Wall clock time and date at job start Tue Mar 31 2020 08:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47622 * 2 1 4 4 C 1.52998 * 109.47008 * 120.00327 * 2 1 3 5 5 C 1.50702 * 109.47048 * 185.00122 * 4 2 1 6 6 H 1.08000 * 119.99928 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00263 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00133 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99967 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47149 * 89.99981 * 9 7 5 11 11 H 1.48499 * 109.47122 * 210.00179 * 9 7 5 12 12 H 1.48500 * 109.46755 * 330.00215 * 9 7 5 13 13 N 1.46908 * 109.46995 * 239.99747 * 2 1 3 14 14 C 1.48063 * 111.16278 * 305.77884 * 13 2 1 15 15 C 1.53988 * 107.14301 * 145.63493 * 14 13 2 16 16 C 1.54600 * 105.14018 * 358.91186 * 15 14 13 17 17 H 1.09001 * 110.71831 * 96.40264 * 16 15 14 18 18 O 1.42898 * 110.87645 * 219.61828 * 16 15 14 19 19 C 1.42900 * 113.99800 * 263.58663 * 18 16 15 20 20 C 1.50697 * 109.47194 * 180.02562 * 19 18 16 21 21 C 1.38642 * 120.79247 * 269.71926 * 20 19 18 22 22 C 1.38210 * 119.16332 * 179.79651 * 21 20 19 23 23 N 1.31871 * 120.76309 * 0.49210 * 22 21 20 24 24 C 1.31867 * 121.72560 * 359.74067 * 23 22 21 25 25 C 1.38201 * 120.76347 * 0.02562 * 24 23 22 26 26 C 1.48527 * 110.99687 * 63.17250 * 13 2 1 27 27 H 1.08998 * 109.47276 * 187.55505 * 1 2 3 28 28 H 1.08997 * 109.47186 * 307.55303 * 1 2 3 29 29 H 1.08992 * 109.47190 * 67.55840 * 1 2 3 30 30 H 1.09001 * 109.47288 * 304.99069 * 4 2 1 31 31 H 1.08991 * 109.47784 * 64.99933 * 4 2 1 32 32 H 0.97004 * 119.99795 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.75975 * 26.31304 * 14 13 2 34 34 H 1.09004 * 110.15732 * 265.17009 * 14 13 2 35 35 H 1.09002 * 110.30833 * 240.00056 * 15 14 13 36 36 H 1.08995 * 110.39895 * 117.87392 * 15 14 13 37 37 H 1.09006 * 109.47615 * 300.00550 * 19 18 16 38 38 H 1.09000 * 109.47114 * 60.00062 * 19 18 16 39 39 H 1.07998 * 120.42046 * 0.02562 * 21 20 19 40 40 H 1.08004 * 119.61853 * 180.20935 * 22 21 20 41 41 H 1.07998 * 119.61927 * 180.02562 * 24 23 22 42 42 H 1.08001 * 120.42113 * 179.97438 * 25 24 23 43 43 H 1.08996 * 110.67186 * 81.84477 * 26 13 2 44 44 H 1.09000 * 110.67296 * 318.88080 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0862 0.5392 7 6 4.2303 -1.1927 2.3582 8 7 5.5411 -1.1003 2.4134 9 14 3.3013 -2.1067 3.6966 10 1 3.1697 -3.5370 3.3193 11 1 4.0451 -1.9990 4.9773 12 1 1.9507 -1.5107 3.8568 13 7 2.0196 -0.6926 -1.1995 14 6 1.4367 -2.0492 -1.3088 15 6 1.2419 -2.3401 -2.8084 16 6 1.7214 -1.0615 -3.5333 17 1 2.7548 -1.1695 -3.8626 18 8 0.8698 -0.7531 -4.6385 19 6 1.3526 -1.2316 -5.8955 20 6 0.3821 -0.8518 -6.9840 21 6 -0.6571 -1.6994 -7.3358 22 6 -1.5301 -1.3155 -8.3361 23 7 -1.3772 -0.1634 -8.9593 24 6 -0.3979 0.6653 -8.6543 25 6 0.5108 0.3510 -7.6617 26 6 1.6070 0.0238 -2.4334 27 1 -0.3634 -1.0187 0.1351 28 1 -0.3633 0.6263 0.8147 29 1 -0.3633 0.3923 -0.9498 30 1 1.6055 -0.2618 2.1370 31 1 1.7516 -1.7715 1.2056 32 1 6.0255 -1.5071 3.1488 33 1 0.4750 -2.0794 -0.7966 34 1 2.1126 -2.7848 -0.8726 35 1 0.1897 -2.5253 -3.0243 36 1 1.8458 -3.1955 -3.1110 37 1 2.3253 -0.7861 -6.1046 38 1 1.4506 -2.3165 -5.8579 39 1 -0.7851 -2.6461 -6.8320 40 1 -2.3443 -1.9686 -8.6137 41 1 -0.3048 1.6005 -9.1865 42 1 1.3111 1.0337 -7.4167 43 1 2.2824 0.8539 -2.6405 44 1 0.5797 0.3777 -2.3476 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298524912.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:24 Heat of formation + Delta-G solvation = 1.703855 kcal Electronic energy + Delta-G solvation = -22766.589389 eV Core-core repulsion = 19491.225975 eV Total energy + Delta-G solvation = -3275.363414 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 3.24 seconds Orbital eigenvalues (eV) -40.47173 -39.39523 -37.42865 -34.10648 -33.06608 -31.95820 -31.51299 -29.08385 -28.17710 -27.69615 -26.52538 -23.77032 -23.23268 -22.31381 -21.55531 -20.80945 -18.70907 -17.37193 -16.92316 -16.69959 -16.58249 -15.96090 -15.53388 -15.13524 -14.64005 -14.35758 -14.08420 -14.03880 -13.91126 -13.64776 -13.20284 -12.70061 -12.42631 -12.27254 -12.16376 -11.82545 -11.76730 -11.51392 -11.30460 -11.22991 -11.06880 -10.75977 -10.31210 -10.10702 -9.97941 -9.82315 -9.78738 -9.61334 -9.49776 -9.44805 -9.07046 -8.44395 -7.66690 -5.92701 -3.87106 0.83582 0.84413 3.28973 3.33877 3.41858 3.44146 3.73312 4.16121 4.39577 4.40125 4.52446 4.62543 4.76207 4.81421 4.87813 4.89961 5.10137 5.11706 5.16853 5.32075 5.39518 5.42270 5.47879 5.60969 5.64341 5.76031 5.79757 5.82112 5.91721 5.95112 6.01356 6.06271 6.24047 6.36140 6.37701 6.51042 6.53455 6.75484 7.04573 7.10963 7.30391 7.55947 7.65266 7.74529 7.91544 8.70028 9.19749 9.70175 11.21267 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.036285 B = 0.002789 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.473876 B =10038.224030 C =10125.184339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.088 3.912 3 H 0.078 0.922 4 C -0.006 4.006 5 C -0.492 4.492 6 H 0.079 0.921 7 C 0.062 3.938 8 N -0.908 5.908 9 Si 0.873 3.127 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.268 1.268 13 N -0.482 5.482 14 C 0.035 3.965 15 C -0.150 4.150 16 C 0.085 3.915 17 H 0.078 0.922 18 O -0.373 6.373 19 C 0.100 3.900 20 C -0.041 4.041 21 C -0.153 4.153 22 C 0.094 3.906 23 N -0.485 5.485 24 C 0.095 3.905 25 C -0.152 4.152 26 C 0.032 3.968 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.019 0.981 31 H 0.012 0.988 32 H 0.260 0.740 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.136 0.864 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.137 0.863 43 H 0.082 0.918 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.055 -0.775 -19.641 23.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.021 4.021 3 H 0.096 0.904 4 C -0.043 4.043 5 C -0.530 4.530 6 H 0.097 0.903 7 C -0.138 4.138 8 N -0.548 5.548 9 Si 0.701 3.299 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.207 5.207 14 C -0.093 4.093 15 C -0.189 4.189 16 C 0.027 3.973 17 H 0.096 0.904 18 O -0.291 6.291 19 C 0.023 3.977 20 C -0.050 4.050 21 C -0.173 4.173 22 C -0.062 4.062 23 N -0.194 5.194 24 C -0.062 4.062 25 C -0.172 4.172 26 C -0.096 4.096 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.037 0.963 31 H 0.030 0.970 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.154 0.846 40 H 0.174 0.826 41 H 0.174 0.826 42 H 0.155 0.845 43 H 0.100 0.900 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.082 -0.518 -20.100 23.458 hybrid contribution -0.428 -0.961 1.469 1.807 sum -12.510 -1.479 -18.631 22.490 Atomic orbital electron populations 1.22598 0.99619 1.01601 1.01181 1.21820 0.90025 0.98865 0.91344 0.90356 1.19650 0.98049 0.94969 0.91633 1.21057 0.89367 1.33976 1.08629 0.90284 1.25014 0.94674 0.96316 0.97799 1.69914 1.06405 1.46145 1.32318 0.86900 0.80427 0.80586 0.82024 1.20583 1.21595 1.19302 1.65002 1.54126 1.01084 1.00451 1.22860 0.99120 0.93215 0.94120 1.22894 1.01596 0.97968 0.96401 1.23095 0.93464 0.94933 0.85846 0.90375 1.87954 1.48261 1.78714 1.14216 1.21333 0.94839 0.98816 0.82687 1.20090 0.95559 0.94206 0.95105 1.22109 0.95243 1.01186 0.98755 1.22775 0.97906 0.93214 0.92330 1.67667 1.20792 1.03905 1.27076 1.22782 0.90156 0.98480 0.94761 1.22129 1.01092 0.96815 0.97170 1.23266 1.00173 0.96339 0.89794 0.92643 0.92368 0.93161 0.96306 0.97020 0.93049 0.93182 0.89883 0.91084 0.91207 0.91779 0.91954 0.84621 0.82622 0.82567 0.84484 0.89964 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.09 8.49 37.16 0.32 -2.78 16 2 C 0.09 1.72 2.33 -67.71 -0.16 1.56 16 3 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 4 C -0.01 -0.13 3.47 -27.88 -0.10 -0.23 16 5 C -0.49 -13.86 9.39 -34.44 -0.32 -14.18 16 6 H 0.08 2.44 7.99 -52.49 -0.42 2.02 16 7 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 8 N -0.91 -28.18 13.96 55.43 0.77 -27.41 16 9 Si 0.87 21.77 27.47 -169.99 -4.67 17.10 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 13 N -0.48 -8.96 5.00 -222.37 -1.11 -10.07 16 14 C 0.03 0.58 5.31 -2.67 -0.01 0.56 16 15 C -0.15 -2.01 6.70 -25.38 -0.17 -2.18 16 16 C 0.08 1.13 3.55 -24.87 -0.09 1.05 16 17 H 0.08 1.01 7.82 -51.93 -0.41 0.61 16 18 O -0.37 -4.70 10.08 -35.23 -0.35 -5.05 16 19 C 0.10 0.97 5.95 36.00 0.21 1.18 16 20 C -0.04 -0.40 5.55 -104.32 -0.58 -0.98 16 21 C -0.15 -1.35 9.82 -39.44 -0.39 -1.74 16 22 C 0.09 0.85 11.18 -17.55 -0.20 0.65 16 23 N -0.48 -5.07 10.36 -13.25 -0.14 -5.21 16 24 C 0.09 0.85 11.18 -17.55 -0.20 0.66 16 25 C -0.15 -1.36 9.82 -39.44 -0.39 -1.74 16 26 C 0.03 0.50 6.13 -1.90 -0.01 0.49 16 27 H 0.05 0.88 6.16 -51.93 -0.32 0.56 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.74 5.90 -51.93 -0.31 0.44 16 30 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 31 H 0.01 0.27 6.64 -51.93 -0.34 -0.07 16 32 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.05 0.81 5.29 -51.93 -0.27 0.54 16 34 H 0.08 1.52 8.11 -51.93 -0.42 1.10 16 35 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.55 8.07 -51.93 -0.42 0.13 16 38 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 39 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 40 H 0.16 0.97 8.06 -52.48 -0.42 0.55 16 41 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.05 0.82 5.76 -51.93 -0.30 0.52 16 LS Contribution 350.17 15.07 5.28 5.28 Total: -1.00 -32.48 350.17 -9.37 -41.85 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -6.97 Total: -0.51 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -2.18 Total: -15.99 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: -0.47 Total: -42.68 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.35 Total: -5.05 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.48 -9.37 -41.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298524912.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.555 kcal (2) G-P(sol) polarization free energy of solvation -32.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.24 seconds