Wall clock time and date at job start Tue Mar 31 2020 09:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00049 * 2 1 4 4 N 1.46496 * 109.47230 * 124.69462 * 3 2 1 5 5 C 1.46505 * 120.00243 * 94.53171 * 4 3 2 6 6 C 1.50699 * 109.46757 * 91.00815 * 5 4 3 7 7 H 1.07995 * 120.00331 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99884 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00168 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99812 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47018 * 89.99767 * 10 8 6 12 12 H 1.48496 * 109.47073 * 209.99906 * 10 8 6 13 13 H 1.48500 * 109.47082 * 330.00284 * 10 8 6 14 14 C 1.34782 * 119.99880 * 274.53328 * 4 3 2 15 15 O 1.21624 * 119.99850 * 5.95003 * 14 4 3 16 16 C 1.47262 * 119.99755 * 185.95048 * 14 4 3 17 17 C 1.46684 * 126.94362 * 7.16911 * 16 14 4 18 18 C 1.34488 * 106.33307 * 179.97438 * 17 16 14 19 19 C 1.50701 * 125.57414 * 180.02562 * 18 17 16 20 20 N 1.36448 * 108.85711 * 359.97438 * 18 17 16 21 21 C 1.46493 * 124.85062 * 179.97438 * 20 18 17 22 22 C 1.53003 * 109.47181 * 90.02403 * 21 20 18 23 23 C 1.34661 * 110.29405 * 359.75208 * 20 18 17 24 24 C 1.50699 * 125.80036 * 180.29662 * 23 20 18 25 25 H 1.08005 * 120.00274 * 5.04530 * 1 2 3 26 26 H 1.08000 * 120.00276 * 185.03991 * 1 2 3 27 27 H 1.07999 * 119.99789 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.46729 * 244.69594 * 3 2 1 29 29 H 1.08996 * 109.46740 * 4.69048 * 3 2 1 30 30 H 1.08997 * 109.47341 * 211.01028 * 5 4 3 31 31 H 1.09002 * 109.46726 * 331.00866 * 5 4 3 32 32 H 0.96998 * 119.99663 * 180.02562 * 9 8 6 33 33 H 1.08000 * 126.83746 * 359.97438 * 17 16 14 34 34 H 1.08996 * 109.47380 * 89.96824 * 19 18 17 35 35 H 1.09005 * 109.47181 * 209.97638 * 19 18 17 36 36 H 1.09003 * 109.46530 * 329.96869 * 19 18 17 37 37 H 1.09000 * 109.46898 * 210.02245 * 21 20 18 38 38 H 1.08998 * 109.47306 * 330.02612 * 21 20 18 39 39 H 1.09001 * 109.47221 * 179.97438 * 22 21 20 40 40 H 1.08998 * 109.47543 * 299.99964 * 22 21 20 41 41 H 1.09006 * 109.47110 * 60.00031 * 22 21 20 42 42 H 1.09002 * 109.47318 * 270.15529 * 24 23 20 43 43 H 1.09002 * 109.47301 * 30.15337 * 24 23 20 44 44 H 1.08999 * 109.47359 * 150.15202 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9885 1.3349 1.1356 5 6 4.3824 0.9212 0.9561 6 6 5.2197 2.1209 0.5944 7 1 4.7596 3.0939 0.5066 8 6 6.5732 1.9759 0.3746 9 7 7.3040 3.0229 0.0595 10 14 7.3690 0.2927 0.5257 11 1 7.3337 -0.3916 -0.7918 12 1 8.7789 0.4493 0.9647 13 1 6.6267 -0.5179 1.5244 14 6 2.5572 1.7429 2.3456 15 8 1.3779 1.9827 2.5217 16 6 3.5138 1.8983 3.4543 17 6 4.9750 1.7949 3.3790 18 6 5.4340 2.0077 4.6251 19 6 6.8830 2.0000 5.0389 20 7 4.3732 2.2328 5.4533 21 6 4.4751 2.5036 6.8894 22 6 4.5970 4.0117 7.1166 23 6 3.2196 2.1752 4.7610 24 6 1.8390 2.3780 5.3299 25 1 -0.5401 0.9317 -0.0823 26 1 -0.5400 -0.9317 0.0822 27 1 1.8500 -0.9353 -0.0004 28 1 2.6255 1.4000 -0.9291 29 1 1.3581 2.1318 0.0840 30 1 4.7542 0.4848 1.8831 31 1 4.4420 0.1822 0.1570 32 1 8.2561 2.9208 -0.0955 33 1 5.5650 1.5889 2.4982 34 1 7.2934 3.0053 4.9438 35 1 6.9633 1.6713 6.0751 36 1 7.4405 1.3178 4.3971 37 1 3.5834 2.1311 7.3935 38 1 5.3558 2.0032 7.2919 39 1 4.6724 4.2133 8.1852 40 1 5.4887 4.3843 6.6125 41 1 3.7162 4.5122 6.7141 42 1 1.4400 1.4206 5.6654 43 1 1.8912 3.0656 6.1741 44 1 1.1871 2.7943 4.5620 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292506387.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:15 Heat of formation + Delta-G solvation = 46.559998 kcal Electronic energy + Delta-G solvation = -24289.653146 eV Core-core repulsion = 21016.234841 eV Total energy + Delta-G solvation = -3273.418306 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 14.22 seconds Orbital eigenvalues (eV) -40.95440 -38.58754 -35.38278 -34.14105 -33.20019 -32.11469 -32.10756 -29.18572 -28.69884 -27.97992 -25.94996 -23.89090 -23.26497 -22.40870 -20.74687 -19.66581 -18.92093 -17.26094 -16.94457 -16.31203 -15.43877 -15.34696 -14.97508 -14.49426 -14.28689 -13.89951 -13.64540 -13.37416 -12.96491 -12.89906 -12.82649 -12.65742 -12.53402 -12.45558 -12.18957 -12.04159 -11.88876 -11.42721 -11.28338 -11.21110 -11.04229 -10.90811 -10.80322 -10.58728 -10.24122 -9.99109 -9.56408 -9.16241 -8.75685 -8.67435 -7.85053 -7.61886 -7.23561 -6.18173 -4.15060 2.41961 2.64334 3.14885 3.19941 3.27016 3.27859 3.29768 4.24551 4.27783 4.42931 4.72647 5.00603 5.07157 5.12531 5.22066 5.40185 5.41929 5.55241 5.55748 5.60002 5.62319 5.67790 5.84448 5.92733 5.96346 6.03037 6.14060 6.23000 6.26875 6.38296 6.41400 6.48069 6.58013 6.74675 6.87245 6.98414 7.09774 7.18207 7.49062 7.57214 7.65689 7.83692 7.91899 8.29636 8.56446 8.92029 9.23658 9.40073 10.94241 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.010680 B = 0.008333 C = 0.005134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.008654 B = 3359.410718 C = 5452.673444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.159 4.159 3 C 0.148 3.852 4 N -0.585 5.585 5 C 0.192 3.808 6 C -0.525 4.525 7 H 0.080 0.920 8 C 0.075 3.925 9 N -0.887 5.887 10 Si 0.856 3.144 11 H -0.272 1.272 12 H -0.281 1.281 13 H -0.259 1.259 14 C 0.595 3.405 15 O -0.578 6.578 16 C -0.222 4.222 17 C -0.142 4.142 18 C -0.027 4.027 19 C -0.074 4.074 20 N -0.441 5.441 21 C 0.098 3.902 22 C -0.169 4.169 23 C 0.085 3.915 24 C -0.086 4.086 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.024 0.976 32 H 0.266 0.734 33 H 0.197 0.803 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.470 -3.544 11.126 12.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.178 4.178 3 C 0.025 3.975 4 N -0.314 5.314 5 C 0.071 3.929 6 C -0.564 4.564 7 H 0.098 0.902 8 C -0.128 4.128 9 N -0.524 5.524 10 Si 0.682 3.318 11 H -0.198 1.198 12 H -0.206 1.206 13 H -0.183 1.183 14 C 0.387 3.613 15 O -0.461 6.461 16 C -0.233 4.233 17 C -0.164 4.164 18 C -0.132 4.132 19 C -0.131 4.131 20 N -0.120 5.120 21 C -0.024 4.024 22 C -0.227 4.227 23 C -0.031 4.031 24 C -0.144 4.144 25 H 0.113 0.887 26 H 0.108 0.892 27 H 0.121 0.879 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.213 0.787 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.777 -3.297 11.489 12.872 hybrid contribution 0.778 -0.775 -0.025 1.099 sum -3.999 -4.072 11.464 12.806 Atomic orbital electron populations 1.23676 0.95835 1.01248 1.01555 1.23391 0.96194 0.99271 0.98993 1.20341 0.92438 0.94598 0.90088 1.47587 1.11491 1.64495 1.07815 1.20390 0.78309 0.96163 0.98061 1.21383 0.92641 0.95469 1.46868 0.90152 1.24862 0.97033 0.96212 0.94719 1.69886 1.06806 1.29176 1.46560 0.87167 0.79607 0.85423 0.79635 1.19775 1.20650 1.18284 1.17337 0.86379 0.75619 0.81958 1.90601 1.17657 1.54261 1.83600 1.20083 0.94037 1.16957 0.92181 1.23796 0.93359 1.02114 0.97103 1.20292 0.89221 1.12886 0.90809 1.20194 0.89966 1.02609 1.00374 1.43515 1.05433 1.55891 1.07200 1.21707 1.03458 0.97257 0.79994 1.22163 1.03422 0.95176 1.01941 1.20068 0.87706 1.04182 0.91177 1.20464 0.91208 1.01502 1.01182 0.88688 0.89187 0.87890 0.89627 0.90712 0.92887 0.95802 0.92405 0.78712 0.91532 0.92867 0.90596 0.89821 0.89605 0.91272 0.91677 0.91883 0.91583 0.92763 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.82 14.31 29.01 0.42 -2.40 16 2 C -0.16 -2.71 9.81 -36.03 -0.35 -3.06 16 3 C 0.15 2.88 5.75 -5.20 -0.03 2.85 16 4 N -0.59 -13.04 2.45 -177.77 -0.44 -13.48 16 5 C 0.19 4.46 3.73 -5.19 -0.02 4.44 16 6 C -0.53 -13.89 7.74 -34.44 -0.27 -14.16 16 7 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 8 C 0.08 2.00 5.00 -17.82 -0.09 1.91 16 9 N -0.89 -25.35 13.96 55.43 0.77 -24.58 16 10 Si 0.86 19.47 26.76 -169.99 -4.55 14.92 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.26 -5.58 6.54 56.52 0.37 -5.21 16 14 C 0.60 13.72 7.60 -12.59 -0.10 13.63 16 15 O -0.58 -13.60 14.51 5.26 0.08 -13.52 16 16 C -0.22 -4.89 6.05 -103.35 -0.63 -5.52 16 17 C -0.14 -3.12 8.17 -37.50 -0.31 -3.43 16 18 C -0.03 -0.50 6.85 -81.86 -0.56 -1.06 16 19 C -0.07 -1.12 10.06 36.01 0.36 -0.76 16 20 N -0.44 -7.30 2.69 -107.97 -0.29 -7.59 16 21 C 0.10 1.13 6.08 -4.04 -0.02 1.10 16 22 C -0.17 -1.77 10.24 37.16 0.38 -1.39 16 23 C 0.08 1.58 6.89 -81.88 -0.56 1.01 16 24 C -0.09 -1.33 9.33 36.01 0.34 -1.00 16 25 H 0.09 1.42 7.86 -52.48 -0.41 1.01 16 26 H 0.09 1.18 8.06 -52.49 -0.42 0.76 16 27 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 28 H 0.09 1.61 8.04 -51.93 -0.42 1.19 16 29 H 0.07 1.47 7.31 -51.93 -0.38 1.09 16 30 H 0.05 1.25 3.95 -51.93 -0.20 1.05 16 31 H 0.02 0.54 7.49 -51.93 -0.39 0.15 16 32 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.20 4.69 2.39 -52.49 -0.13 4.56 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.64 6.94 -51.93 -0.36 0.28 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.08 0.83 7.51 -51.93 -0.39 0.44 16 38 H 0.09 0.85 6.90 -51.93 -0.36 0.49 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.05 0.68 7.56 -51.93 -0.39 0.29 16 44 H 0.10 1.75 6.35 -51.93 -0.33 1.42 16 LS Contribution 352.34 15.07 5.31 5.31 Total: -1.00 -31.06 352.34 -7.29 -38.34 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -6.73 Total: 8.43 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -1.44 Total: -7.82 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 0.05 Total: -45.65 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.08 Total: -13.52 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.55 Total: 14.92 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.06 -7.29 -38.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292506387.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.904 kcal (2) G-P(sol) polarization free energy of solvation -31.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.23 seconds