Wall clock time and date at job start Tue Mar 31 2020 08:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46715 * 2 1 4 4 C 1.52992 * 109.47205 * 120.00082 * 2 1 3 5 5 N 1.46504 * 109.47058 * 295.00092 * 4 2 1 6 6 C 1.34779 * 119.99927 * 180.02562 * 5 4 2 7 7 O 1.21547 * 119.99890 * 359.71843 * 6 5 4 8 8 C 1.47890 * 120.00005 * 180.02562 * 6 5 4 9 9 C 1.39915 * 120.02237 * 359.71946 * 8 6 5 10 10 C 1.38335 * 120.35722 * 179.72332 * 9 8 6 11 11 C 1.37752 * 120.40963 * 0.55229 * 10 9 8 12 12 C 1.40751 * 120.03743 * 359.72619 * 11 10 9 13 13 C 1.41443 * 120.17465 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99878 * 150.38137 * 13 12 11 15 15 C 1.39935 * 120.00250 * 330.38952 * 13 12 11 16 16 N 1.30827 * 120.00294 * 161.91366 * 15 13 12 17 17 Si 1.86799 * 119.99926 * 341.91397 * 15 13 12 18 18 H 1.48492 * 109.47289 * 95.30178 * 17 15 13 19 19 H 1.48499 * 109.47259 * 215.30390 * 17 15 13 20 20 H 1.48506 * 109.47169 * 335.29813 * 17 15 13 21 21 C 1.38990 * 120.02571 * 179.97438 * 8 6 5 22 22 C 1.52999 * 109.47040 * 240.00184 * 2 1 3 23 23 N 1.46901 * 109.47024 * 176.20924 * 22 2 1 24 24 C 1.46903 * 111.00204 * 164.82882 * 23 22 2 25 25 C 1.46898 * 111.00376 * 288.78310 * 23 22 2 26 26 H 1.09000 * 109.47226 * 296.52277 * 1 2 3 27 27 H 1.08996 * 109.47268 * 56.52732 * 1 2 3 28 28 H 1.08996 * 109.46533 * 176.52017 * 1 2 3 29 29 H 1.09002 * 109.47225 * 175.00346 * 4 2 1 30 30 H 1.08994 * 109.47611 * 54.99835 * 4 2 1 31 31 H 0.96995 * 119.99888 * 0.02562 * 5 4 2 32 32 H 1.08002 * 119.82622 * 359.97438 * 9 8 6 33 33 H 1.07997 * 119.79484 * 180.28237 * 10 9 8 34 34 H 1.08000 * 119.98312 * 179.70118 * 11 10 9 35 35 H 0.96999 * 120.00508 * 179.97438 * 16 15 13 36 36 H 1.08003 * 120.20228 * 359.97438 * 21 8 6 37 37 H 1.08995 * 109.47161 * 296.21203 * 22 2 1 38 38 H 1.08996 * 109.47490 * 56.21363 * 22 2 1 39 39 H 1.08997 * 109.46758 * 59.99657 * 24 23 22 40 40 H 1.09000 * 109.47252 * 180.02562 * 24 23 22 41 41 H 1.09000 * 109.47097 * 300.00308 * 24 23 22 42 42 H 1.09006 * 109.47024 * 60.45855 * 25 23 22 43 43 H 1.08996 * 109.47440 * 180.45419 * 25 23 22 44 44 H 1.09000 * 109.47184 * 300.45848 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6525 0.0354 2.4423 6 6 1.9965 -0.4131 3.6659 7 8 2.6239 -1.4479 3.7796 8 6 1.6047 0.3504 4.8704 9 6 0.8821 1.5413 4.7400 10 6 0.5071 2.2580 5.8623 11 6 0.8504 1.8138 7.1202 12 6 1.5823 0.6209 7.2707 13 6 1.9359 0.1618 8.5610 14 1 2.0469 -0.8964 8.7459 15 6 2.1417 1.0787 9.5979 16 7 2.1169 0.6755 10.8422 17 14 2.4519 2.8785 9.2053 18 1 1.1728 3.6291 9.2807 19 1 3.4142 3.4405 10.1868 20 1 3.0153 2.9966 7.8364 21 6 1.9588 -0.1119 6.1324 22 6 2.0400 -0.7212 -1.2493 23 7 3.5062 -0.6424 -1.2959 24 6 4.0549 -1.6073 -2.2582 25 6 3.9505 0.7226 -1.6077 26 1 -0.3634 0.4589 0.9195 27 1 -0.3633 0.5668 -0.8572 28 1 -0.3632 -1.0258 -0.0624 29 1 3.1264 -0.7994 1.2055 30 1 1.6055 -1.7197 1.2952 31 1 1.1483 0.8590 2.3517 32 1 0.6119 1.9010 3.7581 33 1 -0.0545 3.1738 5.7513 34 1 0.5583 2.3813 7.9914 35 1 2.2600 1.3109 11.5610 36 1 2.5198 -1.0287 6.2376 37 1 1.7332 -1.7666 -1.2160 38 1 1.6224 -0.2481 -2.1379 39 1 3.6616 -1.3930 -3.2519 40 1 5.1420 -1.5281 -2.2724 41 1 3.7684 -2.6169 -1.9640 42 1 3.5948 1.4056 -0.8361 43 1 5.0394 0.7510 -1.6440 44 1 3.5467 1.0243 -2.5742 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294248150.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:27 Heat of formation + Delta-G solvation = -24.371734 kcal Electronic energy + Delta-G solvation = -22606.290980 eV Core-core repulsion = 19329.796844 eV Total energy + Delta-G solvation = -3276.494136 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -39.51657 -38.32743 -37.22168 -35.35083 -33.69079 -32.59644 -30.55657 -29.96681 -27.87772 -27.23264 -26.34399 -25.03723 -22.93192 -22.21326 -20.70542 -20.29348 -19.79329 -17.83209 -16.44690 -16.20794 -15.82775 -15.60839 -15.12468 -14.94502 -14.71963 -14.62608 -13.98041 -13.64730 -13.40873 -13.10928 -12.89929 -12.71662 -12.68511 -12.62471 -12.32967 -12.03320 -11.96671 -11.92441 -11.61077 -11.23279 -11.15941 -11.01040 -10.78391 -10.72972 -10.51233 -9.98010 -9.69163 -9.38313 -9.09401 -8.74132 -8.56578 -7.83342 -7.73028 -6.98633 -4.53152 1.97186 2.54037 3.06777 3.19002 3.27758 3.62334 3.65464 3.69844 3.95029 4.51939 4.56056 4.68215 4.84545 4.97161 5.05201 5.16255 5.22702 5.29478 5.34980 5.39189 5.47000 5.48100 5.60708 5.65381 5.70547 5.72240 5.88969 5.92309 6.05241 6.12982 6.21298 6.42150 6.69271 6.70896 6.72983 6.73880 6.83425 7.01133 7.24286 7.44175 7.52687 7.77837 7.86321 8.07908 8.30487 8.55859 8.72803 8.81898 10.03624 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.029026 B = 0.003054 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.428629 B = 9165.651460 C = 9320.344730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.100 4.100 3 H 0.077 0.923 4 C 0.132 3.868 5 N -0.734 5.734 6 C 0.562 3.438 7 O -0.548 6.548 8 C -0.107 4.107 9 C -0.217 4.217 10 C -0.083 4.083 11 C -0.223 4.223 12 C 0.082 3.918 13 C -0.442 4.442 14 H 0.094 0.906 15 C 0.083 3.917 16 N -0.805 5.805 17 Si 0.911 3.089 18 H -0.270 1.270 19 H -0.290 1.290 20 H -0.243 1.243 21 C -0.136 4.136 22 C 0.063 3.937 23 N -0.546 5.546 24 C 0.025 3.975 25 C 0.022 3.978 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.397 0.603 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.286 0.714 36 H 0.115 0.885 37 H 0.077 0.923 38 H 0.039 0.961 39 H 0.023 0.977 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.047 2.594 -22.143 22.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.119 4.119 3 H 0.095 0.905 4 C 0.008 3.992 5 N -0.388 5.388 6 C 0.352 3.648 7 O -0.426 6.426 8 C -0.110 4.110 9 C -0.237 4.237 10 C -0.102 4.102 11 C -0.243 4.243 12 C 0.079 3.921 13 C -0.470 4.470 14 H 0.112 0.888 15 C -0.136 4.136 16 N -0.428 5.428 17 Si 0.738 3.262 18 H -0.196 1.196 19 H -0.217 1.217 20 H -0.167 1.167 21 C -0.156 4.156 22 C -0.066 4.066 23 N -0.270 5.270 24 C -0.123 4.123 25 C -0.126 4.126 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.233 0.767 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.133 0.867 37 H 0.096 0.904 38 H 0.057 0.943 39 H 0.041 0.959 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -0.368 1.693 -21.317 21.387 hybrid contribution -0.478 1.464 -0.841 1.754 sum -0.846 3.157 -22.158 22.398 Atomic orbital electron populations 1.21851 0.94496 1.02355 1.02060 1.21387 0.95763 1.00278 0.94481 0.90506 1.21239 1.01045 0.94518 0.82376 1.45986 1.58935 1.28077 1.05775 1.18746 0.78191 0.84599 0.83314 1.90697 1.40476 1.24544 1.86926 1.19467 1.02641 0.96498 0.92428 1.20374 1.08606 0.97900 0.96780 1.20504 0.98839 0.98002 0.92823 1.21166 1.05996 1.01072 0.96060 1.17704 0.90113 0.91130 0.93147 1.19525 1.39790 0.96634 0.91100 0.88847 1.26168 0.91520 1.01800 0.94121 1.69690 1.34458 1.38427 1.00266 0.86307 0.78669 0.81106 0.80150 1.19591 1.21714 1.16665 1.21276 1.02473 1.01663 0.90221 1.22140 0.87008 1.01112 0.96328 1.61926 1.09340 1.05950 1.49775 1.22383 1.00431 0.96470 0.93031 1.22442 1.01072 0.89785 0.99320 0.91906 0.92662 0.92279 0.90299 0.92235 0.76729 0.88706 0.88354 0.87931 0.90340 0.86672 0.90440 0.94311 0.95868 0.91302 0.91211 0.91032 0.91363 0.95801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.11 37.16 0.34 -0.91 16 2 C -0.10 -0.93 2.41 -90.62 -0.22 -1.15 16 3 H 0.08 0.71 6.60 -51.93 -0.34 0.36 16 4 C 0.13 1.73 5.00 -4.04 -0.02 1.71 16 5 N -0.73 -11.18 5.20 -61.24 -0.32 -11.50 16 6 C 0.56 11.36 7.77 -12.31 -0.10 11.27 16 7 O -0.55 -12.83 16.33 5.32 0.09 -12.74 16 8 C -0.11 -2.33 5.87 -105.04 -0.62 -2.95 16 9 C -0.22 -4.23 9.55 -38.92 -0.37 -4.60 16 10 C -0.08 -1.71 10.01 -39.72 -0.40 -2.11 16 11 C -0.22 -5.26 7.16 -38.81 -0.28 -5.54 16 12 C 0.08 2.09 5.11 -106.87 -0.55 1.55 16 13 C -0.44 -12.03 9.57 -37.73 -0.36 -12.39 16 14 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 15 C 0.08 2.17 5.41 -17.34 -0.09 2.08 16 16 N -0.80 -21.38 13.93 55.55 0.77 -20.61 16 17 Si 0.91 20.54 24.50 -169.99 -4.17 16.37 16 18 H -0.27 -5.82 6.70 56.52 0.38 -5.45 16 19 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 20 H -0.24 -5.63 6.85 56.52 0.39 -5.24 16 21 C -0.14 -3.34 9.34 -38.45 -0.36 -3.70 16 22 C 0.06 0.53 4.37 -3.82 -0.02 0.51 16 23 N -0.55 -5.07 4.30 -251.26 -1.08 -6.15 16 24 C 0.03 0.19 9.54 60.07 0.57 0.76 16 25 C 0.02 0.18 9.37 60.06 0.56 0.74 16 26 H 0.06 0.57 7.10 -51.93 -0.37 0.20 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 1.18 7.58 -51.93 -0.39 0.79 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.40 5.16 5.67 -40.82 -0.23 4.93 16 32 H 0.09 1.49 6.38 -52.49 -0.33 1.15 16 33 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 34 H 0.10 2.39 4.67 -52.49 -0.25 2.14 16 35 H 0.29 6.85 8.30 -40.82 -0.34 6.52 16 36 H 0.12 2.89 7.64 -52.48 -0.40 2.49 16 37 H 0.08 0.64 7.97 -51.93 -0.41 0.23 16 38 H 0.04 0.29 8.04 -51.93 -0.42 -0.12 16 39 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 40 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 41 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 42 H 0.07 0.60 6.62 -51.93 -0.34 0.26 16 43 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 44 H 0.02 0.17 8.11 -51.93 -0.42 -0.25 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -29.76 352.18 -8.18 -37.94 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -6.88 Total: 6.09 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -1.90 Total: -14.72 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: -0.62 Total: -38.25 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.74 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.17 Total: 16.37 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.76 -8.18 -37.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294248150.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.570 kcal (2) G-P(sol) polarization free energy of solvation -29.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds