Wall clock time and date at job start Tue Mar 31 2020 07:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47472 * 2 1 4 4 C 1.50701 * 109.47199 * 120.00389 * 2 1 3 5 5 C 1.38237 * 119.99935 * 44.85380 * 4 2 1 6 6 C 1.38235 * 120.00054 * 180.35252 * 5 4 2 7 7 C 1.38238 * 119.99939 * 359.87539 * 6 5 4 8 8 C 1.38240 * 119.99974 * 0.10494 * 7 6 5 9 9 C 1.38234 * 119.99804 * 359.96820 * 8 7 6 10 10 C 1.53001 * 109.47139 * 240.00107 * 2 1 3 11 11 H 1.08999 * 109.47263 * 55.30475 * 10 2 1 12 12 N 1.46896 * 109.47185 * 295.30049 * 10 2 1 13 13 C 1.46899 * 111.00207 * 161.84376 * 12 10 2 14 14 C 1.53004 * 109.47497 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.47061 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.46802 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00014 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99843 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99902 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99987 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47580 * 59.99345 * 20 18 16 22 22 H 1.48501 * 109.47279 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.46954 * 299.99417 * 20 18 16 24 24 C 1.50707 * 109.47016 * 175.30473 * 10 2 1 25 25 N 1.34773 * 119.99675 * 285.06987 * 24 10 2 26 26 O 1.21276 * 120.00012 * 105.07245 * 24 10 2 27 27 H 1.09004 * 109.46942 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47054 * 299.99493 * 1 2 3 29 29 H 1.08995 * 109.46760 * 59.99815 * 1 2 3 30 30 H 1.08001 * 120.00256 * 0.27828 * 5 4 2 31 31 H 1.08003 * 120.00243 * 180.02562 * 6 5 4 32 32 H 1.07998 * 120.00104 * 180.11240 * 7 6 5 33 33 H 1.07992 * 119.99850 * 179.97438 * 8 7 6 34 34 H 1.07996 * 119.99738 * 180.02562 * 9 8 7 35 35 H 1.00903 * 111.00150 * 37.89457 * 12 10 2 36 36 H 1.09004 * 109.47374 * 300.00924 * 13 12 10 37 37 H 1.09007 * 109.47101 * 60.00283 * 13 12 10 38 38 H 1.08995 * 109.46992 * 300.00568 * 14 13 12 39 39 H 1.08996 * 109.46810 * 60.00481 * 14 13 12 40 40 H 1.08992 * 109.47124 * 300.00172 * 15 14 13 41 41 H 1.09004 * 109.46872 * 60.00249 * 15 14 13 42 42 H 0.96997 * 119.99306 * 180.02562 * 19 18 16 43 43 H 0.97002 * 120.00262 * 4.60179 * 25 24 10 44 44 H 0.97002 * 120.00033 * 184.60475 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.4626 -1.9090 1.6175 6 6 1.9185 -2.5571 2.7502 7 6 2.9459 -2.0079 3.4944 8 6 3.5159 -0.8096 3.1071 9 6 3.0590 -0.1608 1.9753 10 6 2.0400 -0.7212 -1.2493 11 1 1.6096 -0.2583 -2.1373 12 7 1.6452 -2.1351 -1.1939 13 6 1.7240 -2.7561 -2.5228 14 6 1.3058 -4.2246 -2.4252 15 6 1.3885 -4.8716 -3.8093 16 6 0.9760 -6.3178 -3.7132 17 1 0.6844 -6.7340 -2.7602 18 6 0.9718 -7.1099 -4.8417 19 7 1.3273 -6.6032 -6.0022 20 14 0.4597 -8.9024 -4.7228 21 1 -0.9350 -8.9865 -4.2202 22 1 0.5401 -9.5304 -6.0661 23 1 1.3667 -9.6152 -3.7876 24 6 3.5426 -0.6213 -1.3088 25 7 4.1271 0.5397 -1.6650 26 8 4.2257 -1.5855 -1.0361 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 0.6605 -2.3385 1.0356 31 1 1.4737 -3.4937 3.0524 32 1 3.3033 -2.5152 4.3784 33 1 4.3182 -0.3804 3.6888 34 1 3.5046 0.7752 1.6724 35 1 0.7214 -2.2374 -0.8012 36 1 1.0569 -2.2334 -3.2084 37 1 2.7473 -2.6933 -2.8932 38 1 1.9726 -4.7475 -1.7397 39 1 0.2825 -4.2871 -2.0552 40 1 0.7220 -4.3488 -4.4951 41 1 2.4121 -4.8091 -4.1789 42 1 1.3240 -7.1604 -6.7961 43 1 3.5844 1.3289 -1.8183 44 1 5.0905 0.5860 -1.7683 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292256583.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:23 Heat of formation + Delta-G solvation = -52.049675 kcal Electronic energy + Delta-G solvation = -23305.283589 eV Core-core repulsion = 20027.589247 eV Total energy + Delta-G solvation = -3277.694342 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.30740 -39.69067 -37.74377 -36.18000 -34.80741 -34.30007 -32.53428 -31.68917 -30.25680 -28.73954 -27.10854 -24.49317 -24.08747 -23.20658 -22.09109 -21.78694 -20.49271 -18.52649 -18.28223 -18.09613 -17.50053 -16.64545 -16.55362 -16.30696 -15.98900 -15.61860 -15.18141 -15.12714 -14.83091 -14.47496 -14.17088 -14.03815 -13.92439 -13.64678 -13.41492 -13.17699 -12.90530 -12.72033 -12.60658 -12.47285 -12.46215 -12.09686 -11.66932 -11.62576 -11.46922 -11.37359 -11.09101 -10.83305 -10.55395 -10.52785 -9.67547 -9.48587 -9.27459 -8.20325 -6.31501 0.57809 0.65656 1.39016 1.42979 1.50757 1.78406 2.40736 2.56754 2.98335 3.12510 3.21042 3.76173 3.87064 3.96310 4.14285 4.21524 4.24512 4.30827 4.35700 4.39182 4.47008 4.54886 4.69789 4.72569 4.80571 4.93460 4.97855 5.04267 5.10626 5.22767 5.24598 5.27778 5.34734 5.50429 5.67845 5.74015 5.74587 5.81278 5.84698 5.93510 6.03145 6.25411 6.26458 6.44881 6.63902 6.84626 7.37473 7.52419 8.91643 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.018124 B = 0.003628 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.518857 B = 7715.588953 C = 8352.057027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.038 4.038 3 H 0.114 0.886 4 C -0.078 4.078 5 C -0.099 4.099 6 C -0.139 4.139 7 C -0.136 4.136 8 C -0.136 4.136 9 C -0.125 4.125 10 C 0.075 3.925 11 H 0.088 0.912 12 N -0.669 5.669 13 C 0.077 3.923 14 C -0.089 4.089 15 C 0.028 3.972 16 C -0.544 4.544 17 H 0.059 0.941 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.967 3.033 21 H -0.263 1.263 22 H -0.281 1.281 23 H -0.270 1.270 24 C 0.514 3.486 25 N -0.843 5.843 26 O -0.568 6.568 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.352 0.648 36 H 0.035 0.965 37 H 0.042 0.958 38 H 0.040 0.960 39 H 0.058 0.942 40 H -0.004 1.004 41 H -0.018 1.018 42 H 0.264 0.736 43 H 0.416 0.584 44 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.506 21.362 15.973 26.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.057 4.057 3 H 0.132 0.868 4 C -0.078 4.078 5 C -0.117 4.117 6 C -0.158 4.158 7 C -0.154 4.154 8 C -0.154 4.154 9 C -0.143 4.143 10 C -0.039 4.039 11 H 0.106 0.894 12 N -0.305 5.305 13 C -0.052 4.052 14 C -0.127 4.127 15 C -0.010 4.010 16 C -0.582 4.582 17 H 0.077 0.923 18 C -0.199 4.199 19 N -0.574 5.574 20 Si 0.791 3.209 21 H -0.188 1.188 22 H -0.206 1.206 23 H -0.195 1.195 24 C 0.298 3.702 25 N -0.409 5.409 26 O -0.445 6.445 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.176 0.824 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.015 0.985 41 H 0.001 0.999 42 H 0.073 0.927 43 H 0.247 0.753 44 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 0.384 20.392 16.198 26.045 hybrid contribution -0.379 -0.522 -0.962 1.158 sum 0.005 19.870 15.235 25.039 Atomic orbital electron populations 1.21951 0.92188 1.02648 1.03859 1.20293 0.97560 0.98987 0.88886 0.86803 1.19769 0.96516 0.95554 0.95950 1.21119 1.00229 0.94654 0.95662 1.21377 0.98010 1.00262 0.96102 1.21358 0.96933 0.96491 1.00640 1.21331 1.00393 0.95984 0.97684 1.21201 0.96844 1.00692 0.95604 1.21606 0.91788 0.90490 1.00009 0.89438 1.60132 1.33649 1.13341 1.23377 1.21800 0.99322 0.94809 0.89234 1.21318 0.99943 0.93920 0.97499 1.18942 0.94460 0.94775 0.92818 1.21660 1.45012 0.96939 0.94603 0.92312 1.26002 0.95213 1.03698 0.94937 1.70099 1.49316 1.38194 0.99811 0.85483 0.79287 0.78807 0.77367 1.18796 1.20620 1.19513 1.20922 0.91295 0.82732 0.75233 1.43695 1.12299 1.12252 1.72641 1.90751 1.66112 1.38986 1.48604 0.92700 0.90555 0.90276 0.85942 0.85666 0.85079 0.84832 0.85138 0.82420 0.94678 0.93963 0.94071 0.92351 0.98524 0.99922 0.92746 0.75298 0.76445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.62 71.98 0.62 -1.31 16 2 C -0.04 -0.62 2.43 -11.54 -0.03 -0.65 16 3 H 0.11 1.18 7.95 -2.39 -0.02 1.17 16 4 C -0.08 -1.70 4.17 -19.87 -0.08 -1.79 16 5 C -0.10 -2.42 7.99 22.27 0.18 -2.24 16 6 C -0.14 -3.44 10.05 22.27 0.22 -3.22 16 7 C -0.14 -3.12 10.05 22.27 0.22 -2.90 16 8 C -0.14 -2.95 10.05 22.27 0.22 -2.73 16 9 C -0.13 -2.67 9.61 22.27 0.21 -2.46 16 10 C 0.07 1.65 2.15 44.17 0.09 1.75 16 11 H 0.09 1.58 7.92 -2.39 -0.02 1.56 16 12 N -0.67 -19.72 4.52 -495.43 -2.24 -21.96 16 13 C 0.08 2.85 5.42 86.30 0.47 3.32 16 14 C -0.09 -3.95 5.41 30.60 0.17 -3.79 16 15 C 0.03 1.55 4.97 29.85 0.15 1.69 16 16 C -0.54 -32.49 9.11 25.60 0.23 -32.26 16 17 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 18 C 0.00 -0.06 5.46 84.65 0.46 0.41 16 19 N -0.93 -58.61 13.29 21.45 0.28 -58.33 16 20 Si 0.97 45.70 29.54 68.60 2.03 47.72 16 21 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 23 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 24 C 0.51 13.56 6.24 87.66 0.55 14.10 16 25 N -0.84 -13.18 8.87 -173.54 -1.54 -14.72 16 26 O -0.57 -22.06 16.97 -3.02 -0.05 -22.11 16 27 H 0.05 0.83 5.27 -2.38 -0.01 0.82 16 28 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.12 2.87 5.25 -2.91 -0.02 2.85 16 31 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 32 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.13 2.16 8.00 -2.91 -0.02 2.14 16 35 H 0.35 9.06 4.92 -89.69 -0.44 8.62 16 36 H 0.04 1.20 8.07 -2.38 -0.02 1.18 16 37 H 0.04 1.78 7.48 -2.38 -0.02 1.76 16 38 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 41 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 42 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 43 H 0.42 3.11 8.83 -92.71 -0.82 2.29 16 44 H 0.40 5.93 8.93 -92.71 -0.83 5.11 16 Total: -1.00 -80.00 357.93 1.10 -78.90 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: -1.07 Total: 22.56 kcal Atomic # 6 Polarization: -35.76 SS G_CDS: 3.69 Total: -32.07 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -3.50 Total: -95.01 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.05 Total: -22.11 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -80.00 1.10 -78.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292256583.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.852 kcal (2) G-P(sol) polarization free energy of solvation -79.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds