -0.115 4.115 25 C -0.070 4.070 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.118 0.882 29 H 0.419 0.581 30 H 0.116 0.884 31 H 0.107 0.893 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.054 0.946 40 H -0.006 1.006 41 H -0.004 1.004 42 H 0.257 0.743 43 H 0.157 0.843 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.214 -20.266 -2.219 24.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.368 5.368 3 C 0.344 3.656 4 O -0.468 6.468 5 C -0.158 4.158 6 C -0.094 4.094 7 C -0.140 4.140 8 C -0.044 4.044 9 C -0.034 4.034 10 N -0.258 5.258 11 C -0.124 4.124 12 C -0.013 4.013 13 H 0.083 0.917 14 C -0.232 4.232 15 C -0.003 4.003 16 C -0.531 4.531 17 H 0.075 0.925 18 C -0.198 4.198 19 N -0.582 5.582 20 Si 0.773 3.227 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.212 1.212 24 C -0.134 4.134 25 C -0.088 4.088 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.136 0.864 29 H 0.257 0.743 30 H 0.134 0.866 31 H 0.125 0.875 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.012 0.988 41 H 0.014 0.986 42 H 0.066 0.934 43 H 0.175 0.825 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -14.849 -19.029 -2.017 24.221 hybrid contribution 0.605 0.785 0.015 0.991 sum -14.244 -18.243 -2.003 23.232 Atomic orbital electron populations 1.21738 0.78143 1.04653 1.01525 1.45613 1.08614 1.08147 1.74408 1.18532 0.87601 0.84038 0.75401 1.90744 1.70845 1.33180 1.52063 1.19883 0.92228 0.95043 1.08679 1.21188 0.93707 0.98093 0.96449 1.21054 0.93718 0.98703 1.00486 1.20155 0.95495 0.93487 0.95277 1.21045 0.90419 1.01365 0.90560 1.61944 1.13931 1.34969 1.14919 1.22479 1.01670 0.89605 0.98677 1.21639 0.86008 0.95098 0.98603 0.91670 1.22389 1.01043 0.99591 1.00222 1.19085 0.94498 0.91577 0.95140 1.21520 1.27154 0.91106 1.13338 0.92462 1.25756 0.96337 1.00627 0.97051 1.70077 1.40362 1.14911 1.32808 0.85669 0.78347 0.79291 0.79370 1.19217 1.20719 1.21234 1.21268 0.94150 0.97672 1.00269 1.21528 0.94119 0.97023 0.96111 0.93212 0.93085 0.86361 0.74289 0.86563 0.87486 0.92145 0.92119 0.92115 0.94021 0.90968 0.91046 0.92809 0.92645 0.98764 0.98580 0.93371 0.82543 0.81343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.02 10.70 127.77 1.37 2.39 16 2 N -0.72 -11.04 5.66 -487.46 -2.76 -13.80 16 3 C 0.56 14.37 7.77 86.79 0.67 15.04 16 4 O -0.59 -20.59 16.35 -3.86 -0.06 -20.65 16 5 C -0.16 -3.96 5.87 -20.09 -0.12 -4.08 16 6 C -0.08 -2.39 9.60 22.53 0.22 -2.18 16 7 C -0.12 -4.11 9.68 22.23 0.22 -3.89 16 8 C -0.04 -1.27 4.88 -19.80 -0.10 -1.36 16 9 C 0.09 3.01 4.06 85.56 0.35 3.36 16 10 N -0.53 -18.73 4.31 -901.62 -3.89 -22.61 16 11 C 0.02 0.61 8.74 127.69 1.12 1.73 16 12 C 0.09 3.66 2.28 44.92 0.10 3.76 16 13 H 0.07 2.58 7.98 -2.39 -0.02 2.57 16 14 C -0.17 -5.31 8.45 71.98 0.61 -4.70 16 15 C 0.03 1.74 4.35 29.85 0.13 1.87 16 16 C -0.49 -27.83 8.80 25.60 0.23 -27.60 16 17 H 0.06 3.24 7.68 -2.91 -0.02 3.22 16 18 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 19 N -0.94 -57.79 13.29 21.45 0.28 -57.51 16 20 Si 0.95 46.42 29.54 68.60 2.03 48.45 16 21 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 22 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 23 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 24 C -0.12 -2.36 8.02 22.23 0.18 -2.18 16 25 C -0.07 -1.24 9.54 22.53 0.21 -1.03 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.42 3.21 6.86 -92.71 -0.64 2.57 16 30 H 0.12 3.95 7.65 -2.91 -0.02 3.93 16 31 H 0.11 4.21 8.06 -2.91 -0.02 4.19 16 32 H 0.06 2.41 5.98 -2.39 -0.01 2.40 16 33 H 0.06 1.63 6.75 -2.39 -0.02 1.62 16 34 H 0.06 1.60 8.00 -2.39 -0.02 1.58 16 35 H 0.04 0.88 6.88 -2.38 -0.02 0.87 16 36 H 0.07 1.73 6.34 -2.39 -0.02 1.71 16 37 H 0.07 1.76 6.83 -2.39 -0.02 1.74 16 38 H 0.05 1.62 6.55 -2.39 -0.02 1.61 16 39 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 40 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 41 H 0.00 -0.22 6.25 -2.39 -0.01 -0.23 16 42 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 43 H 0.16 2.21 8.04 -2.91 -0.02 2.19 16 44 H 0.17 1.31 6.41 -2.91 -0.02 1.30 16 Total: -1.00 -75.49 353.97 1.60 -73.88 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.36 Total: 10.75 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 5.64 Total: -18.51 kcal Atomic # 7 Polarization: -87.55 SS G_CDS: -6.36 Total: -93.92 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.06 Total: -20.65 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -75.49 1.60 -73.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276319196.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.872 kcal (2) G-P(sol) polarization free energy of solvation -75.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds