Wall clock time and date at job start Tue Mar 31 2020 08:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47622 * 2 1 4 4 C 1.52998 * 109.47008 * 120.00327 * 2 1 3 5 5 C 1.50702 * 109.47048 * 185.00122 * 4 2 1 6 6 H 1.08000 * 119.99928 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00263 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00133 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99967 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47149 * 89.99981 * 9 7 5 11 11 H 1.48499 * 109.47122 * 210.00179 * 9 7 5 12 12 H 1.48500 * 109.46755 * 330.00215 * 9 7 5 13 13 N 1.46908 * 109.46995 * 239.99747 * 2 1 3 14 14 C 1.48063 * 111.16278 * 305.77884 * 13 2 1 15 15 C 1.53988 * 107.14301 * 145.63493 * 14 13 2 16 16 C 1.54600 * 105.14018 * 358.91186 * 15 14 13 17 17 H 1.09001 * 110.71831 * 96.40264 * 16 15 14 18 18 O 1.42898 * 110.87645 * 219.61828 * 16 15 14 19 19 C 1.42900 * 113.99800 * 263.58663 * 18 16 15 20 20 C 1.50697 * 109.47194 * 180.02562 * 19 18 16 21 21 C 1.38642 * 120.79247 * 269.71926 * 20 19 18 22 22 C 1.38210 * 119.16332 * 179.79651 * 21 20 19 23 23 N 1.31871 * 120.76309 * 0.49210 * 22 21 20 24 24 C 1.31867 * 121.72560 * 359.74067 * 23 22 21 25 25 C 1.38201 * 120.76347 * 0.02562 * 24 23 22 26 26 C 1.48527 * 110.99687 * 63.17250 * 13 2 1 27 27 H 1.08998 * 109.47276 * 187.55505 * 1 2 3 28 28 H 1.08997 * 109.47186 * 307.55303 * 1 2 3 29 29 H 1.08992 * 109.47190 * 67.55840 * 1 2 3 30 30 H 1.09001 * 109.47288 * 304.99069 * 4 2 1 31 31 H 1.08991 * 109.47784 * 64.99933 * 4 2 1 32 32 H 0.97004 * 119.99795 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.75975 * 26.31304 * 14 13 2 34 34 H 1.09004 * 110.15732 * 265.17009 * 14 13 2 35 35 H 1.09002 * 110.30833 * 240.00056 * 15 14 13 36 36 H 1.08995 * 110.39895 * 117.87392 * 15 14 13 37 37 H 1.09006 * 109.47615 * 300.00550 * 19 18 16 38 38 H 1.09000 * 109.47114 * 60.00062 * 19 18 16 39 39 H 1.07998 * 120.42046 * 0.02562 * 21 20 19 40 40 H 1.08004 * 119.61853 * 180.20935 * 22 21 20 41 41 H 1.07998 * 119.61927 * 180.02562 * 24 23 22 42 42 H 1.08001 * 120.42113 * 179.97438 * 25 24 23 43 43 H 1.08996 * 110.67186 * 81.84477 * 26 13 2 44 44 H 1.09000 * 110.67296 * 318.88080 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0862 0.5392 7 6 4.2303 -1.1927 2.3582 8 7 5.5411 -1.1003 2.4134 9 14 3.3013 -2.1067 3.6966 10 1 3.1697 -3.5370 3.3193 11 1 4.0451 -1.9990 4.9773 12 1 1.9507 -1.5107 3.8568 13 7 2.0196 -0.6926 -1.1995 14 6 1.4367 -2.0492 -1.3088 15 6 1.2419 -2.3401 -2.8084 16 6 1.7214 -1.0615 -3.5333 17 1 2.7548 -1.1695 -3.8626 18 8 0.8698 -0.7531 -4.6385 19 6 1.3526 -1.2316 -5.8955 20 6 0.3821 -0.8518 -6.9840 21 6 -0.6571 -1.6994 -7.3358 22 6 -1.5301 -1.3155 -8.3361 23 7 -1.3772 -0.1634 -8.9593 24 6 -0.3979 0.6653 -8.6543 25 6 0.5108 0.3510 -7.6617 26 6 1.6070 0.0238 -2.4334 27 1 -0.3634 -1.0187 0.1351 28 1 -0.3633 0.6263 0.8147 29 1 -0.3633 0.3923 -0.9498 30 1 1.6055 -0.2618 2.1370 31 1 1.7516 -1.7715 1.2056 32 1 6.0255 -1.5071 3.1488 33 1 0.4750 -2.0794 -0.7966 34 1 2.1126 -2.7848 -0.8726 35 1 0.1897 -2.5253 -3.0243 36 1 1.8458 -3.1955 -3.1110 37 1 2.3253 -0.7861 -6.1046 38 1 1.4506 -2.3165 -5.8579 39 1 -0.7851 -2.6461 -6.8320 40 1 -2.3443 -1.9686 -8.6137 41 1 -0.3048 1.6005 -9.1865 42 1 1.3111 1.0337 -7.4167 43 1 2.2824 0.8539 -2.6405 44 1 0.5797 0.3777 -2.3476 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298524912.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:22 Heat of formation + Delta-G solvation = -19.836897 kcal Electronic energy + Delta-G solvation = -22767.523466 eV Core-core repulsion = 19491.225975 eV Total energy + Delta-G solvation = -3276.297491 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.16281 -40.58548 -38.50785 -35.53918 -34.32568 -33.56882 -32.14408 -30.58917 -29.49341 -29.09990 -27.39891 -24.96196 -24.41164 -23.24519 -22.89915 -21.94256 -20.18931 -18.77836 -18.26758 -17.77221 -17.44072 -16.80000 -16.50226 -16.41801 -16.15079 -15.49793 -15.34503 -14.95721 -14.78765 -14.64673 -14.50048 -14.22630 -14.10615 -13.60613 -13.46213 -13.05624 -12.87749 -12.67344 -12.59591 -12.47376 -12.32533 -12.31501 -11.82239 -11.69680 -11.48690 -11.25789 -11.18902 -10.73615 -10.67883 -10.53966 -10.46462 -10.08819 -9.03965 -8.17611 -6.16922 0.15125 0.19937 1.36962 1.38844 1.49634 2.41710 2.44490 2.95336 3.16085 3.36417 3.57136 3.61885 3.73057 3.79086 3.84671 4.08098 4.12492 4.13208 4.20360 4.26539 4.39847 4.43112 4.45648 4.52251 4.65687 4.66772 4.70666 4.82876 4.87487 4.89420 4.95349 4.99957 5.03818 5.11885 5.18150 5.19202 5.30524 5.36034 5.54644 5.74709 5.75516 6.05205 6.26863 6.31018 6.50522 6.91247 7.00202 7.43877 8.99797 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.036285 B = 0.002789 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.473876 B =10038.224030 C =10125.184339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.090 3.910 3 H 0.062 0.938 4 C -0.002 4.002 5 C -0.491 4.491 6 H 0.035 0.965 7 C -0.003 4.003 8 N -0.958 5.958 9 Si 0.943 3.057 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.247 1.247 13 N -0.514 5.514 14 C 0.033 3.967 15 C -0.140 4.140 16 C 0.095 3.905 17 H 0.080 0.920 18 O -0.382 6.382 19 C 0.097 3.903 20 C -0.057 4.057 21 C -0.156 4.156 22 C 0.085 3.915 23 N -0.511 5.511 24 C 0.085 3.915 25 C -0.158 4.158 26 C 0.034 3.966 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.022 0.978 31 H 0.016 0.984 32 H 0.261 0.739 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.153 0.847 40 H 0.178 0.822 41 H 0.177 0.823 42 H 0.151 0.849 43 H 0.076 0.924 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.317 -1.656 -20.176 24.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.019 4.019 3 H 0.080 0.920 4 C -0.039 4.039 5 C -0.530 4.530 6 H 0.054 0.946 7 C -0.198 4.198 8 N -0.600 5.600 9 Si 0.768 3.232 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.171 1.171 13 N -0.239 5.239 14 C -0.095 4.095 15 C -0.178 4.178 16 C 0.036 3.964 17 H 0.098 0.902 18 O -0.301 6.301 19 C 0.021 3.979 20 C -0.065 4.065 21 C -0.176 4.176 22 C -0.071 4.071 23 N -0.220 5.220 24 C -0.071 4.071 25 C -0.178 4.178 26 C -0.094 4.094 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.171 0.829 40 H 0.195 0.805 41 H 0.194 0.806 42 H 0.168 0.832 43 H 0.095 0.905 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.366 -1.392 -20.658 25.201 hybrid contribution 0.339 -0.624 1.527 1.684 sum -14.028 -2.016 -19.131 23.808 Atomic orbital electron populations 1.22447 0.96473 1.02356 1.02494 1.21603 0.92442 0.97429 0.90377 0.91971 1.19579 0.94707 0.95750 0.93901 1.21289 0.91925 1.32619 1.07141 0.94634 1.25946 0.95504 0.97604 1.00717 1.70083 1.08443 1.47943 1.33567 0.85766 0.79727 0.79388 0.78360 1.19630 1.21509 1.17100 1.64841 1.55508 1.02316 1.01209 1.22849 0.98513 0.91612 0.96521 1.22822 1.02752 0.98345 0.93858 1.22875 0.93790 0.93915 0.85793 0.90172 1.87925 1.48237 1.79080 1.14889 1.21488 0.95258 0.99709 0.81412 1.20240 0.96050 0.94814 0.95404 1.22337 0.94822 1.01757 0.98690 1.23191 0.98548 0.93168 0.92180 1.67697 1.21625 1.04771 1.27950 1.23166 0.89843 0.99127 0.94937 1.22344 1.01445 0.96961 0.97051 1.23235 1.00161 0.96684 0.89271 0.92006 0.91429 0.91585 0.96015 0.96532 0.93022 0.92491 0.92385 0.89688 0.89887 0.90872 0.90591 0.82930 0.80460 0.80559 0.83162 0.90517 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.36 8.49 71.98 0.61 -4.75 16 2 C 0.09 3.48 2.33 44.91 0.10 3.58 16 3 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 4 C 0.00 -0.08 3.47 29.85 0.10 0.02 16 5 C -0.49 -28.35 9.39 25.60 0.24 -28.11 16 6 H 0.04 2.30 7.99 -2.91 -0.02 2.28 16 7 C 0.00 -0.17 5.47 84.65 0.46 0.30 16 8 N -0.96 -61.20 13.96 21.45 0.30 -60.90 16 9 Si 0.94 44.80 27.47 68.60 1.88 46.69 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 12 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 13 N -0.51 -18.95 5.00 -857.43 -4.28 -23.23 16 14 C 0.03 1.05 5.31 86.41 0.46 1.51 16 15 C -0.14 -3.43 6.70 31.47 0.21 -3.21 16 16 C 0.09 2.37 3.55 31.80 0.11 2.48 16 17 H 0.08 1.96 7.82 -2.39 -0.02 1.94 16 18 O -0.38 -8.77 10.08 -148.98 -1.50 -10.27 16 19 C 0.10 1.67 5.95 71.24 0.42 2.10 16 20 C -0.06 -0.99 5.55 -19.67 -0.11 -1.10 16 21 C -0.16 -2.46 9.82 22.36 0.22 -2.24 16 22 C 0.09 1.39 11.18 84.68 0.95 2.34 16 23 N -0.51 -10.03 10.36 -195.84 -2.03 -12.06 16 24 C 0.09 1.43 11.18 84.68 0.95 2.37 16 25 C -0.16 -2.58 9.82 22.36 0.22 -2.37 16 26 C 0.03 1.02 6.13 86.65 0.53 1.56 16 27 H 0.06 1.78 6.16 -2.39 -0.01 1.76 16 28 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.07 1.78 5.90 -2.39 -0.01 1.76 16 30 H 0.02 0.99 7.20 -2.39 -0.02 0.98 16 31 H 0.02 0.75 6.64 -2.39 -0.02 0.73 16 32 H 0.26 15.65 8.31 -92.71 -0.77 14.87 16 33 H 0.06 1.73 5.29 -2.39 -0.01 1.72 16 34 H 0.06 2.12 8.11 -2.38 -0.02 2.10 16 35 H 0.08 1.87 8.08 -2.39 -0.02 1.85 16 36 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.07 1.12 8.07 -2.38 -0.02 1.10 16 38 H 0.08 1.10 8.10 -2.39 -0.02 1.08 16 39 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 40 H 0.18 1.87 8.06 -2.91 -0.02 1.84 16 41 H 0.18 1.97 8.06 -2.91 -0.02 1.95 16 42 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 43 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.06 1.69 5.76 -2.39 -0.01 1.68 16 Total: -1.00 -71.09 350.17 0.77 -70.32 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.92 Total: 14.99 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: 5.48 Total: -25.53 kcal Atomic # 7 Polarization: -90.18 SS G_CDS: -6.01 Total: -96.19 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -1.50 Total: -10.27 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.88 Total: 46.69 kcal Total: -71.09 0.77 -70.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298524912.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.483 kcal (2) G-P(sol) polarization free energy of solvation -71.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds