Wall clock time and date at job start Tue Mar 31 2020 08:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.50701 * 109.47212 * 174.99684 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47294 * 60.00559 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00157 * 9 7 5 13 13 N 1.46904 * 109.47162 * 119.99452 * 2 1 3 14 14 C 1.46960 * 110.99744 * 58.80696 * 13 2 1 15 15 C 1.53050 * 109.36512 * 176.80976 * 14 13 2 16 16 N 1.46960 * 109.36484 * 58.39776 * 15 14 13 17 17 C 1.39665 * 110.99636 * 176.81043 * 16 15 14 18 18 C 1.38972 * 120.04237 * 123.80446 * 17 16 15 19 19 C 1.38114 * 120.03367 * 179.97438 * 18 17 16 20 20 C 1.38220 * 120.13132 * 359.97438 * 19 18 17 21 21 C 1.38774 * 120.08693 * 0.02562 * 20 19 18 22 22 O 1.35900 * 120.01057 * 179.97438 * 21 20 19 23 23 C 1.38615 * 119.96470 * 359.70745 * 21 20 19 24 24 C 1.46951 * 110.87860 * 300.68066 * 16 15 14 25 25 C 1.46947 * 111.00539 * 295.00479 * 13 2 1 26 26 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 27 27 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 28 28 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 30 30 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 31 31 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.48599 * 296.77974 * 14 13 2 33 33 H 1.09000 * 109.49267 * 56.83572 * 14 13 2 34 34 H 1.08995 * 109.48592 * 298.42880 * 15 14 13 35 35 H 1.09001 * 109.50299 * 178.37643 * 15 14 13 36 36 H 1.08007 * 119.98462 * 359.97438 * 18 17 16 37 37 H 1.08008 * 119.93251 * 180.02562 * 19 18 17 38 38 H 1.07991 * 119.95384 * 180.02562 * 20 19 18 39 39 H 0.96703 * 113.99767 * 90.01156 * 22 21 20 40 40 H 1.08001 * 120.05977 * 180.31678 * 23 21 20 41 41 H 1.08998 * 109.49134 * 299.35228 * 24 16 15 42 42 H 1.09004 * 109.48915 * 179.28485 * 24 16 15 43 43 H 1.09006 * 109.48668 * 303.15646 * 25 13 2 44 44 H 1.09001 * 109.48849 * 63.19565 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0860 -0.5392 7 6 4.2305 -1.1934 -2.3578 8 7 3.5765 -1.8377 -3.2994 9 14 6.0922 -1.0621 -2.4360 10 1 6.6839 -1.6881 -1.2263 11 1 6.5872 -1.7620 -3.6486 12 1 6.4855 0.3687 -2.4957 13 7 2.0196 -0.6924 1.1995 14 6 1.5252 -2.0755 1.2479 15 6 2.1202 -2.7848 2.4667 16 7 1.7490 -2.0528 3.6858 17 6 2.2146 -2.7112 4.8261 18 6 3.0340 -2.0442 5.7289 19 6 3.4939 -2.6953 6.8567 20 6 3.1404 -4.0109 7.0910 21 6 2.3225 -4.6820 6.1930 22 8 1.9763 -5.9756 6.4246 23 6 1.8542 -4.0304 5.0627 24 6 2.2435 -0.6698 3.6373 25 6 1.6485 0.0394 2.4186 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6054 -0.2617 -2.1370 30 1 1.7517 -1.7715 -1.2055 31 1 4.0609 -2.2444 -4.0348 32 1 0.4379 -2.0705 1.3249 33 1 1.8233 -2.6003 0.3403 34 1 3.2060 -2.8138 2.3763 35 1 1.7324 -3.8020 2.5210 36 1 3.3114 -1.0161 5.5484 37 1 4.1303 -2.1752 7.5575 38 1 3.5013 -4.5171 7.9740 39 1 1.1636 -6.0793 6.9383 40 1 1.2134 -4.5497 4.3654 41 1 3.3307 -0.6748 3.5603 42 1 1.9453 -0.1450 4.5449 43 1 2.0366 1.0566 2.3644 44 1 0.5626 0.0688 2.5087 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297788251.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:07 Heat of formation + Delta-G solvation = -20.127575 kcal Electronic energy + Delta-G solvation = -23529.593774 eV Core-core repulsion = 20253.283679 eV Total energy + Delta-G solvation = -3276.310096 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -41.50994 -40.04559 -38.36584 -36.54869 -34.83980 -32.84183 -32.25918 -30.97773 -29.79838 -29.14396 -26.81988 -25.37682 -24.80391 -23.09341 -22.77082 -21.50296 -20.13025 -19.29448 -18.34773 -17.76738 -16.95123 -16.92841 -16.56697 -16.38392 -15.88336 -15.68868 -15.49423 -15.13721 -15.02635 -14.66757 -14.46444 -13.93919 -13.67832 -13.43659 -13.25589 -13.12683 -12.88552 -12.77795 -12.63941 -12.51303 -12.43205 -12.21467 -12.04661 -11.80136 -11.59403 -11.48888 -11.10609 -10.98078 -10.66712 -10.46900 -9.68467 -8.96352 -8.84314 -8.10075 -6.14720 0.30031 0.38854 1.41287 1.43377 1.50749 2.46798 2.54144 2.79374 3.06935 3.26686 3.41051 3.79510 3.94294 4.04173 4.17901 4.21190 4.26317 4.29062 4.34445 4.38340 4.42889 4.56257 4.57819 4.59708 4.69963 4.77192 4.87561 4.94467 4.95447 5.02411 5.07371 5.20117 5.26307 5.29400 5.43232 5.49868 5.50812 5.67499 5.72540 5.89872 5.94245 6.23554 6.32966 6.39433 6.51544 6.87160 6.99066 7.51215 9.01659 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.017253 B = 0.004017 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.512311 B = 6968.135447 C = 7571.108422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.096 3.904 3 H 0.069 0.931 4 C 0.035 3.965 5 C -0.500 4.500 6 H 0.057 0.943 7 C -0.002 4.002 8 N -0.939 5.939 9 Si 0.953 3.047 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.269 1.269 13 N -0.531 5.531 14 C 0.063 3.937 15 C 0.074 3.926 16 N -0.491 5.491 17 C 0.118 3.882 18 C -0.188 4.188 19 C -0.075 4.075 20 C -0.180 4.180 21 C 0.122 3.878 22 O -0.511 6.511 23 C -0.185 4.185 24 C 0.060 3.940 25 C 0.053 3.947 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.047 0.953 29 H -0.008 1.008 30 H -0.002 1.002 31 H 0.258 0.742 32 H 0.043 0.957 33 H 0.064 0.936 34 H 0.033 0.967 35 H 0.088 0.912 36 H 0.141 0.859 37 H 0.154 0.846 38 H 0.144 0.856 39 H 0.410 0.590 40 H 0.124 0.876 41 H 0.046 0.954 42 H 0.107 0.893 43 H 0.088 0.912 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.885 -0.845 22.322 22.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.012 4.012 3 H 0.087 0.913 4 C -0.002 4.002 5 C -0.539 4.539 6 H 0.076 0.924 7 C -0.198 4.198 8 N -0.581 5.581 9 Si 0.779 3.221 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.194 1.194 13 N -0.256 5.256 14 C -0.065 4.065 15 C -0.052 4.052 16 N -0.207 5.207 17 C 0.020 3.980 18 C -0.209 4.209 19 C -0.093 4.093 20 C -0.199 4.199 21 C 0.077 3.923 22 O -0.324 6.324 23 C -0.206 4.206 24 C -0.067 4.067 25 C -0.075 4.075 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.010 0.990 30 H 0.017 0.983 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.106 0.894 36 H 0.159 0.841 37 H 0.171 0.829 38 H 0.162 0.838 39 H 0.270 0.730 40 H 0.142 0.858 41 H 0.065 0.935 42 H 0.125 0.875 43 H 0.107 0.893 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.378 -1.021 21.763 22.223 hybrid contribution 0.262 -0.182 -0.579 0.661 sum -4.116 -1.203 21.184 21.614 Atomic orbital electron populations 1.22369 0.97261 1.01489 1.02037 1.21608 0.91996 0.97395 0.90235 0.91322 1.19078 0.95154 0.94454 0.91538 1.21455 0.93264 1.32477 1.06661 0.92447 1.25807 1.02610 0.95661 0.95760 1.70079 1.37083 1.37928 1.13018 0.85683 0.80909 0.78410 0.77068 1.20025 1.21367 1.19390 1.62198 1.59697 1.01748 1.01908 1.22035 0.97171 0.90267 0.97018 1.22168 0.98394 0.97237 0.87416 1.59242 1.56499 1.03665 1.01273 1.18975 0.93459 0.92819 0.92724 1.21589 0.99768 1.02249 0.97280 1.21201 0.97754 0.93924 0.96455 1.21568 1.02132 0.95334 1.00855 1.18378 0.96727 0.83628 0.93533 1.84764 1.48731 1.21433 1.77466 1.21101 1.04823 0.94182 1.00470 1.22383 0.98204 0.87087 0.99041 1.22253 0.98715 0.97799 0.88707 0.91429 0.92418 0.93357 0.98979 0.98342 0.93293 0.93939 0.91810 0.94821 0.89375 0.84147 0.82863 0.83799 0.73042 0.85775 0.93541 0.87503 0.89343 0.93739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.71 8.49 71.98 0.61 -5.10 16 2 C 0.10 3.81 2.30 44.91 0.10 3.92 16 3 H 0.07 2.75 8.11 -2.38 -0.02 2.73 16 4 C 0.03 1.79 4.27 29.85 0.13 1.92 16 5 C -0.50 -28.18 8.84 25.60 0.23 -27.96 16 6 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 7 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 8 N -0.94 -57.55 13.29 21.45 0.28 -57.27 16 9 Si 0.95 45.54 29.54 68.60 2.03 47.57 16 10 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 N -0.53 -19.48 4.41 -870.48 -3.84 -23.32 16 14 C 0.06 2.28 4.82 86.31 0.42 2.70 16 15 C 0.07 2.33 5.38 86.31 0.46 2.79 16 16 N -0.49 -13.48 4.75 -694.87 -3.30 -16.78 16 17 C 0.12 3.00 5.63 38.20 0.22 3.22 16 18 C -0.19 -4.04 8.81 22.42 0.20 -3.84 16 19 C -0.07 -1.34 10.03 22.24 0.22 -1.12 16 20 C -0.18 -3.36 9.98 22.39 0.22 -3.14 16 21 C 0.12 2.67 6.70 22.49 0.15 2.82 16 22 O -0.51 -9.71 13.50 -92.42 -1.25 -10.95 16 23 C -0.18 -4.57 9.13 22.49 0.21 -4.37 16 24 C 0.06 1.50 4.29 86.31 0.37 1.87 16 25 C 0.05 1.50 5.25 86.31 0.45 1.96 16 26 H 0.07 1.89 6.59 -2.39 -0.02 1.87 16 27 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.05 1.63 6.45 -2.38 -0.02 1.61 16 29 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 30 H 0.00 -0.09 6.11 -2.39 -0.01 -0.11 16 31 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 32 H 0.04 1.45 6.46 -2.39 -0.02 1.43 16 33 H 0.06 2.74 6.07 -2.39 -0.01 2.73 16 34 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.09 2.58 6.83 -2.39 -0.02 2.56 16 36 H 0.14 2.63 5.80 -2.91 -0.02 2.62 16 37 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 38 H 0.14 2.06 8.06 -2.92 -0.02 2.04 16 39 H 0.41 3.54 9.06 -74.06 -0.67 2.87 16 40 H 0.12 3.09 7.20 -2.91 -0.02 3.07 16 41 H 0.05 1.27 7.58 -2.39 -0.02 1.25 16 42 H 0.11 2.11 7.17 -2.38 -0.02 2.10 16 43 H 0.09 2.30 8.12 -2.38 -0.02 2.29 16 44 H 0.04 1.21 6.60 -2.39 -0.02 1.19 16 Total: -1.00 -67.97 340.98 -1.30 -69.27 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.33 Total: 15.47 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 4.45 Total: -23.99 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -6.86 Total: -97.37 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -1.25 Total: -10.95 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -67.97 -1.30 -69.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297788251.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.141 kcal (2) G-P(sol) polarization free energy of solvation -67.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds