Wall clock time and date at job start Tue Mar 31 2020 07:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.46726 * 2 1 4 4 C 1.50695 * 109.46888 * 240.00384 * 2 1 3 5 5 C 1.38236 * 120.00182 * 299.72322 * 4 2 1 6 6 C 1.38238 * 120.00291 * 179.78961 * 5 4 2 7 7 C 1.38232 * 119.99805 * 0.44283 * 6 5 4 8 8 C 1.38236 * 120.00247 * 359.81042 * 7 6 5 9 9 C 1.38239 * 120.00004 * 359.97438 * 8 7 6 10 10 C 1.52998 * 109.47342 * 120.00303 * 2 1 3 11 11 H 1.08998 * 109.47126 * 59.99583 * 10 2 1 12 12 N 1.46904 * 109.46688 * 299.99935 * 10 2 1 13 13 C 1.46898 * 110.99486 * 155.00053 * 12 10 2 14 14 C 1.53005 * 109.47108 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47195 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.46926 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00426 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00166 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99979 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00140 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47027 * 60.00044 * 20 18 16 22 22 H 1.48509 * 109.47052 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47459 * 299.99653 * 20 18 16 24 24 C 1.50700 * 109.47092 * 180.02562 * 10 2 1 25 25 N 1.34777 * 119.99675 * 300.27576 * 24 10 2 26 26 O 1.21283 * 119.99803 * 119.99700 * 24 10 2 27 27 H 1.08994 * 109.47101 * 59.99791 * 1 2 3 28 28 H 1.09006 * 109.46726 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46966 * 299.99515 * 1 2 3 30 30 H 1.08001 * 119.99952 * 359.97438 * 5 4 2 31 31 H 1.07998 * 120.00381 * 180.27416 * 6 5 4 32 32 H 1.07997 * 120.00435 * 179.83148 * 7 6 5 33 33 H 1.08001 * 120.00588 * 180.02562 * 8 7 6 34 34 H 1.07995 * 120.00309 * 180.02562 * 9 8 7 35 35 H 1.00902 * 111.00101 * 31.04980 * 12 10 2 36 36 H 1.08998 * 109.47491 * 299.99764 * 13 12 10 37 37 H 1.09002 * 109.47489 * 60.00314 * 13 12 10 38 38 H 1.08998 * 109.47096 * 300.00428 * 14 13 12 39 39 H 1.09010 * 109.46627 * 60.00201 * 14 13 12 40 40 H 1.08998 * 109.47495 * 300.00242 * 15 14 13 41 41 H 1.08993 * 109.46877 * 60.00450 * 15 14 13 42 42 H 0.96997 * 120.00609 * 180.02562 * 19 18 16 43 43 H 0.97004 * 119.99652 * 179.72868 * 25 24 10 44 44 H 0.97000 * 119.99894 * 359.71837 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 6 1.7031 -2.0354 -1.4465 6 6 2.1602 -2.6858 -2.5774 7 6 2.9541 -2.0137 -3.4878 8 6 3.2878 -0.6901 -3.2692 9 6 2.8270 -0.0384 -2.1405 10 6 2.0401 -0.7213 1.2492 11 1 1.6767 -1.7489 1.2492 12 7 1.5504 -0.0288 2.4486 13 6 1.4877 -0.9439 3.5960 14 6 0.9751 -0.1882 4.8237 15 6 0.9091 -1.1415 6.0186 16 6 0.4037 -0.3973 7.2276 17 1 0.1548 0.6508 7.1515 18 6 0.2599 -1.0543 8.4312 19 7 0.5635 -2.3306 8.5241 20 14 -0.3659 -0.1316 9.9300 21 1 -1.7219 0.4053 9.6502 22 1 -0.4301 -1.0569 11.0898 23 1 0.5560 0.9900 10.2415 24 6 3.5471 -0.7207 1.2494 25 7 4.2213 -1.2990 0.2358 26 8 4.1531 -0.1954 2.1593 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.0862 -2.5617 -0.7331 31 1 1.8993 -3.7197 -2.7484 32 1 3.3136 -2.5225 -4.3700 33 1 3.9077 -0.1648 -3.9807 34 1 3.0872 0.9957 -1.9700 35 1 0.6527 0.3992 2.2779 36 1 0.8113 -1.7675 3.3674 37 1 2.4831 -1.3376 3.8017 38 1 1.6518 0.6352 5.0522 39 1 -0.0203 0.2058 4.6183 40 1 0.2322 -1.9647 5.7898 41 1 1.9043 -1.5358 6.2240 42 1 0.4620 -2.7929 9.3707 43 1 5.1914 -1.2952 0.2340 44 1 3.7366 -1.7191 -0.4918 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292256584.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:26 Heat of formation + Delta-G solvation = -51.632671 kcal Electronic energy + Delta-G solvation = -22959.008530 eV Core-core repulsion = 19681.332270 eV Total energy + Delta-G solvation = -3277.676259 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.57387 -39.76755 -37.89987 -36.23395 -34.97226 -34.18449 -32.67261 -31.80117 -30.26397 -28.79758 -27.07799 -24.47679 -24.13097 -23.37509 -22.12080 -21.76314 -20.71658 -18.52269 -18.33798 -18.13374 -17.79036 -16.64187 -16.52739 -16.27816 -15.97799 -15.59854 -15.35956 -15.30580 -14.90312 -14.50080 -14.22055 -14.06117 -13.95056 -13.83693 -13.56802 -13.16297 -12.95563 -12.75944 -12.69714 -12.47731 -12.31596 -12.19978 -11.75185 -11.66919 -11.53522 -11.38389 -11.11627 -10.94771 -10.63719 -10.55179 -9.81870 -9.63848 -9.38010 -8.20010 -6.31402 0.38777 0.49571 1.39387 1.43645 1.51368 1.67484 2.40932 2.50897 2.83716 3.12684 3.14191 3.65410 3.78295 3.89269 4.03207 4.14425 4.17965 4.23428 4.32063 4.34643 4.43950 4.53037 4.63034 4.68035 4.70643 4.84182 4.94528 5.04436 5.07282 5.12474 5.17947 5.22156 5.27970 5.50297 5.59816 5.65841 5.69336 5.73958 5.83056 5.85898 5.94832 6.09203 6.25629 6.40091 6.53016 6.84832 7.37558 7.40330 8.92066 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.033041 B = 0.002819 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.240525 B = 9930.138542 C =10080.847562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 H 0.086 0.914 4 C -0.091 4.091 5 C -0.132 4.132 6 C -0.120 4.120 7 C -0.123 4.123 8 C -0.120 4.120 9 C -0.118 4.118 10 C 0.079 3.921 11 H 0.080 0.920 12 N -0.676 5.676 13 C 0.078 3.922 14 C -0.090 4.090 15 C 0.027 3.973 16 C -0.544 4.544 17 H 0.060 0.940 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.968 3.032 21 H -0.263 1.263 22 H -0.281 1.281 23 H -0.269 1.269 24 C 0.515 3.485 25 N -0.842 5.842 26 O -0.574 6.574 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.128 0.872 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.123 0.877 35 H 0.357 0.643 36 H 0.036 0.964 37 H 0.043 0.957 38 H 0.044 0.956 39 H 0.060 0.940 40 H -0.004 1.004 41 H -0.017 1.017 42 H 0.264 0.736 43 H 0.401 0.599 44 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.023 0.427 -30.422 30.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.061 4.061 3 H 0.104 0.896 4 C -0.091 4.091 5 C -0.151 4.151 6 C -0.138 4.138 7 C -0.141 4.141 8 C -0.137 4.137 9 C -0.136 4.136 10 C -0.035 4.035 11 H 0.097 0.903 12 N -0.312 5.312 13 C -0.051 4.051 14 C -0.128 4.128 15 C -0.010 4.010 16 C -0.582 4.582 17 H 0.078 0.922 18 C -0.200 4.200 19 N -0.575 5.575 20 Si 0.792 3.208 21 H -0.188 1.188 22 H -0.207 1.207 23 H -0.194 1.194 24 C 0.299 3.701 25 N -0.410 5.410 26 O -0.452 6.452 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.146 0.854 31 H 0.159 0.841 32 H 0.161 0.839 33 H 0.158 0.842 34 H 0.141 0.859 35 H 0.180 0.820 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.015 0.985 41 H 0.001 0.999 42 H 0.073 0.927 43 H 0.232 0.768 44 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 2.831 0.916 -29.481 29.631 hybrid contribution -0.555 -0.573 0.639 1.022 sum 2.275 0.343 -28.842 28.934 Atomic orbital electron populations 1.21924 0.91998 1.03270 1.03204 1.20166 0.97640 0.99288 0.88963 0.89584 1.19734 0.98757 0.94694 0.95945 1.21241 1.00928 0.94101 0.98797 1.21447 0.97521 1.01052 0.93757 1.21509 0.97866 0.94733 0.99971 1.21426 0.99782 0.95275 0.97259 1.21232 0.97439 1.00437 0.94517 1.21582 0.91319 0.98919 0.91666 0.90261 1.59981 1.34364 1.33779 1.03048 1.21828 0.99195 0.93621 0.90489 1.21346 0.99802 0.98156 0.93525 1.18942 0.94523 0.94526 0.93042 1.21668 1.43860 0.96876 0.95827 0.92174 1.26029 0.95651 0.95824 1.02495 1.70097 1.49790 1.10759 1.26855 0.85462 0.79280 0.78263 0.77803 1.18771 1.20654 1.19428 1.20998 0.91105 0.76842 0.81187 1.44198 1.11132 1.60137 1.25538 1.90740 1.71028 1.45904 1.37478 0.90336 0.91438 0.91723 0.85388 0.84069 0.83915 0.84221 0.85855 0.81964 0.94629 0.93802 0.93743 0.92129 0.98541 0.99851 0.92725 0.76829 0.75617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.77 71.98 0.63 -1.53 16 2 C -0.04 -0.74 2.28 -11.54 -0.03 -0.77 16 3 H 0.09 1.68 7.88 -2.38 -0.02 1.66 16 4 C -0.09 -1.32 2.57 -19.87 -0.05 -1.38 16 5 C -0.13 -1.69 7.36 22.27 0.16 -1.53 16 6 C -0.12 -1.21 10.04 22.27 0.22 -0.99 16 7 C -0.12 -1.11 10.05 22.27 0.22 -0.89 16 8 C -0.12 -1.22 10.05 22.27 0.22 -1.00 16 9 C -0.12 -1.57 8.96 22.27 0.20 -1.37 16 10 C 0.08 1.96 1.96 44.17 0.09 2.05 16 11 H 0.08 1.82 7.03 -2.39 -0.02 1.81 16 12 N -0.68 -21.09 5.84 -495.44 -2.89 -23.98 16 13 C 0.08 2.97 5.38 86.31 0.46 3.44 16 14 C -0.09 -4.07 5.41 30.60 0.17 -3.91 16 15 C 0.03 1.54 4.97 29.85 0.15 1.69 16 16 C -0.54 -32.64 9.11 25.60 0.23 -32.41 16 17 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 18 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 19 N -0.93 -58.99 13.29 21.45 0.28 -58.70 16 20 Si 0.97 45.83 29.54 68.60 2.03 47.86 16 21 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 24 C 0.51 15.20 7.28 87.66 0.64 15.84 16 25 N -0.84 -17.37 8.06 -173.53 -1.40 -18.77 16 26 O -0.57 -23.49 16.76 -3.04 -0.05 -23.54 16 27 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 0.92 7.41 -2.38 -0.02 0.90 16 29 H 0.06 1.01 6.21 -2.38 -0.01 1.00 16 30 H 0.13 1.53 7.10 -2.91 -0.02 1.51 16 31 H 0.14 0.92 8.06 -2.91 -0.02 0.90 16 32 H 0.14 0.68 8.06 -2.91 -0.02 0.66 16 33 H 0.14 0.92 8.06 -2.91 -0.02 0.89 16 34 H 0.12 1.59 7.95 -2.91 -0.02 1.57 16 35 H 0.36 9.42 6.17 -89.69 -0.55 8.87 16 36 H 0.04 1.26 8.05 -2.39 -0.02 1.24 16 37 H 0.04 1.91 7.62 -2.39 -0.02 1.90 16 38 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 40 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 41 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 42 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 43 H 0.40 7.49 8.93 -92.71 -0.83 6.67 16 44 H 0.41 6.64 4.74 -92.71 -0.44 6.20 16 Total: -1.00 -77.22 354.46 0.95 -76.28 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: -0.81 Total: 23.29 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: 3.79 Total: -22.43 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -4.01 Total: -101.45 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.05 Total: -23.54 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -77.22 0.95 -76.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292256584.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.647 kcal (2) G-P(sol) polarization free energy of solvation -77.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds