Wall clock time and date at job start Tue Mar 31 2020 06:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53010 * 109.46853 * 2 1 4 4 O 1.42897 * 109.47448 * 240.00231 * 2 1 3 5 5 C 1.35675 * 116.99742 * 269.99975 * 4 2 1 6 6 C 1.38927 * 119.68266 * 179.72695 * 5 4 2 7 7 C 1.38381 * 119.10715 * 179.75196 * 6 5 4 8 8 C 1.50700 * 120.75152 * 180.23914 * 7 6 5 9 9 N 1.46899 * 109.47269 * 270.27389 * 8 7 6 10 10 C 1.46900 * 111.00236 * 190.00193 * 9 8 7 11 11 C 1.50699 * 109.47064 * 162.85739 * 10 9 8 12 12 H 1.07993 * 120.00291 * 4.65495 * 11 10 9 13 13 C 1.37879 * 119.99991 * 184.65448 * 11 10 9 14 14 N 1.31517 * 120.00040 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00320 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46814 * 59.99899 * 15 13 11 17 17 H 1.48492 * 109.47147 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47022 * 300.00436 * 15 13 11 19 19 C 1.46906 * 110.99759 * 66.05078 * 9 8 7 20 20 C 1.52994 * 117.49734 * 127.41372 * 19 9 8 21 21 C 1.52994 * 117.49934 * 58.79081 * 19 9 8 22 22 C 1.38831 * 118.48872 * 0.51336 * 7 6 5 23 23 C 1.38051 * 119.28691 * 359.72588 * 22 7 6 24 24 N 1.31960 * 120.83573 * 0.02562 * 23 22 7 25 25 H 1.08993 * 109.46672 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47174 * 299.99981 * 1 2 3 27 27 H 1.09000 * 109.46948 * 59.99858 * 1 2 3 28 28 H 1.08997 * 109.47380 * 119.99515 * 2 1 3 29 29 H 1.09000 * 109.47215 * 60.00044 * 3 2 1 30 30 H 1.08996 * 109.46722 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46731 * 299.99913 * 3 2 1 32 32 H 1.07995 * 120.44405 * 0.02562 * 6 5 4 33 33 H 1.08998 * 109.47695 * 30.27746 * 8 7 6 34 34 H 1.09001 * 109.46702 * 150.27920 * 8 7 6 35 35 H 1.08996 * 109.47340 * 282.86108 * 10 9 8 36 36 H 1.08998 * 109.46819 * 42.85955 * 10 9 8 37 37 H 0.97001 * 120.00247 * 180.02562 * 14 13 11 38 38 H 1.08999 * 115.54597 * 273.11830 * 19 9 8 39 39 H 1.09004 * 117.50493 * 359.97438 * 20 19 9 40 40 H 1.08997 * 117.49955 * 145.02283 * 20 19 9 41 41 H 1.09000 * 117.49619 * 214.98430 * 21 19 9 42 42 H 1.09000 * 117.50177 * 359.97146 * 21 19 9 43 43 H 1.08001 * 120.35660 * 179.70766 * 22 7 6 44 44 H 1.07994 * 119.58216 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2118 -2.0108 -1.0652 6 6 2.6690 -2.7223 -2.1674 7 6 2.8793 -4.0849 -2.0491 8 6 3.3798 -4.8918 -3.2193 9 7 2.2365 -5.3845 -3.9992 10 6 2.6681 -6.3652 -5.0042 11 6 1.4747 -7.1491 -5.4860 12 1 0.4841 -6.8902 -5.1425 13 6 1.6474 -8.1968 -6.3654 14 7 2.8538 -8.5125 -6.7834 15 14 0.1681 -9.1682 -6.9633 16 1 -0.7691 -8.2580 -7.6693 17 1 0.6189 -10.2341 -7.8936 18 1 -0.5216 -9.7847 -5.8016 19 6 1.5092 -4.2730 -4.6267 20 6 1.2579 -4.3545 -6.1336 21 6 2.2894 -3.3682 -5.5824 22 6 2.6132 -4.6926 -0.8295 23 6 2.1558 -3.9243 0.2223 24 7 1.9696 -2.6256 0.0804 25 1 -0.3632 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 2.8620 -2.2179 -3.1027 33 1 4.0075 -4.2641 -3.8518 34 1 3.9624 -5.7378 -2.8547 35 1 3.1254 -5.8454 -5.8460 36 1 3.3942 -7.0456 -4.5594 37 1 2.9754 -9.2493 -7.4024 38 1 0.7377 -3.8094 -4.0118 39 1 1.6326 -5.2327 -6.6597 40 1 0.3210 -3.9446 -6.5106 41 1 2.0311 -2.3094 -5.5964 42 1 3.3426 -3.5973 -5.7452 43 1 2.7622 -5.7550 -0.7051 44 1 1.9477 -4.3920 1.1732 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299630425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:16 Heat of formation + Delta-G solvation = 29.558758 kcal Electronic energy + Delta-G solvation = -23273.676385 eV Core-core repulsion = 19999.520851 eV Total energy + Delta-G solvation = -3274.155535 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -40.56995 -38.68157 -37.81066 -33.81483 -33.30670 -32.95212 -31.32690 -29.93061 -27.64010 -27.41201 -25.19956 -23.24712 -22.90379 -22.53843 -21.52820 -20.56864 -19.00626 -17.78608 -16.73719 -16.24416 -15.95079 -15.62171 -15.61540 -14.81535 -14.62147 -14.45001 -14.00541 -13.84635 -13.58014 -13.10521 -12.80222 -12.52593 -12.47572 -12.23366 -12.06951 -12.01478 -11.71853 -11.45541 -11.11632 -11.02580 -10.82526 -10.80896 -10.69156 -10.29490 -9.97669 -9.86703 -9.49577 -9.42162 -9.36422 -9.15455 -8.45937 -8.30592 -7.31021 -6.05234 -4.04918 1.36299 1.49101 3.06724 3.32892 3.37094 3.40510 3.93980 4.39980 4.41965 4.54680 4.73172 4.84445 4.90390 4.99499 5.09170 5.17257 5.30352 5.34468 5.36482 5.43507 5.56336 5.61429 5.65828 5.66583 5.70555 5.76370 5.80156 5.92128 5.99304 6.05715 6.11408 6.15408 6.20823 6.58593 6.63662 6.67873 6.69499 7.06895 7.15178 7.34158 7.40772 7.78437 8.00887 8.03169 8.12950 8.46639 9.02235 9.57516 11.04989 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.025448 B = 0.003557 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.027419 B = 7870.251269 C = 8141.354758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.082 3.918 3 C -0.150 4.150 4 O -0.305 6.305 5 C 0.315 3.685 6 C -0.181 4.181 7 C 0.018 3.982 8 C 0.088 3.912 9 N -0.497 5.497 10 C 0.187 3.813 11 C -0.496 4.496 12 H 0.064 0.936 13 C 0.055 3.945 14 N -0.900 5.900 15 Si 0.897 3.103 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.277 1.277 19 C 0.036 3.964 20 C -0.170 4.170 21 C -0.230 4.230 22 C -0.190 4.190 23 C 0.130 3.870 24 N -0.548 5.548 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.137 0.863 33 H 0.042 0.958 34 H 0.084 0.916 35 H -0.002 1.002 36 H 0.032 0.968 37 H 0.262 0.738 38 H 0.102 0.898 39 H 0.134 0.866 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.137 0.863 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.313 14.836 12.393 19.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.026 3.974 3 C -0.207 4.207 4 O -0.213 6.213 5 C 0.137 3.863 6 C -0.203 4.203 7 C 0.010 3.990 8 C -0.039 4.039 9 N -0.220 5.220 10 C 0.063 3.937 11 C -0.535 4.535 12 H 0.082 0.918 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.725 3.275 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.202 1.202 19 C -0.073 4.073 20 C -0.207 4.207 21 C -0.270 4.270 22 C -0.211 4.211 23 C -0.025 4.025 24 N -0.273 5.273 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.154 0.846 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.016 0.984 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.120 0.880 39 H 0.152 0.848 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.155 0.845 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.797 15.120 13.078 20.007 hybrid contribution -0.057 -0.687 -1.444 1.600 sum -0.853 14.433 11.634 18.558 Atomic orbital electron populations 1.22206 0.95127 1.02942 1.02261 1.22259 0.94253 0.92576 0.88336 1.21902 1.01884 0.94195 1.02759 1.86286 1.80423 1.16325 1.38264 1.19711 0.92384 0.84289 0.89946 1.20980 1.06700 0.94002 0.98571 1.20165 0.91671 0.92161 0.95030 1.21094 0.93265 0.97381 0.92175 1.62246 1.22131 1.11026 1.26633 1.19895 0.96632 0.88955 0.88236 1.21055 0.93628 1.13692 1.25106 0.91779 1.24965 0.95868 0.97166 0.96638 1.69941 1.20916 1.29627 1.33460 0.86575 0.82777 0.79607 0.78578 1.20229 1.21464 1.20211 1.22521 0.99759 0.94008 0.91027 1.23529 0.98936 1.01728 0.96486 1.23343 0.98001 0.96407 1.09226 1.21906 1.03938 1.01678 0.93536 1.22282 0.93794 0.87726 0.98679 1.67166 1.22478 1.12808 1.24817 0.91903 0.91401 0.92119 0.89441 0.90738 0.91942 0.91724 0.84562 0.94016 0.89745 0.98402 0.94967 0.92854 0.88010 0.84805 0.90139 0.89996 0.89642 0.84465 0.82792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 9.53 37.16 0.35 -1.35 16 2 C 0.08 0.91 3.11 -26.72 -0.08 0.83 16 3 C -0.15 -1.27 9.56 37.16 0.36 -0.92 16 4 O -0.30 -4.29 9.76 -18.73 -0.18 -4.47 16 5 C 0.32 4.74 7.45 -17.12 -0.13 4.61 16 6 C -0.18 -2.78 8.91 -39.27 -0.35 -3.13 16 7 C 0.02 0.28 5.06 -104.35 -0.53 -0.25 16 8 C 0.09 1.53 5.05 -4.98 -0.03 1.51 16 9 N -0.50 -10.29 4.66 -229.53 -1.07 -11.36 16 10 C 0.19 4.60 4.27 -4.98 -0.02 4.58 16 11 C -0.50 -13.29 6.86 -34.44 -0.24 -13.53 16 12 H 0.06 1.75 7.80 -52.49 -0.41 1.34 16 13 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 14 N -0.90 -25.81 13.29 55.43 0.74 -25.08 16 15 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 C 0.04 0.70 4.82 -67.72 -0.33 0.37 16 20 C -0.17 -3.35 8.87 -26.74 -0.24 -3.58 16 21 C -0.23 -4.01 8.80 -26.74 -0.24 -4.24 16 22 C -0.19 -2.69 9.81 -39.43 -0.39 -3.07 16 23 C 0.13 1.70 11.18 -17.56 -0.20 1.50 16 24 N -0.55 -7.88 8.65 -13.33 -0.12 -7.99 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.09 1.02 6.98 -51.93 -0.36 0.65 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.14 2.05 7.58 -52.49 -0.40 1.65 16 33 H 0.04 0.71 6.82 -51.93 -0.35 0.36 16 34 H 0.08 1.43 7.81 -51.93 -0.41 1.03 16 35 H 0.00 -0.04 6.03 -51.93 -0.31 -0.36 16 36 H 0.03 0.85 7.78 -51.93 -0.40 0.45 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.10 1.93 8.12 -51.93 -0.42 1.50 16 39 H 0.13 3.11 4.91 -51.93 -0.25 2.86 16 40 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 41 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.09 1.54 7.14 -51.93 -0.37 1.17 16 43 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 44 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 356.48 15.07 5.37 5.37 Total: -1.00 -28.99 356.48 -9.48 -38.46 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -7.06 Total: 4.09 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -2.14 Total: -15.27 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: -0.45 Total: -44.43 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.18 Total: -4.47 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.99 -9.48 -38.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299630425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.023 kcal (2) G-P(sol) polarization free energy of solvation -28.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds