Wall clock time and date at job start Tue Mar 31 2020 07:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.46726 * 2 1 4 4 C 1.50695 * 109.46888 * 240.00384 * 2 1 3 5 5 C 1.38236 * 120.00182 * 299.72322 * 4 2 1 6 6 C 1.38238 * 120.00291 * 179.78961 * 5 4 2 7 7 C 1.38232 * 119.99805 * 0.44283 * 6 5 4 8 8 C 1.38236 * 120.00247 * 359.81042 * 7 6 5 9 9 C 1.38239 * 120.00004 * 359.97438 * 8 7 6 10 10 C 1.52998 * 109.47342 * 120.00303 * 2 1 3 11 11 H 1.08998 * 109.47126 * 59.99583 * 10 2 1 12 12 N 1.46904 * 109.46688 * 299.99935 * 10 2 1 13 13 C 1.46898 * 110.99486 * 155.00053 * 12 10 2 14 14 C 1.53005 * 109.47108 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47195 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.46926 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00426 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00166 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99979 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00140 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47027 * 60.00044 * 20 18 16 22 22 H 1.48509 * 109.47052 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47459 * 299.99653 * 20 18 16 24 24 C 1.50700 * 109.47092 * 180.02562 * 10 2 1 25 25 N 1.34777 * 119.99675 * 300.27576 * 24 10 2 26 26 O 1.21283 * 119.99803 * 119.99700 * 24 10 2 27 27 H 1.08994 * 109.47101 * 59.99791 * 1 2 3 28 28 H 1.09006 * 109.46726 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46966 * 299.99515 * 1 2 3 30 30 H 1.08001 * 119.99952 * 359.97438 * 5 4 2 31 31 H 1.07998 * 120.00381 * 180.27416 * 6 5 4 32 32 H 1.07997 * 120.00435 * 179.83148 * 7 6 5 33 33 H 1.08001 * 120.00588 * 180.02562 * 8 7 6 34 34 H 1.07995 * 120.00309 * 180.02562 * 9 8 7 35 35 H 1.00902 * 111.00101 * 31.04980 * 12 10 2 36 36 H 1.08998 * 109.47491 * 299.99764 * 13 12 10 37 37 H 1.09002 * 109.47489 * 60.00314 * 13 12 10 38 38 H 1.08998 * 109.47096 * 300.00428 * 14 13 12 39 39 H 1.09010 * 109.46627 * 60.00201 * 14 13 12 40 40 H 1.08998 * 109.47495 * 300.00242 * 15 14 13 41 41 H 1.08993 * 109.46877 * 60.00450 * 15 14 13 42 42 H 0.96997 * 120.00609 * 180.02562 * 19 18 16 43 43 H 0.97004 * 119.99652 * 179.72868 * 25 24 10 44 44 H 0.97000 * 119.99894 * 359.71837 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 6 1.7031 -2.0354 -1.4465 6 6 2.1602 -2.6858 -2.5774 7 6 2.9541 -2.0137 -3.4878 8 6 3.2878 -0.6901 -3.2692 9 6 2.8270 -0.0384 -2.1405 10 6 2.0401 -0.7213 1.2492 11 1 1.6767 -1.7489 1.2492 12 7 1.5504 -0.0288 2.4486 13 6 1.4877 -0.9439 3.5960 14 6 0.9751 -0.1882 4.8237 15 6 0.9091 -1.1415 6.0186 16 6 0.4037 -0.3973 7.2276 17 1 0.1548 0.6508 7.1515 18 6 0.2599 -1.0543 8.4312 19 7 0.5635 -2.3306 8.5241 20 14 -0.3659 -0.1316 9.9300 21 1 -1.7219 0.4053 9.6502 22 1 -0.4301 -1.0569 11.0898 23 1 0.5560 0.9900 10.2415 24 6 3.5471 -0.7207 1.2494 25 7 4.2213 -1.2990 0.2358 26 8 4.1531 -0.1954 2.1593 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.0862 -2.5617 -0.7331 31 1 1.8993 -3.7197 -2.7484 32 1 3.3136 -2.5225 -4.3700 33 1 3.9077 -0.1648 -3.9807 34 1 3.0872 0.9957 -1.9700 35 1 0.6527 0.3992 2.2779 36 1 0.8113 -1.7675 3.3674 37 1 2.4831 -1.3376 3.8017 38 1 1.6518 0.6352 5.0522 39 1 -0.0203 0.2058 4.6183 40 1 0.2322 -1.9647 5.7898 41 1 1.9043 -1.5358 6.2240 42 1 0.4620 -2.7929 9.3707 43 1 5.1914 -1.2952 0.2340 44 1 3.7366 -1.7191 -0.4918 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292256584.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:27 Heat of formation + Delta-G solvation = -27.236940 kcal Electronic energy + Delta-G solvation = -22957.950651 eV Core-core repulsion = 19681.332270 eV Total energy + Delta-G solvation = -3276.618381 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.72713 -38.88800 -36.68521 -34.82734 -33.41308 -32.81783 -31.31374 -31.03453 -29.45086 -27.44108 -25.44300 -23.61594 -22.89288 -22.39899 -21.02708 -20.25730 -19.63968 -17.36254 -17.28832 -16.99311 -16.25838 -15.74524 -15.32979 -14.98923 -14.67144 -14.49163 -14.24213 -13.95617 -13.89470 -13.67689 -13.34126 -13.10438 -12.75193 -12.42370 -12.13279 -12.00346 -11.79016 -11.57960 -11.37240 -11.08994 -10.93385 -10.74367 -10.50441 -10.45877 -9.74436 -9.62016 -9.55859 -9.30424 -9.27125 -9.04919 -8.97204 -8.27051 -8.13794 -5.92486 -3.94191 0.92157 1.00238 2.81326 3.37223 3.38912 3.42489 3.45722 3.53952 4.11486 4.39908 4.51546 4.60319 4.66492 4.69421 4.78186 4.80982 4.99464 5.10444 5.13731 5.26027 5.35250 5.43126 5.49023 5.61751 5.66026 5.74634 5.86752 5.87758 5.99404 6.09649 6.14124 6.26131 6.40601 6.58554 6.75149 6.82372 6.89703 7.21654 7.26508 7.48139 7.64394 7.76741 7.93209 8.08576 8.47192 8.51967 9.12811 9.69186 11.19097 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.033041 B = 0.002819 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.240525 B = 9930.138542 C =10080.847562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.052 4.052 3 H 0.094 0.906 4 C -0.079 4.079 5 C -0.124 4.124 6 C -0.117 4.117 7 C -0.124 4.124 8 C -0.117 4.117 9 C -0.108 4.108 10 C 0.078 3.922 11 H 0.068 0.932 12 N -0.668 5.668 13 C 0.062 3.938 14 C -0.105 4.105 15 C 0.023 3.977 16 C -0.517 4.517 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.518 3.482 25 N -0.864 5.864 26 O -0.514 6.514 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.344 0.656 36 H 0.023 0.977 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.044 0.956 40 H 0.013 0.987 41 H 0.016 0.984 42 H 0.260 0.740 43 H 0.394 0.606 44 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.909 0.182 -28.655 28.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.071 4.071 3 H 0.112 0.888 4 C -0.079 4.079 5 C -0.142 4.142 6 C -0.135 4.135 7 C -0.142 4.142 8 C -0.135 4.135 9 C -0.126 4.126 10 C -0.036 4.036 11 H 0.086 0.914 12 N -0.302 5.302 13 C -0.066 4.066 14 C -0.143 4.143 15 C -0.015 4.015 16 C -0.556 4.556 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.202 1.202 24 C 0.301 3.699 25 N -0.433 5.433 26 O -0.386 6.386 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.166 0.834 36 H 0.041 0.959 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.031 0.969 41 H 0.035 0.965 42 H 0.070 0.930 43 H 0.224 0.776 44 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 3.726 0.683 -27.643 27.901 hybrid contribution -0.881 -0.435 0.216 1.006 sum 2.845 0.248 -27.427 27.575 Atomic orbital electron populations 1.21926 0.93125 1.02723 1.02831 1.20278 0.96794 1.00076 0.89973 0.88794 1.19849 0.97644 0.94251 0.96202 1.21134 1.00623 0.94331 0.98146 1.21198 0.97884 1.00194 0.94239 1.21204 0.98631 0.94858 0.99518 1.21189 0.99936 0.94935 0.97468 1.21131 0.97265 1.00213 0.94020 1.21498 0.92567 0.98075 0.91510 0.91433 1.60193 1.33347 1.33966 1.02664 1.22205 1.00782 0.93306 0.90349 1.21598 0.99103 0.99623 0.93957 1.19050 0.97103 0.94160 0.91158 1.21231 1.43384 0.96354 0.94592 0.92701 1.25031 0.95716 0.94894 0.98918 1.69960 1.49012 1.09004 1.25749 0.86655 0.79383 0.79626 0.82307 1.20299 1.21358 1.20210 1.20598 0.90215 0.77575 0.81501 1.44373 1.10704 1.61781 1.26439 1.90764 1.69852 1.42919 1.35108 0.91605 0.92064 0.91264 0.85651 0.85750 0.85999 0.85902 0.85826 0.83412 0.95865 0.91111 0.92287 0.93736 0.96889 0.96540 0.93040 0.77569 0.77048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.77 37.16 0.33 -0.89 16 2 C -0.05 -0.49 2.28 -91.77 -0.21 -0.70 16 3 H 0.09 0.95 7.88 -51.93 -0.41 0.54 16 4 C -0.08 -0.64 2.57 -104.62 -0.27 -0.91 16 5 C -0.12 -0.92 7.36 -39.58 -0.29 -1.21 16 6 C -0.12 -0.75 10.04 -39.58 -0.40 -1.15 16 7 C -0.12 -0.75 10.05 -39.58 -0.40 -1.14 16 8 C -0.12 -0.75 10.05 -39.58 -0.40 -1.14 16 9 C -0.11 -0.81 8.96 -39.58 -0.35 -1.16 16 10 C 0.08 0.98 1.96 -68.86 -0.14 0.85 16 11 H 0.07 0.81 7.03 -51.93 -0.37 0.45 16 12 N -0.67 -10.41 5.84 -107.95 -0.63 -11.04 16 13 C 0.06 1.16 5.38 -3.82 -0.02 1.14 16 14 C -0.10 -2.31 5.41 -26.73 -0.14 -2.46 16 15 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 16 C -0.52 -15.27 9.11 -34.44 -0.31 -15.58 16 17 H 0.05 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.85 13.29 55.43 0.74 -27.11 16 20 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 C 0.52 7.61 7.28 -10.98 -0.08 7.53 16 25 N -0.86 -9.24 8.06 31.22 0.25 -8.98 16 26 O -0.51 -10.16 16.76 5.55 0.09 -10.07 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.48 7.41 -51.93 -0.38 0.09 16 29 H 0.07 0.59 6.21 -51.93 -0.32 0.27 16 30 H 0.13 0.88 7.10 -52.49 -0.37 0.50 16 31 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 32 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16 33 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 34 H 0.12 0.87 7.95 -52.49 -0.42 0.45 16 35 H 0.34 4.67 6.17 -39.29 -0.24 4.43 16 36 H 0.02 0.41 8.05 -51.93 -0.42 -0.01 16 37 H 0.07 1.48 7.62 -51.93 -0.40 1.08 16 38 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.04 0.93 8.14 -51.92 -0.42 0.50 16 40 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.39 3.82 8.93 -40.82 -0.36 3.46 16 44 H 0.40 3.52 4.74 -40.82 -0.19 3.32 16 LS Contribution 354.46 15.07 5.34 5.34 Total: -1.00 -34.98 354.46 -8.96 -43.94 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.81 Total: 5.41 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -2.92 Total: -14.82 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.36 Total: -47.14 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.98 -8.96 -43.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292256584.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.702 kcal (2) G-P(sol) polarization free energy of solvation -34.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds