Wall clock time and date at job start Tue Mar 31 2020 08:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46715 * 2 1 4 4 C 1.52992 * 109.47205 * 120.00082 * 2 1 3 5 5 N 1.46504 * 109.47058 * 295.00092 * 4 2 1 6 6 C 1.34779 * 119.99927 * 180.02562 * 5 4 2 7 7 O 1.21547 * 119.99890 * 359.71843 * 6 5 4 8 8 C 1.47890 * 120.00005 * 180.02562 * 6 5 4 9 9 C 1.39915 * 120.02237 * 359.71946 * 8 6 5 10 10 C 1.38335 * 120.35722 * 179.72332 * 9 8 6 11 11 C 1.37752 * 120.40963 * 0.55229 * 10 9 8 12 12 C 1.40751 * 120.03743 * 359.72619 * 11 10 9 13 13 C 1.41443 * 120.17465 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99878 * 150.38137 * 13 12 11 15 15 C 1.39935 * 120.00250 * 330.38952 * 13 12 11 16 16 N 1.30827 * 120.00294 * 161.91366 * 15 13 12 17 17 Si 1.86799 * 119.99926 * 341.91397 * 15 13 12 18 18 H 1.48492 * 109.47289 * 95.30178 * 17 15 13 19 19 H 1.48499 * 109.47259 * 215.30390 * 17 15 13 20 20 H 1.48506 * 109.47169 * 335.29813 * 17 15 13 21 21 C 1.38990 * 120.02571 * 179.97438 * 8 6 5 22 22 C 1.52999 * 109.47040 * 240.00184 * 2 1 3 23 23 N 1.46901 * 109.47024 * 176.20924 * 22 2 1 24 24 C 1.46903 * 111.00204 * 164.82882 * 23 22 2 25 25 C 1.46898 * 111.00376 * 288.78310 * 23 22 2 26 26 H 1.09000 * 109.47226 * 296.52277 * 1 2 3 27 27 H 1.08996 * 109.47268 * 56.52732 * 1 2 3 28 28 H 1.08996 * 109.46533 * 176.52017 * 1 2 3 29 29 H 1.09002 * 109.47225 * 175.00346 * 4 2 1 30 30 H 1.08994 * 109.47611 * 54.99835 * 4 2 1 31 31 H 0.96995 * 119.99888 * 0.02562 * 5 4 2 32 32 H 1.08002 * 119.82622 * 359.97438 * 9 8 6 33 33 H 1.07997 * 119.79484 * 180.28237 * 10 9 8 34 34 H 1.08000 * 119.98312 * 179.70118 * 11 10 9 35 35 H 0.96999 * 120.00508 * 179.97438 * 16 15 13 36 36 H 1.08003 * 120.20228 * 359.97438 * 21 8 6 37 37 H 1.08995 * 109.47161 * 296.21203 * 22 2 1 38 38 H 1.08996 * 109.47490 * 56.21363 * 22 2 1 39 39 H 1.08997 * 109.46758 * 59.99657 * 24 23 22 40 40 H 1.09000 * 109.47252 * 180.02562 * 24 23 22 41 41 H 1.09000 * 109.47097 * 300.00308 * 24 23 22 42 42 H 1.09006 * 109.47024 * 60.45855 * 25 23 22 43 43 H 1.08996 * 109.47440 * 180.45419 * 25 23 22 44 44 H 1.09000 * 109.47184 * 300.45848 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6525 0.0354 2.4423 6 6 1.9965 -0.4131 3.6659 7 8 2.6239 -1.4479 3.7796 8 6 1.6047 0.3504 4.8704 9 6 0.8821 1.5413 4.7400 10 6 0.5071 2.2580 5.8623 11 6 0.8504 1.8138 7.1202 12 6 1.5823 0.6209 7.2707 13 6 1.9359 0.1618 8.5610 14 1 2.0469 -0.8964 8.7459 15 6 2.1417 1.0787 9.5979 16 7 2.1169 0.6755 10.8422 17 14 2.4519 2.8785 9.2053 18 1 1.1728 3.6291 9.2807 19 1 3.4142 3.4405 10.1868 20 1 3.0153 2.9966 7.8364 21 6 1.9588 -0.1119 6.1324 22 6 2.0400 -0.7212 -1.2493 23 7 3.5062 -0.6424 -1.2959 24 6 4.0549 -1.6073 -2.2582 25 6 3.9505 0.7226 -1.6077 26 1 -0.3634 0.4589 0.9195 27 1 -0.3633 0.5668 -0.8572 28 1 -0.3632 -1.0258 -0.0624 29 1 3.1264 -0.7994 1.2055 30 1 1.6055 -1.7197 1.2952 31 1 1.1483 0.8590 2.3517 32 1 0.6119 1.9010 3.7581 33 1 -0.0545 3.1738 5.7513 34 1 0.5583 2.3813 7.9914 35 1 2.2600 1.3109 11.5610 36 1 2.5198 -1.0287 6.2376 37 1 1.7332 -1.7666 -1.2160 38 1 1.6224 -0.2481 -2.1379 39 1 3.6616 -1.3930 -3.2519 40 1 5.1420 -1.5281 -2.2724 41 1 3.7684 -2.6169 -1.9640 42 1 3.5948 1.4056 -0.8361 43 1 5.0394 0.7510 -1.6440 44 1 3.5467 1.0243 -2.5742 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294248150.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:25 Heat of formation + Delta-G solvation = -44.412829 kcal Electronic energy + Delta-G solvation = -22607.160027 eV Core-core repulsion = 19329.796844 eV Total energy + Delta-G solvation = -3277.363183 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.04108 -39.35729 -38.77865 -36.44476 -35.57168 -33.82196 -32.30890 -31.71591 -28.46917 -27.90335 -27.65582 -26.76381 -24.38918 -23.07252 -22.45191 -21.62040 -21.01206 -19.50379 -18.10862 -17.38410 -17.24436 -16.71638 -16.45873 -16.08596 -16.03186 -15.68508 -15.39963 -15.18911 -14.68479 -14.56335 -14.40099 -13.97006 -13.78037 -13.67936 -13.35283 -13.23306 -13.03257 -12.83085 -12.68540 -12.63545 -12.56626 -12.30021 -12.02746 -11.94247 -11.75060 -11.55493 -11.48941 -11.18742 -10.81363 -10.11655 -9.62037 -9.53702 -9.23357 -8.91271 -6.55248 0.19995 0.75061 1.25722 1.42331 1.49293 1.98088 2.13609 2.26023 2.66625 3.04034 3.46598 3.77616 3.88443 4.02039 4.12692 4.27239 4.30142 4.42079 4.46763 4.52734 4.56373 4.59728 4.67316 4.77161 4.78027 4.86485 4.89605 4.92299 4.99126 5.03832 5.06640 5.09506 5.17006 5.26587 5.38642 5.43312 5.52527 5.66628 5.72577 5.85031 6.11352 6.12635 6.12778 6.30512 6.62226 6.67373 6.74344 7.28899 8.17954 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.029026 B = 0.003054 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.428629 B = 9165.651460 C = 9320.344730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 H 0.086 0.914 4 C 0.133 3.867 5 N -0.708 5.708 6 C 0.558 3.442 7 O -0.590 6.590 8 C -0.113 4.113 9 C -0.182 4.182 10 C -0.081 4.081 11 C -0.226 4.226 12 C 0.066 3.934 13 C -0.489 4.489 14 H 0.048 0.952 15 C 0.044 3.956 16 N -0.850 5.850 17 Si 0.969 3.031 18 H -0.245 1.245 19 H -0.278 1.278 20 H -0.251 1.251 21 C -0.168 4.168 22 C 0.065 3.935 23 N -0.570 5.570 24 C 0.026 3.974 25 C 0.023 3.977 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.413 0.587 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.107 0.893 35 H 0.295 0.705 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.706 6.120 -25.819 26.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 H 0.104 0.896 4 C 0.010 3.990 5 N -0.360 5.360 6 C 0.347 3.653 7 O -0.471 6.471 8 C -0.116 4.116 9 C -0.201 4.201 10 C -0.099 4.099 11 C -0.246 4.246 12 C 0.063 3.937 13 C -0.519 4.519 14 H 0.067 0.933 15 C -0.170 4.170 16 N -0.476 5.476 17 Si 0.791 3.209 18 H -0.170 1.170 19 H -0.204 1.204 20 H -0.175 1.175 21 C -0.189 4.189 22 C -0.064 4.064 23 N -0.294 5.294 24 C -0.122 4.122 25 C -0.125 4.125 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.251 0.749 32 H 0.167 0.833 33 H 0.167 0.833 34 H 0.125 0.875 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.058 5.239 -25.034 25.659 hybrid contribution -0.014 0.307 0.021 0.308 sum -2.072 5.547 -25.012 25.703 Atomic orbital electron populations 1.21850 0.93255 1.02635 1.02850 1.21325 0.96614 1.00172 0.92581 0.89575 1.21341 1.00057 0.94546 0.83048 1.45797 1.57320 1.28225 1.04700 1.18629 0.78179 0.84054 0.84403 1.90686 1.42520 1.26359 1.87569 1.19735 1.02459 0.97508 0.91886 1.20997 1.04459 0.95386 0.99260 1.21050 0.98041 0.99491 0.91328 1.21393 1.05198 0.99915 0.98052 1.17773 0.90898 0.92603 0.92379 1.19465 1.44037 0.95049 0.93325 0.93344 1.26924 0.90789 1.05724 0.93570 1.69723 1.36572 1.40171 1.01161 0.85447 0.79680 0.76254 0.79524 1.16971 1.20449 1.17495 1.21193 1.04245 1.01582 0.91883 1.22125 0.86755 1.01139 0.96357 1.61924 1.09922 1.06771 1.50793 1.22381 1.00527 0.96050 0.93281 1.22438 1.01145 0.89178 0.99769 0.92184 0.90589 0.92537 0.92135 0.93267 0.74902 0.83299 0.83332 0.87527 0.89427 0.89515 0.90600 0.92609 0.94763 0.91213 0.91477 0.91295 0.91428 0.94667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.11 71.98 0.66 -1.22 16 2 C -0.09 -1.35 2.41 -10.79 -0.03 -1.38 16 3 H 0.09 1.22 6.60 -2.39 -0.02 1.20 16 4 C 0.13 3.26 5.00 86.38 0.43 3.69 16 5 N -0.71 -19.55 5.20 -465.94 -2.42 -21.97 16 6 C 0.56 22.06 7.77 86.80 0.67 22.74 16 7 O -0.59 -28.31 16.33 -3.86 -0.06 -28.37 16 8 C -0.11 -4.76 5.87 -20.13 -0.12 -4.87 16 9 C -0.18 -6.18 9.55 22.70 0.22 -5.97 16 10 C -0.08 -2.92 10.01 22.18 0.22 -2.70 16 11 C -0.23 -10.20 7.16 22.77 0.16 -10.03 16 12 C 0.07 3.46 5.11 -21.32 -0.11 3.36 16 13 C -0.49 -28.62 9.57 23.47 0.22 -28.39 16 14 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 15 C 0.04 2.41 5.41 85.25 0.46 2.87 16 16 N -0.85 -47.52 13.93 21.82 0.30 -47.21 16 17 Si 0.97 42.06 24.50 68.60 1.68 43.74 16 18 H -0.25 -9.60 6.70 99.48 0.67 -8.93 16 19 H -0.28 -11.40 7.11 99.48 0.71 -10.70 16 20 H -0.25 -11.09 6.85 99.48 0.68 -10.41 16 21 C -0.17 -8.61 9.34 23.01 0.21 -8.39 16 22 C 0.06 0.91 4.37 86.30 0.38 1.29 16 23 N -0.57 -9.43 4.30 -948.86 -4.08 -13.50 16 24 C 0.03 0.35 9.54 127.69 1.22 1.57 16 25 C 0.02 0.31 9.37 127.69 1.20 1.51 16 26 H 0.06 0.80 7.10 -2.39 -0.02 0.78 16 27 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 1.76 7.58 -2.39 -0.02 1.74 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.41 8.67 5.67 -92.71 -0.53 8.14 16 32 H 0.15 3.50 6.38 -2.91 -0.02 3.49 16 33 H 0.15 3.99 8.06 -2.91 -0.02 3.96 16 34 H 0.11 4.70 4.67 -2.91 -0.01 4.69 16 35 H 0.30 14.68 8.30 -92.71 -0.77 13.91 16 36 H 0.09 4.79 7.64 -2.91 -0.02 4.77 16 37 H 0.08 1.10 7.97 -2.39 -0.02 1.08 16 38 H 0.06 0.63 8.04 -2.39 -0.02 0.61 16 39 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.07 0.92 8.11 -2.39 -0.02 0.90 16 41 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 42 H 0.07 0.97 6.62 -2.38 -0.02 0.95 16 43 H 0.07 0.92 8.11 -2.39 -0.02 0.90 16 44 H 0.03 0.40 8.11 -2.39 -0.02 0.38 16 Total: -1.00 -70.35 352.18 1.62 -68.72 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 0.40 Total: 24.55 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: 5.80 Total: -25.94 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -6.20 Total: -82.69 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -0.06 Total: -28.37 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 1.68 Total: 43.74 kcal Total: -70.35 1.62 -68.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294248150.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.308 kcal (2) G-P(sol) polarization free energy of solvation -70.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds