Wall clock time and date at job start Tue Mar 31 2020 07:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47472 * 2 1 4 4 C 1.50701 * 109.47199 * 120.00389 * 2 1 3 5 5 C 1.38237 * 119.99935 * 44.85380 * 4 2 1 6 6 C 1.38235 * 120.00054 * 180.35252 * 5 4 2 7 7 C 1.38238 * 119.99939 * 359.87539 * 6 5 4 8 8 C 1.38240 * 119.99974 * 0.10494 * 7 6 5 9 9 C 1.38234 * 119.99804 * 359.96820 * 8 7 6 10 10 C 1.53001 * 109.47139 * 240.00107 * 2 1 3 11 11 H 1.08999 * 109.47263 * 55.30475 * 10 2 1 12 12 N 1.46896 * 109.47185 * 295.30049 * 10 2 1 13 13 C 1.46899 * 111.00207 * 161.84376 * 12 10 2 14 14 C 1.53004 * 109.47497 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.47061 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.46802 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00014 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99843 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99902 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99987 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47580 * 59.99345 * 20 18 16 22 22 H 1.48501 * 109.47279 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.46954 * 299.99417 * 20 18 16 24 24 C 1.50707 * 109.47016 * 175.30473 * 10 2 1 25 25 N 1.34773 * 119.99675 * 285.06987 * 24 10 2 26 26 O 1.21276 * 120.00012 * 105.07245 * 24 10 2 27 27 H 1.09004 * 109.46942 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47054 * 299.99493 * 1 2 3 29 29 H 1.08995 * 109.46760 * 59.99815 * 1 2 3 30 30 H 1.08001 * 120.00256 * 0.27828 * 5 4 2 31 31 H 1.08003 * 120.00243 * 180.02562 * 6 5 4 32 32 H 1.07998 * 120.00104 * 180.11240 * 7 6 5 33 33 H 1.07992 * 119.99850 * 179.97438 * 8 7 6 34 34 H 1.07996 * 119.99738 * 180.02562 * 9 8 7 35 35 H 1.00903 * 111.00150 * 37.89457 * 12 10 2 36 36 H 1.09004 * 109.47374 * 300.00924 * 13 12 10 37 37 H 1.09007 * 109.47101 * 60.00283 * 13 12 10 38 38 H 1.08995 * 109.46992 * 300.00568 * 14 13 12 39 39 H 1.08996 * 109.46810 * 60.00481 * 14 13 12 40 40 H 1.08992 * 109.47124 * 300.00172 * 15 14 13 41 41 H 1.09004 * 109.46872 * 60.00249 * 15 14 13 42 42 H 0.96997 * 119.99306 * 180.02562 * 19 18 16 43 43 H 0.97002 * 120.00262 * 4.60179 * 25 24 10 44 44 H 0.97002 * 120.00033 * 184.60475 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.4626 -1.9090 1.6175 6 6 1.9185 -2.5571 2.7502 7 6 2.9459 -2.0079 3.4944 8 6 3.5159 -0.8096 3.1071 9 6 3.0590 -0.1608 1.9753 10 6 2.0400 -0.7212 -1.2493 11 1 1.6096 -0.2583 -2.1373 12 7 1.6452 -2.1351 -1.1939 13 6 1.7240 -2.7561 -2.5228 14 6 1.3058 -4.2246 -2.4252 15 6 1.3885 -4.8716 -3.8093 16 6 0.9760 -6.3178 -3.7132 17 1 0.6844 -6.7340 -2.7602 18 6 0.9718 -7.1099 -4.8417 19 7 1.3273 -6.6032 -6.0022 20 14 0.4597 -8.9024 -4.7228 21 1 -0.9350 -8.9865 -4.2202 22 1 0.5401 -9.5304 -6.0661 23 1 1.3667 -9.6152 -3.7876 24 6 3.5426 -0.6213 -1.3088 25 7 4.1271 0.5397 -1.6650 26 8 4.2257 -1.5855 -1.0361 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 0.6605 -2.3385 1.0356 31 1 1.4737 -3.4937 3.0524 32 1 3.3033 -2.5152 4.3784 33 1 4.3182 -0.3804 3.6888 34 1 3.5046 0.7752 1.6724 35 1 0.7214 -2.2374 -0.8012 36 1 1.0569 -2.2334 -3.2084 37 1 2.7473 -2.6933 -2.8932 38 1 1.9726 -4.7475 -1.7397 39 1 0.2825 -4.2871 -2.0552 40 1 0.7220 -4.3488 -4.4951 41 1 2.4121 -4.8091 -4.1789 42 1 1.3240 -7.1604 -6.7961 43 1 3.5844 1.3289 -1.8183 44 1 5.0905 0.5860 -1.7683 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292256583.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:24 Heat of formation + Delta-G solvation = -26.866260 kcal Electronic energy + Delta-G solvation = -23304.191554 eV Core-core repulsion = 20027.589247 eV Total energy + Delta-G solvation = -3276.602307 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.34979 -38.73725 -36.56117 -34.67534 -33.47331 -32.84588 -30.92993 -30.75137 -29.34353 -27.44020 -25.50390 -23.36146 -22.72289 -22.13941 -20.98077 -20.21315 -19.48428 -17.41298 -17.12890 -16.65614 -16.22316 -15.50526 -15.43808 -14.72925 -14.60060 -14.47055 -14.05588 -13.94128 -13.82755 -13.27011 -13.12071 -12.91816 -12.57951 -12.21712 -12.13750 -11.90872 -11.80720 -11.41871 -11.28596 -10.85605 -10.80741 -10.65759 -10.50371 -10.46853 -9.72744 -9.62718 -9.55973 -9.27652 -9.00790 -8.78509 -8.61092 -8.28040 -8.10958 -5.93581 -3.95249 1.44690 1.54068 2.81196 3.38084 3.41772 3.44803 3.46929 3.86603 4.25502 4.51690 4.59335 4.66599 4.78684 4.95749 5.06263 5.10201 5.17284 5.23262 5.32115 5.42154 5.49396 5.56066 5.67521 5.72372 5.84477 5.92156 5.96375 6.07877 6.13443 6.38594 6.53835 6.61692 6.68447 6.74620 6.80103 6.85813 7.10116 7.19938 7.24331 7.44939 7.60850 7.75346 7.91666 8.07335 8.44634 8.50798 9.11660 9.68210 11.17984 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.018124 B = 0.003628 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.518857 B = 7715.588953 C = 8352.057027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.046 4.046 3 H 0.084 0.916 4 C -0.069 4.069 5 C -0.080 4.080 6 C -0.119 4.119 7 C -0.123 4.123 8 C -0.125 4.125 9 C -0.115 4.115 10 C 0.076 3.924 11 H 0.064 0.936 12 N -0.661 5.661 13 C 0.060 3.940 14 C -0.104 4.104 15 C 0.023 3.977 16 C -0.517 4.517 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.519 3.481 25 N -0.867 5.867 26 O -0.503 6.503 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.342 0.658 36 H 0.023 0.977 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.043 0.957 40 H 0.013 0.987 41 H 0.016 0.984 42 H 0.260 0.740 43 H 0.395 0.605 44 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.433 20.061 15.264 25.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.065 4.065 3 H 0.102 0.898 4 C -0.069 4.069 5 C -0.098 4.098 6 C -0.137 4.137 7 C -0.141 4.141 8 C -0.143 4.143 9 C -0.133 4.133 10 C -0.038 4.038 11 H 0.082 0.918 12 N -0.296 5.296 13 C -0.068 4.068 14 C -0.142 4.142 15 C -0.015 4.015 16 C -0.555 4.555 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C 0.302 3.698 25 N -0.432 5.432 26 O -0.375 6.375 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.164 0.836 36 H 0.041 0.959 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.031 0.969 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.223 0.777 44 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.342 19.014 15.483 24.558 hybrid contribution -0.718 -0.198 -0.742 1.052 sum 0.624 18.816 14.741 23.911 Atomic orbital electron populations 1.21950 0.93527 1.02843 1.02519 1.20228 0.96535 0.98311 0.91463 0.89754 1.19488 0.96569 0.95693 0.95175 1.20944 0.99682 0.93877 0.95313 1.21129 0.97345 0.99663 0.95592 1.21081 0.96973 0.96044 1.00014 1.20986 0.99973 0.95997 0.97310 1.20879 0.96923 0.99885 0.95607 1.21458 0.92692 0.92059 0.97598 0.91801 1.60337 1.32697 1.10930 1.25595 1.22197 1.00867 0.96671 0.87083 1.21580 0.99448 0.91938 1.01215 1.19051 0.97119 0.94945 0.90341 1.21224 1.44574 0.95595 0.94156 0.92723 1.25026 0.95521 0.98495 0.95475 1.69965 1.48576 1.36191 0.98979 0.86658 0.79105 0.85211 0.77020 1.20296 1.21349 1.20216 1.20545 0.90664 0.82573 0.76067 1.43915 1.11667 1.12801 1.74859 1.90771 1.64816 1.36595 1.45289 0.91716 0.91564 0.91949 0.85975 0.86239 0.86614 0.86703 0.87026 0.83618 0.95923 0.91350 0.92331 0.93797 0.96910 0.96604 0.93050 0.77723 0.77095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.62 37.16 0.32 -0.88 16 2 C -0.05 -0.44 2.43 -91.77 -0.22 -0.66 16 3 H 0.08 0.62 7.95 -51.93 -0.41 0.20 16 4 C -0.07 -0.81 4.17 -104.62 -0.44 -1.24 16 5 C -0.08 -1.00 7.99 -39.58 -0.32 -1.32 16 6 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 7 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 8 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 9 C -0.11 -1.32 9.61 -39.58 -0.38 -1.70 16 10 C 0.08 0.92 2.15 -68.86 -0.15 0.77 16 11 H 0.06 0.68 7.92 -51.93 -0.41 0.27 16 12 N -0.66 -9.95 4.52 -107.94 -0.49 -10.44 16 13 C 0.06 1.10 5.42 -3.82 -0.02 1.08 16 14 C -0.10 -2.26 5.41 -26.73 -0.14 -2.41 16 15 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 16 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 17 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -27.73 13.29 55.43 0.74 -26.99 16 20 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 C 0.52 7.14 6.24 -10.98 -0.07 7.07 16 25 N -0.87 -7.74 8.87 31.22 0.28 -7.46 16 26 O -0.50 -9.66 16.97 5.56 0.09 -9.56 16 27 H 0.06 0.55 5.27 -51.93 -0.27 0.28 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.12 1.44 5.25 -52.49 -0.28 1.16 16 31 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 32 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.11 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.11 1.07 8.00 -52.49 -0.42 0.65 16 35 H 0.34 4.57 4.92 -39.29 -0.19 4.38 16 36 H 0.02 0.39 8.07 -51.93 -0.42 -0.03 16 37 H 0.07 1.40 7.48 -51.93 -0.39 1.01 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.40 2.16 8.83 -40.82 -0.36 1.79 16 44 H 0.40 3.28 8.93 -40.82 -0.36 2.92 16 LS Contribution 357.93 15.07 5.39 5.39 Total: -1.00 -35.85 357.93 -9.03 -44.88 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -6.87 Total: 5.20 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -3.16 Total: -18.27 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.53 Total: -44.89 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.85 -9.03 -44.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292256583.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.015 kcal (2) G-P(sol) polarization free energy of solvation -35.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds