Wall clock time and date at job start Tue Mar 31 2020 09:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00049 * 2 1 4 4 N 1.46496 * 109.47230 * 124.69462 * 3 2 1 5 5 C 1.46505 * 120.00243 * 94.53171 * 4 3 2 6 6 C 1.50699 * 109.46757 * 91.00815 * 5 4 3 7 7 H 1.07995 * 120.00331 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99884 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00168 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99812 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47018 * 89.99767 * 10 8 6 12 12 H 1.48496 * 109.47073 * 209.99906 * 10 8 6 13 13 H 1.48500 * 109.47082 * 330.00284 * 10 8 6 14 14 C 1.34782 * 119.99880 * 274.53328 * 4 3 2 15 15 O 1.21624 * 119.99850 * 5.95003 * 14 4 3 16 16 C 1.47262 * 119.99755 * 185.95048 * 14 4 3 17 17 C 1.46684 * 126.94362 * 7.16911 * 16 14 4 18 18 C 1.34488 * 106.33307 * 179.97438 * 17 16 14 19 19 C 1.50701 * 125.57414 * 180.02562 * 18 17 16 20 20 N 1.36448 * 108.85711 * 359.97438 * 18 17 16 21 21 C 1.46493 * 124.85062 * 179.97438 * 20 18 17 22 22 C 1.53003 * 109.47181 * 90.02403 * 21 20 18 23 23 C 1.34661 * 110.29405 * 359.75208 * 20 18 17 24 24 C 1.50699 * 125.80036 * 180.29662 * 23 20 18 25 25 H 1.08005 * 120.00274 * 5.04530 * 1 2 3 26 26 H 1.08000 * 120.00276 * 185.03991 * 1 2 3 27 27 H 1.07999 * 119.99789 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.46729 * 244.69594 * 3 2 1 29 29 H 1.08996 * 109.46740 * 4.69048 * 3 2 1 30 30 H 1.08997 * 109.47341 * 211.01028 * 5 4 3 31 31 H 1.09002 * 109.46726 * 331.00866 * 5 4 3 32 32 H 0.96998 * 119.99663 * 180.02562 * 9 8 6 33 33 H 1.08000 * 126.83746 * 359.97438 * 17 16 14 34 34 H 1.08996 * 109.47380 * 89.96824 * 19 18 17 35 35 H 1.09005 * 109.47181 * 209.97638 * 19 18 17 36 36 H 1.09003 * 109.46530 * 329.96869 * 19 18 17 37 37 H 1.09000 * 109.46898 * 210.02245 * 21 20 18 38 38 H 1.08998 * 109.47306 * 330.02612 * 21 20 18 39 39 H 1.09001 * 109.47221 * 179.97438 * 22 21 20 40 40 H 1.08998 * 109.47543 * 299.99964 * 22 21 20 41 41 H 1.09006 * 109.47110 * 60.00031 * 22 21 20 42 42 H 1.09002 * 109.47318 * 270.15529 * 24 23 20 43 43 H 1.09002 * 109.47301 * 30.15337 * 24 23 20 44 44 H 1.08999 * 109.47359 * 150.15202 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9885 1.3349 1.1356 5 6 4.3824 0.9212 0.9561 6 6 5.2197 2.1209 0.5944 7 1 4.7596 3.0939 0.5066 8 6 6.5732 1.9759 0.3746 9 7 7.3040 3.0229 0.0595 10 14 7.3690 0.2927 0.5257 11 1 7.3337 -0.3916 -0.7918 12 1 8.7789 0.4493 0.9647 13 1 6.6267 -0.5179 1.5244 14 6 2.5572 1.7429 2.3456 15 8 1.3779 1.9827 2.5217 16 6 3.5138 1.8983 3.4543 17 6 4.9750 1.7949 3.3790 18 6 5.4340 2.0077 4.6251 19 6 6.8830 2.0000 5.0389 20 7 4.3732 2.2328 5.4533 21 6 4.4751 2.5036 6.8894 22 6 4.5970 4.0117 7.1166 23 6 3.2196 2.1752 4.7610 24 6 1.8390 2.3780 5.3299 25 1 -0.5401 0.9317 -0.0823 26 1 -0.5400 -0.9317 0.0822 27 1 1.8500 -0.9353 -0.0004 28 1 2.6255 1.4000 -0.9291 29 1 1.3581 2.1318 0.0840 30 1 4.7542 0.4848 1.8831 31 1 4.4420 0.1822 0.1570 32 1 8.2561 2.9208 -0.0955 33 1 5.5650 1.5889 2.4982 34 1 7.2934 3.0053 4.9438 35 1 6.9633 1.6713 6.0751 36 1 7.4405 1.3178 4.3971 37 1 3.5834 2.1311 7.3935 38 1 5.3558 2.0032 7.2919 39 1 4.6724 4.2133 8.1852 40 1 5.4887 4.3843 6.6125 41 1 3.7162 4.5122 6.7141 42 1 1.4400 1.4206 5.6654 43 1 1.8912 3.0656 6.1741 44 1 1.1871 2.7943 4.5620 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292506387.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:13 Heat of formation + Delta-G solvation = 28.892764 kcal Electronic energy + Delta-G solvation = -24290.419255 eV Core-core repulsion = 21016.234841 eV Total energy + Delta-G solvation = -3274.184414 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.37221 -40.25421 -37.11037 -35.54795 -34.62302 -33.87512 -33.46558 -30.54178 -29.96660 -29.75712 -27.42834 -25.38836 -24.48277 -24.16167 -22.18204 -21.05820 -20.37262 -19.00113 -18.81132 -17.78351 -16.97902 -16.78995 -16.39749 -16.13333 -15.68836 -15.33511 -15.16814 -14.82450 -14.61206 -14.22782 -14.18955 -14.09309 -13.93951 -13.69396 -13.50621 -13.19529 -13.13731 -13.09234 -12.67872 -12.58691 -12.39659 -12.27015 -12.14648 -12.04616 -11.94825 -11.73999 -11.60505 -10.79714 -10.69753 -10.19611 -9.47604 -9.23626 -8.72194 -8.26450 -6.28451 0.90547 1.31858 1.37752 1.40392 1.50252 1.63362 2.01952 2.34015 2.62049 2.75330 3.07089 3.84441 3.87401 4.00140 4.07005 4.14923 4.16439 4.28613 4.36461 4.40703 4.53042 4.59819 4.70116 4.73091 4.75446 4.77209 4.81107 4.81789 4.91829 5.04354 5.06463 5.09703 5.13585 5.26837 5.31659 5.45183 5.57524 5.68525 5.78778 5.92949 6.11175 6.26040 6.34446 6.58483 6.68212 6.79394 7.28194 7.52606 8.90081 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.010680 B = 0.008333 C = 0.005134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.008654 B = 3359.410718 C = 5452.673444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.180 4.180 3 C 0.145 3.855 4 N -0.593 5.593 5 C 0.205 3.795 6 C -0.519 4.519 7 H 0.025 0.975 8 C 0.028 3.972 9 N -0.936 5.936 10 Si 0.922 3.078 11 H -0.265 1.265 12 H -0.274 1.274 13 H -0.240 1.240 14 C 0.585 3.415 15 O -0.594 6.594 16 C -0.270 4.270 17 C -0.189 4.189 18 C -0.017 4.017 19 C -0.073 4.073 20 N -0.431 5.431 21 C 0.087 3.913 22 C -0.165 4.165 23 C 0.093 3.907 24 C -0.080 4.080 25 H 0.095 0.905 26 H 0.119 0.881 27 H 0.112 0.888 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.035 0.965 32 H 0.269 0.731 33 H 0.172 0.828 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.048 0.952 41 H 0.049 0.951 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.578 -5.411 14.049 15.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.199 4.199 3 C 0.023 3.977 4 N -0.322 5.322 5 C 0.083 3.917 6 C -0.557 4.557 7 H 0.043 0.957 8 C -0.171 4.171 9 N -0.575 5.575 10 Si 0.744 3.256 11 H -0.190 1.190 12 H -0.199 1.199 13 H -0.164 1.164 14 C 0.377 3.623 15 O -0.478 6.478 16 C -0.280 4.280 17 C -0.211 4.211 18 C -0.124 4.124 19 C -0.131 4.131 20 N -0.108 5.108 21 C -0.032 4.032 22 C -0.223 4.223 23 C -0.025 4.025 24 C -0.137 4.137 25 H 0.113 0.887 26 H 0.137 0.863 27 H 0.130 0.870 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.189 0.811 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.901 -5.165 14.427 16.088 hybrid contribution 0.733 -0.055 -0.859 1.130 sum -4.169 -5.219 13.568 15.123 Atomic orbital electron populations 1.23919 0.95190 1.02586 0.98408 1.23229 0.96797 0.98025 1.01843 1.20424 0.92098 0.96063 0.89132 1.47687 1.11431 1.64524 1.08514 1.20172 0.78507 0.94750 0.98256 1.21292 0.93321 0.94316 1.46817 0.95651 1.25611 0.97247 1.00296 0.93962 1.70037 1.07281 1.31897 1.48291 0.86109 0.78766 0.80405 0.80305 1.18964 1.19934 1.16360 1.17694 0.86648 0.75392 0.82521 1.90558 1.18133 1.55172 1.83987 1.20268 0.94045 1.20166 0.93560 1.23583 0.93655 1.05701 0.98167 1.20650 0.91116 1.10471 0.90212 1.20292 0.87388 1.02780 1.02600 1.43818 1.04071 1.53869 1.09090 1.22204 1.05975 0.98331 0.76724 1.22147 1.02044 0.94089 1.04009 1.20472 0.89573 1.02050 0.90447 1.20469 0.88764 1.03079 1.01390 0.88709 0.86314 0.87042 0.89988 0.91748 0.92484 0.94707 0.92206 0.81149 0.91399 0.88946 0.91085 0.87290 0.87143 0.87741 0.93241 0.93159 0.89883 0.89313 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.74 14.31 67.78 0.97 -3.77 16 2 C -0.18 -6.07 9.81 25.65 0.25 -5.82 16 3 C 0.15 5.88 5.75 85.63 0.49 6.37 16 4 N -0.59 -27.59 2.45 -834.58 -2.05 -29.63 16 5 C 0.20 9.84 3.73 85.63 0.32 10.16 16 6 C -0.52 -29.00 7.74 25.60 0.20 -28.80 16 7 H 0.03 1.65 8.06 -2.91 -0.02 1.63 16 8 C 0.03 1.55 5.00 84.66 0.42 1.97 16 9 N -0.94 -55.77 13.96 21.45 0.30 -55.47 16 10 Si 0.92 40.56 26.76 68.60 1.84 42.40 16 11 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 12 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 13 H -0.24 -9.79 6.54 99.48 0.65 -9.14 16 14 C 0.58 27.98 7.60 86.61 0.66 28.64 16 15 O -0.59 -28.78 14.51 -4.11 -0.06 -28.84 16 16 C -0.27 -12.19 6.05 -19.04 -0.12 -12.30 16 17 C -0.19 -8.52 8.17 23.62 0.19 -8.32 16 18 C -0.02 -0.63 6.85 40.98 0.28 -0.34 16 19 C -0.07 -2.06 10.06 71.24 0.72 -1.34 16 20 N -0.43 -13.33 2.69 -495.50 -1.33 -14.66 16 21 C 0.09 1.64 6.08 86.38 0.53 2.17 16 22 C -0.17 -2.88 10.24 71.98 0.74 -2.14 16 23 C 0.09 3.38 6.89 41.78 0.29 3.67 16 24 C -0.08 -2.32 9.33 71.24 0.66 -1.65 16 25 H 0.09 2.75 7.86 -2.91 -0.02 2.72 16 26 H 0.12 2.78 8.06 -2.91 -0.02 2.76 16 27 H 0.11 3.56 8.06 -2.91 -0.02 3.53 16 28 H 0.08 3.26 8.04 -2.39 -0.02 3.24 16 29 H 0.06 2.67 7.31 -2.39 -0.02 2.65 16 30 H 0.06 2.75 3.95 -2.39 -0.01 2.74 16 31 H 0.03 1.58 7.49 -2.39 -0.02 1.56 16 32 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 33 H 0.17 8.49 2.39 -2.91 -0.01 8.48 16 34 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.09 1.84 6.94 -2.38 -0.02 1.82 16 36 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.11 1.57 7.51 -2.39 -0.02 1.56 16 38 H 0.11 1.60 6.90 -2.39 -0.02 1.58 16 39 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.05 1.01 8.11 -2.38 -0.02 0.99 16 42 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.09 1.93 7.56 -2.39 -0.02 1.91 16 44 H 0.07 2.61 6.35 -2.39 -0.02 2.60 16 Total: -1.00 -72.61 352.34 6.23 -66.37 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: 0.93 Total: 31.35 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 6.60 Total: -11.53 kcal Atomic # 7 Polarization: -96.68 SS G_CDS: -3.08 Total: -99.75 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.06 Total: -28.84 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 1.84 Total: 42.40 kcal Total: -72.61 6.23 -66.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292506387.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.267 kcal (2) G-P(sol) polarization free energy of solvation -72.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds