Wall clock time and date at job start Tue Mar 31 2020 08:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.50701 * 109.47212 * 174.99684 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47294 * 60.00559 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00157 * 9 7 5 13 13 N 1.46904 * 109.47162 * 119.99452 * 2 1 3 14 14 C 1.46960 * 110.99744 * 58.80696 * 13 2 1 15 15 C 1.53050 * 109.36512 * 176.80976 * 14 13 2 16 16 N 1.46960 * 109.36484 * 58.39776 * 15 14 13 17 17 C 1.39665 * 110.99636 * 176.81043 * 16 15 14 18 18 C 1.38972 * 120.04237 * 123.80446 * 17 16 15 19 19 C 1.38114 * 120.03367 * 179.97438 * 18 17 16 20 20 C 1.38220 * 120.13132 * 359.97438 * 19 18 17 21 21 C 1.38774 * 120.08693 * 0.02562 * 20 19 18 22 22 O 1.35900 * 120.01057 * 179.97438 * 21 20 19 23 23 C 1.38615 * 119.96470 * 359.70745 * 21 20 19 24 24 C 1.46951 * 110.87860 * 300.68066 * 16 15 14 25 25 C 1.46947 * 111.00539 * 295.00479 * 13 2 1 26 26 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 27 27 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 28 28 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 30 30 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 31 31 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.48599 * 296.77974 * 14 13 2 33 33 H 1.09000 * 109.49267 * 56.83572 * 14 13 2 34 34 H 1.08995 * 109.48592 * 298.42880 * 15 14 13 35 35 H 1.09001 * 109.50299 * 178.37643 * 15 14 13 36 36 H 1.08007 * 119.98462 * 359.97438 * 18 17 16 37 37 H 1.08008 * 119.93251 * 180.02562 * 19 18 17 38 38 H 1.07991 * 119.95384 * 180.02562 * 20 19 18 39 39 H 0.96703 * 113.99767 * 90.01156 * 22 21 20 40 40 H 1.08001 * 120.05977 * 180.31678 * 23 21 20 41 41 H 1.08998 * 109.49134 * 299.35228 * 24 16 15 42 42 H 1.09004 * 109.48915 * 179.28485 * 24 16 15 43 43 H 1.09006 * 109.48668 * 303.15646 * 25 13 2 44 44 H 1.09001 * 109.48849 * 63.19565 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0860 -0.5392 7 6 4.2305 -1.1934 -2.3578 8 7 3.5765 -1.8377 -3.2994 9 14 6.0922 -1.0621 -2.4360 10 1 6.6839 -1.6881 -1.2263 11 1 6.5872 -1.7620 -3.6486 12 1 6.4855 0.3687 -2.4957 13 7 2.0196 -0.6924 1.1995 14 6 1.5252 -2.0755 1.2479 15 6 2.1202 -2.7848 2.4667 16 7 1.7490 -2.0528 3.6858 17 6 2.2146 -2.7112 4.8261 18 6 3.0340 -2.0442 5.7289 19 6 3.4939 -2.6953 6.8567 20 6 3.1404 -4.0109 7.0910 21 6 2.3225 -4.6820 6.1930 22 8 1.9763 -5.9756 6.4246 23 6 1.8542 -4.0304 5.0627 24 6 2.2435 -0.6698 3.6373 25 6 1.6485 0.0394 2.4186 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6054 -0.2617 -2.1370 30 1 1.7517 -1.7715 -1.2055 31 1 4.0609 -2.2444 -4.0348 32 1 0.4379 -2.0705 1.3249 33 1 1.8233 -2.6003 0.3403 34 1 3.2060 -2.8138 2.3763 35 1 1.7324 -3.8020 2.5210 36 1 3.3114 -1.0161 5.5484 37 1 4.1303 -2.1752 7.5575 38 1 3.5013 -4.5171 7.9740 39 1 1.1636 -6.0793 6.9383 40 1 1.2134 -4.5497 4.3654 41 1 3.3307 -0.6748 3.5603 42 1 1.9453 -0.1450 4.5449 43 1 2.0366 1.0566 2.3644 44 1 0.5626 0.0688 2.5087 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297788251.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:11 Heat of formation + Delta-G solvation = 1.746004 kcal Electronic energy + Delta-G solvation = -23528.645265 eV Core-core repulsion = 20253.283679 eV Total energy + Delta-G solvation = -3275.361586 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -40.47855 -38.93907 -37.26076 -35.44875 -32.88330 -31.46812 -30.99351 -29.92360 -28.70432 -27.33597 -25.58915 -24.05508 -23.04996 -22.01487 -21.76599 -20.18532 -18.78427 -18.29809 -16.83444 -16.19474 -15.93467 -15.83402 -15.28561 -14.79179 -14.63584 -14.47564 -14.24267 -13.86618 -13.84989 -13.53972 -13.02299 -12.49045 -12.28375 -12.08780 -11.91720 -11.73876 -11.64345 -11.54142 -11.16471 -11.01827 -10.77683 -10.68149 -10.61674 -10.41392 -10.32996 -9.90937 -9.68679 -9.16667 -9.01383 -8.81509 -8.27497 -7.85150 -7.52717 -5.90834 -3.89049 1.16438 1.28168 3.39525 3.43629 3.47003 3.47816 3.71814 4.24015 4.46763 4.55156 4.75436 4.99723 5.05240 5.12706 5.27389 5.28681 5.44802 5.47261 5.53845 5.56514 5.66902 5.75696 5.77526 5.81480 5.89658 5.94131 6.01780 6.11554 6.18890 6.26870 6.32268 6.35997 6.41027 6.52459 6.58336 6.68423 6.94287 7.03489 7.24026 7.49989 7.52753 7.64256 7.85486 7.97343 8.10219 8.55219 9.16773 9.73026 11.20971 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.017253 B = 0.004017 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.512311 B = 6968.135447 C = 7571.108422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.071 0.929 4 C 0.029 3.971 5 C -0.493 4.493 6 H 0.059 0.941 7 C 0.052 3.948 8 N -0.903 5.903 9 Si 0.889 3.111 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.512 5.512 14 C 0.055 3.945 15 C 0.063 3.937 16 N -0.491 5.491 17 C 0.139 3.861 18 C -0.182 4.182 19 C -0.078 4.078 20 C -0.180 4.180 21 C 0.127 3.873 22 O -0.500 6.500 23 C -0.170 4.170 24 C 0.055 3.945 25 C 0.051 3.949 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.019 0.981 30 H 0.020 0.980 31 H 0.258 0.742 32 H 0.035 0.965 33 H 0.100 0.900 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.389 0.611 40 H 0.130 0.870 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.393 -1.520 19.555 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.021 4.021 3 H 0.089 0.911 4 C -0.008 4.008 5 C -0.532 4.532 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.544 5.544 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.205 1.205 13 N -0.236 5.236 14 C -0.073 4.073 15 C -0.062 4.062 16 N -0.206 5.206 17 C 0.040 3.960 18 C -0.203 4.203 19 C -0.096 4.096 20 C -0.200 4.200 21 C 0.082 3.918 22 O -0.310 6.310 23 C -0.191 4.191 24 C -0.072 4.072 25 C -0.078 4.078 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.038 0.962 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.118 0.882 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.245 0.755 40 H 0.148 0.852 41 H 0.074 0.926 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.871 -1.699 18.957 19.647 hybrid contribution 0.434 0.089 0.197 0.485 sum -4.436 -1.610 19.154 19.727 Atomic orbital electron populations 1.22513 0.99668 1.01367 1.00726 1.21910 0.90125 0.98430 0.91590 0.91124 1.19224 0.96370 0.95331 0.89881 1.21129 0.91762 1.33210 1.07059 0.92229 1.24994 0.97974 0.95821 0.95957 1.69948 1.35337 1.36779 1.12318 0.86707 0.86396 0.78020 0.77106 1.20425 1.21623 1.20485 1.62306 1.58892 1.01300 1.01087 1.22222 0.96796 0.90609 0.97670 1.22380 1.00075 0.96696 0.87080 1.59232 1.56082 1.03540 1.01747 1.18867 0.92073 0.92326 0.92692 1.21385 1.00102 1.01659 0.97133 1.20851 0.98202 0.93952 0.96628 1.21265 1.03012 0.95117 1.00565 1.18252 0.96643 0.83259 0.93656 1.84822 1.47238 1.22091 1.76867 1.21016 1.04238 0.93987 0.99819 1.22365 0.98904 0.87228 0.98663 1.22177 0.98097 0.97546 0.89933 0.94014 0.92529 0.92897 0.96283 0.96229 0.93224 0.94663 0.88158 0.92544 0.90246 0.85202 0.85744 0.85856 0.75540 0.85200 0.92551 0.90299 0.90437 0.94500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 8.49 37.15 0.32 -2.79 16 2 C 0.09 1.73 2.30 -67.71 -0.16 1.57 16 3 H 0.07 1.42 8.11 -51.92 -0.42 1.00 16 4 C 0.03 0.72 4.27 -27.88 -0.12 0.60 16 5 C -0.49 -13.58 8.84 -34.44 -0.30 -13.88 16 6 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.39 16 8 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 9 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.51 -9.40 4.41 -226.49 -1.00 -10.40 16 14 C 0.06 0.97 4.82 -3.77 -0.02 0.95 16 15 C 0.06 0.98 5.38 -3.77 -0.02 0.96 16 16 N -0.49 -6.99 4.75 -170.98 -0.81 -7.80 16 17 C 0.14 1.86 5.63 -83.82 -0.47 1.39 16 18 C -0.18 -2.16 8.81 -39.36 -0.35 -2.51 16 19 C -0.08 -0.81 10.03 -39.63 -0.40 -1.21 16 20 C -0.18 -1.94 9.98 -39.39 -0.39 -2.33 16 21 C 0.13 1.49 6.70 -39.24 -0.26 1.23 16 22 O -0.50 -5.19 13.50 -19.43 -0.26 -5.45 16 23 C -0.17 -2.17 9.13 -39.24 -0.36 -2.53 16 24 C 0.06 0.75 4.29 -3.77 -0.02 0.73 16 25 C 0.05 0.77 5.25 -3.77 -0.02 0.75 16 26 H 0.04 0.63 6.59 -51.93 -0.34 0.29 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.90 6.45 -51.92 -0.34 0.56 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.02 0.51 6.11 -51.93 -0.32 0.19 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.04 0.60 6.46 -51.93 -0.34 0.26 16 33 H 0.10 2.03 6.07 -51.93 -0.32 1.71 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.13 6.83 -51.93 -0.35 0.78 16 36 H 0.13 1.40 5.80 -52.48 -0.30 1.09 16 37 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 38 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.39 2.06 9.06 45.56 0.41 2.47 16 40 H 0.13 1.62 7.20 -52.49 -0.38 1.24 16 41 H 0.06 0.81 7.58 -51.93 -0.39 0.42 16 42 H 0.08 0.90 7.17 -51.93 -0.37 0.53 16 43 H 0.08 1.10 8.12 -51.93 -0.42 0.68 16 44 H 0.04 0.55 6.60 -51.93 -0.34 0.21 16 LS Contribution 340.98 15.07 5.14 5.14 Total: -1.00 -31.17 340.98 -9.76 -40.93 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -5.88 Total: 2.54 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -2.67 Total: -15.69 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: -1.08 Total: -44.39 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -0.26 Total: -5.45 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.17 -9.76 -40.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297788251.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.674 kcal (2) G-P(sol) polarization free energy of solvation -31.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds