Wall clock time and date at job start Tue Mar 31 2020 07:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47109 * 32.64064 * 3 2 1 5 5 C 1.36929 * 120.00018 * 262.00453 * 4 3 2 6 6 H 1.08007 * 120.00259 * 211.95898 * 5 4 3 7 7 C 1.38810 * 120.00077 * 31.96655 * 5 4 3 8 8 N 1.31617 * 119.99989 * 6.13478 * 7 5 4 9 9 Si 1.86799 * 120.00202 * 186.13312 * 7 5 4 10 10 H 1.48504 * 109.47206 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46998 * 120.00125 * 9 7 5 12 12 H 1.48496 * 109.47289 * 239.99655 * 9 7 5 13 13 C 1.46503 * 119.99908 * 82.01315 * 4 3 2 14 14 C 1.50698 * 109.47690 * 89.99700 * 13 4 3 15 15 O 1.21284 * 119.99794 * 4.66573 * 14 13 4 16 16 N 1.34775 * 119.99953 * 184.66409 * 14 13 4 17 17 C 1.46496 * 120.00119 * 8.50588 * 16 14 13 18 18 H 1.08997 * 109.47095 * 359.97438 * 17 16 14 19 19 C 1.53002 * 109.46833 * 239.99612 * 17 16 14 20 20 C 1.53007 * 109.46994 * 120.00042 * 17 16 14 21 21 C 1.52998 * 117.49818 * 248.74615 * 20 17 16 22 22 C 1.53005 * 117.49753 * 180.08623 * 20 17 16 23 23 C 1.46501 * 119.99537 * 188.50240 * 16 14 13 24 24 C 1.53001 * 117.50082 * 16.30256 * 23 16 14 25 25 C 1.53001 * 117.50404 * 307.64063 * 23 16 14 26 26 H 4.40641 * 5.51332 * 180.02562 * 4 1 2 27 27 H 1.08999 * 109.47113 * 272.63716 * 3 2 1 28 28 H 1.09004 * 109.46761 * 152.63774 * 3 2 1 29 29 H 0.96998 * 120.00417 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.47159 * 329.99317 * 13 4 3 31 31 H 1.08999 * 109.46854 * 210.00044 * 13 4 3 32 32 H 1.08997 * 109.47539 * 300.00045 * 19 17 16 33 33 H 1.08998 * 109.46968 * 60.00851 * 19 17 16 34 34 H 1.09008 * 109.46840 * 179.97438 * 19 17 16 35 35 H 1.09002 * 115.54667 * 34.41620 * 20 17 16 36 36 H 1.08998 * 117.49721 * 359.97438 * 21 20 17 37 37 H 1.09000 * 117.50067 * 145.01930 * 21 20 17 38 38 H 1.09002 * 117.49326 * 214.97883 * 22 20 17 39 39 H 1.08999 * 117.49574 * 359.97412 * 22 20 17 40 40 H 1.09000 * 115.54975 * 161.96775 * 23 16 14 41 41 H 1.08994 * 117.49723 * 359.97438 * 24 23 16 42 42 H 1.08998 * 117.50050 * 145.01610 * 24 23 16 43 43 H 1.09000 * 117.49859 * 214.97921 * 25 23 16 44 44 H 1.09004 * 117.49421 * 359.97438 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1622 -0.7450 5 6 3.5191 -2.2927 -0.0746 6 1 4.3100 -2.9127 -0.4704 7 6 2.8920 -2.6420 1.1135 8 7 1.8499 -1.9567 1.5338 9 14 3.5272 -4.0846 2.1159 10 1 4.7011 -4.6840 1.4318 11 1 3.9293 -3.6112 3.4648 12 1 2.4565 -5.1050 2.2483 13 6 3.2128 -1.1155 -2.2072 14 6 4.5658 -0.5974 -2.6220 15 8 5.4138 -0.3769 -1.7834 16 7 4.8334 -0.3791 -3.9247 17 6 3.7596 -0.4650 -4.9175 18 1 2.8228 -0.7138 -4.4188 19 6 4.0965 -1.5517 -5.9404 20 6 3.6163 0.8806 -5.6315 21 6 2.3476 1.6921 -5.3614 22 6 2.5385 0.9962 -6.7114 23 6 6.1982 -0.0558 -4.3479 24 6 7.3314 -0.3485 -3.3625 25 6 6.9055 1.0968 -3.6323 26 1 -1.0498 -0.0001 -0.0003 27 1 3.0094 -0.0465 1.0266 28 1 3.0089 0.9136 -0.4724 29 1 1.4114 -2.2010 2.3638 30 1 2.4368 -0.4535 -2.5914 31 1 3.0680 -2.1175 -2.6109 32 1 5.0334 -1.3034 -6.4391 33 1 4.1986 -2.5104 -5.4318 34 1 3.2973 -1.6160 -6.6789 35 1 4.5436 1.4325 -5.7848 36 1 1.6149 1.2671 -4.6754 37 1 2.4402 2.7779 -5.3374 38 1 2.7567 1.6244 -7.5750 39 1 1.9319 0.1134 -6.9134 40 1 6.4062 -0.1927 -5.4091 41 1 7.0615 -0.7812 -2.3992 42 1 8.2850 -0.6775 -3.7754 43 1 7.5790 1.7180 -4.2227 44 1 6.3552 1.6149 -2.8469 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281382462.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:52 Heat of formation + Delta-G solvation = 101.875425 kcal Electronic energy + Delta-G solvation = -24141.151618 eV Core-core repulsion = 20870.131969 eV Total energy + Delta-G solvation = -3271.019649 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -41.39740 -38.79392 -37.93746 -36.74525 -35.07204 -33.52395 -32.98156 -30.84803 -28.96476 -27.86339 -25.13039 -24.69888 -23.23989 -23.05865 -22.87545 -21.42439 -19.65661 -19.31923 -18.48947 -18.02148 -17.36495 -16.65404 -16.24081 -15.91520 -15.59984 -15.45498 -15.28079 -15.05202 -14.64715 -14.15938 -14.10673 -13.98371 -13.42001 -13.28579 -13.18764 -12.86795 -12.69287 -12.62062 -12.44231 -12.32477 -12.20329 -12.03728 -11.88329 -11.65375 -11.26261 -11.16063 -10.99006 -10.86518 -10.71782 -10.40739 -10.23669 -9.25363 -8.76166 -7.84968 -5.44700 1.43081 1.45598 1.55472 1.76658 1.96765 2.34868 2.50836 2.59330 2.96078 3.08448 3.29082 3.64298 3.75527 3.77989 4.01852 4.04269 4.08274 4.16594 4.19092 4.23197 4.33253 4.47521 4.51875 4.55571 4.61033 4.75857 4.84847 4.86311 4.91838 4.95239 5.05655 5.09930 5.15639 5.21664 5.32076 5.36874 5.40458 5.45603 5.62309 5.65084 5.91547 6.30472 6.55594 7.06933 7.36835 7.44371 7.74292 8.21174 9.15000 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.015468 B = 0.005484 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.775181 B = 5104.903427 C = 6015.862915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.132 4.132 3 C 0.282 3.718 4 N -0.576 5.576 5 C -0.267 4.267 6 H 0.055 0.945 7 C -0.034 4.034 8 N -0.910 5.910 9 Si 0.966 3.034 10 H -0.274 1.274 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.136 3.864 14 C 0.484 3.516 15 O -0.553 6.553 16 N -0.582 5.582 17 C 0.162 3.838 18 H 0.087 0.913 19 C -0.153 4.153 20 C -0.166 4.166 21 C -0.194 4.194 22 C -0.149 4.149 23 C 0.084 3.916 24 C -0.207 4.207 25 C -0.184 4.184 26 H 0.226 0.774 27 H 0.057 0.943 28 H 0.041 0.959 29 H 0.250 0.750 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.157 0.843 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.119 0.881 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.668 5.295 -19.370 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.134 4.134 3 C 0.157 3.843 4 N -0.295 5.295 5 C -0.397 4.397 6 H 0.073 0.927 7 C -0.231 4.231 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.199 1.199 11 H -0.218 1.218 12 H -0.212 1.212 13 C 0.006 3.994 14 C 0.271 3.729 15 O -0.430 6.430 16 N -0.314 5.314 17 C 0.060 3.940 18 H 0.105 0.895 19 C -0.211 4.211 20 C -0.185 4.185 21 C -0.231 4.231 22 C -0.187 4.187 23 C -0.020 4.020 24 C -0.244 4.244 25 C -0.223 4.223 26 H 0.242 0.758 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.174 0.826 41 H 0.110 0.890 42 H 0.127 0.873 43 H 0.137 0.863 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.025 5.347 -18.746 19.727 hybrid contribution 0.095 -0.667 1.321 1.483 sum 3.120 4.679 -17.425 18.310 Atomic orbital electron populations 1.24934 0.96132 1.04694 1.04235 1.24273 0.95618 0.96420 0.97137 1.17336 0.83408 0.87490 0.96070 1.43532 1.73894 1.12141 0.99898 1.19192 1.13063 1.01456 1.05947 0.92740 1.25863 0.96156 1.00481 1.00641 1.70127 1.21236 1.41555 1.22369 0.85243 0.77571 0.79466 0.78295 1.19903 1.21818 1.21244 1.20853 0.92337 1.00809 0.85388 1.22716 0.91862 0.76663 0.81650 1.90513 1.48655 1.51681 1.52177 1.47681 1.08131 1.69460 1.06172 1.20911 0.89562 0.94633 0.88935 0.89536 1.22100 1.03521 0.96955 0.98551 1.22554 0.94777 0.97388 1.03789 1.23075 0.99837 0.99433 1.00775 1.23034 1.00481 1.03053 0.92113 1.21777 0.80529 1.02165 0.97571 1.23590 0.98511 0.99734 1.02577 1.23155 1.04032 0.91693 1.03374 0.75771 0.92492 0.94118 0.94064 0.90218 0.89919 0.91097 0.93141 0.89307 0.87410 0.89672 0.88772 0.87206 0.87574 0.82567 0.89003 0.87344 0.86302 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.47 19.25 74.32 1.43 -11.04 16 2 C -0.13 -6.52 11.25 31.13 0.35 -6.17 16 3 C 0.28 14.49 5.40 84.57 0.46 14.94 16 4 N -0.58 -29.70 1.96 -716.91 -1.41 -31.10 16 5 C -0.27 -15.11 9.56 84.03 0.80 -14.30 16 6 H 0.05 3.16 7.84 -2.91 -0.02 3.14 16 7 C -0.03 -1.93 5.14 84.86 0.44 -1.50 16 8 N -0.91 -53.06 9.35 21.65 0.20 -52.85 16 9 Si 0.97 46.28 29.56 68.60 2.03 48.31 16 10 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 11 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 12 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 13 C 0.14 5.65 4.67 85.63 0.40 6.05 16 14 C 0.48 19.08 7.51 87.66 0.66 19.74 16 15 O -0.55 -26.29 12.18 -3.04 -0.04 -26.32 16 16 N -0.58 -16.91 2.73 -774.03 -2.11 -19.02 16 17 C 0.16 3.55 2.77 45.00 0.12 3.67 16 18 H 0.09 2.07 5.46 -2.39 -0.01 2.05 16 19 C -0.15 -2.58 9.03 71.98 0.65 -1.93 16 20 C -0.17 -3.05 5.21 -10.79 -0.06 -3.10 16 21 C -0.19 -3.67 10.18 30.62 0.31 -3.36 16 22 C -0.15 -2.06 9.74 30.62 0.30 -1.76 16 23 C 0.08 2.13 5.35 44.99 0.24 2.37 16 24 C -0.21 -6.20 9.63 30.62 0.29 -5.91 16 25 C -0.18 -5.05 9.87 30.62 0.30 -4.75 16 26 H 0.23 7.91 7.80 -4.43 -0.03 7.88 16 27 H 0.06 3.28 6.91 -2.39 -0.02 3.26 16 28 H 0.04 1.95 8.13 -2.38 -0.02 1.93 16 29 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 30 H 0.08 3.00 7.09 -2.39 -0.02 2.98 16 31 H 0.08 3.32 8.04 -2.39 -0.02 3.30 16 32 H 0.07 1.02 6.92 -2.39 -0.02 1.01 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.09 1.12 7.29 -2.38 -0.02 1.10 16 35 H 0.11 2.00 7.49 -2.39 -0.02 1.98 16 36 H 0.08 1.81 8.05 -2.39 -0.02 1.79 16 37 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.11 1.27 7.61 -2.39 -0.02 1.25 16 40 H 0.16 2.81 6.99 -2.39 -0.02 2.79 16 41 H 0.09 3.71 5.31 -2.71 -0.01 3.70 16 42 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 43 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.06 2.16 7.53 -2.39 -0.02 2.14 16 Total: -1.00 -69.87 359.15 6.35 -63.52 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 0.97 Total: 24.51 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 6.70 Total: -7.04 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -3.32 Total: -102.98 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.04 Total: -26.32 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -69.87 6.35 -63.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281382462.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.391 kcal (2) G-P(sol) polarization free energy of solvation -69.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds