Wall clock time and date at job start Tue Mar 31 2020 08:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46863 * 2 1 4 4 C 1.50700 * 109.46818 * 119.99805 * 2 1 3 5 5 C 1.38134 * 120.03981 * 305.03546 * 4 2 1 6 6 C 1.38254 * 120.07401 * 180.02562 * 5 4 2 7 7 C 1.38305 * 120.14350 * 359.96045 * 6 5 4 8 8 C 1.38090 * 120.06591 * 0.02562 * 7 6 5 9 9 C 1.38854 * 120.03640 * 125.01663 * 4 2 1 10 10 N 1.39926 * 120.06864 * 0.27188 * 9 4 2 11 11 C 1.34772 * 120.00191 * 204.59740 * 10 9 4 12 12 O 1.21284 * 119.99948 * 5.64730 * 11 10 9 13 13 C 1.50699 * 120.00270 * 185.63924 * 11 10 9 14 14 H 1.09006 * 109.47477 * 300.00257 * 13 11 10 15 15 C 1.53000 * 109.46871 * 60.00353 * 13 11 10 16 16 N 1.46494 * 109.47381 * 180.02562 * 13 11 10 17 17 C 1.46507 * 119.99891 * 300.00221 * 16 13 11 18 18 C 1.36933 * 120.00282 * 120.00229 * 16 13 11 19 19 H 1.08000 * 120.00263 * 34.62407 * 18 16 13 20 20 C 1.38817 * 120.00082 * 214.62571 * 18 16 13 21 21 N 1.31617 * 120.00042 * 5.16354 * 20 18 16 22 22 Si 1.86801 * 120.00039 * 185.17145 * 20 18 16 23 23 H 1.48501 * 109.47096 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47506 * 119.99631 * 22 20 18 25 25 H 1.48506 * 109.46631 * 239.99705 * 22 20 18 26 26 H 1.08995 * 109.47263 * 300.00050 * 1 2 3 27 27 H 1.08995 * 109.47098 * 60.00656 * 1 2 3 28 28 H 1.09004 * 109.47252 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46759 * 239.99234 * 2 1 3 30 30 H 1.09004 * 109.46933 * 299.99446 * 3 2 1 31 31 H 1.08995 * 109.47222 * 59.99924 * 3 2 1 32 32 H 1.09008 * 109.46661 * 180.02562 * 3 2 1 33 33 H 1.08002 * 119.96140 * 359.97438 * 5 4 2 34 34 H 1.08002 * 119.93134 * 179.97438 * 6 5 4 35 35 H 1.07997 * 119.96649 * 180.02562 * 7 6 5 36 36 H 1.08001 * 120.03491 * 179.97438 * 8 7 6 37 37 H 0.97001 * 119.99765 * 24.59671 * 10 9 4 38 38 H 1.08999 * 109.47598 * 60.00192 * 15 13 11 39 39 H 1.09002 * 109.47331 * 180.02562 * 15 13 11 40 40 H 1.09003 * 109.47211 * 299.99619 * 15 13 11 41 41 H 1.08997 * 109.47162 * 85.06361 * 17 16 13 42 42 H 1.09001 * 109.47079 * 205.05958 * 17 16 13 43 43 H 1.09001 * 109.47012 * 325.05625 * 17 16 13 44 44 H 0.96997 * 120.00245 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6155 -0.3028 2.4828 6 6 2.0763 -0.9536 3.6122 7 6 2.9549 -2.0150 3.4923 8 6 3.3751 -2.4275 2.2432 9 6 2.9143 -1.7757 1.1067 10 7 3.3426 -2.1877 -0.1601 11 6 3.7645 -3.4535 -0.3501 12 8 3.6773 -4.2631 0.5487 13 6 4.3444 -3.8630 -1.6794 14 1 3.6007 -3.7130 -2.4620 15 6 5.5801 -3.0124 -1.9804 16 7 4.7242 -5.2770 -1.6318 17 6 5.7159 -5.7367 -0.6562 18 6 4.1523 -6.1692 -2.4990 19 1 3.8989 -5.8603 -3.5024 20 6 3.8983 -7.4707 -2.0885 21 7 4.1121 -7.8198 -0.8376 22 14 3.2530 -8.7267 -3.3115 23 1 3.0982 -8.0870 -4.6427 24 1 4.2115 -9.8564 -3.4131 25 1 1.9359 -9.2348 -2.8506 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5140 -0.8899 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9563 0.8899 32 1 3.1300 1.4424 -0.0005 33 1 0.9296 0.5258 2.5798 34 1 1.7492 -0.6328 4.5902 35 1 3.3127 -2.5216 4.3764 36 1 4.0616 -3.2561 2.1502 37 1 3.3357 -1.5623 -0.9015 38 1 6.3239 -3.1623 -1.1979 39 1 5.9993 -3.3082 -2.9421 40 1 5.2971 -1.9603 -2.0160 41 1 5.2222 -5.9462 0.2926 42 1 6.1947 -6.6439 -1.0248 43 1 6.4688 -4.9620 -0.5109 44 1 3.9349 -8.7293 -0.5508 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299635028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:49:10 Heat of formation + Delta-G solvation = 9.848841 kcal Electronic energy + Delta-G solvation = -23828.668882 eV Core-core repulsion = 20553.658661 eV Total energy + Delta-G solvation = -3275.010221 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 3.62 seconds Orbital eigenvalues (eV) -40.37082 -38.47339 -35.52338 -35.31394 -34.13477 -32.14713 -29.88319 -29.55219 -28.45466 -27.23045 -25.92999 -24.27885 -23.60341 -22.71197 -21.05470 -19.91195 -19.22634 -17.61811 -16.89541 -16.07264 -15.73221 -15.09041 -14.98433 -14.47371 -14.12041 -13.77191 -13.69622 -13.64628 -13.50725 -13.15802 -12.77678 -12.49064 -12.30398 -12.09263 -12.02074 -11.86725 -11.65091 -11.39979 -11.21677 -10.86699 -10.81481 -10.72314 -10.67469 -10.60293 -10.40051 -10.04526 -9.95805 -9.85066 -8.94270 -8.53884 -8.44265 -7.64696 -6.58810 -5.74690 -3.33178 1.54109 1.65502 3.34769 3.35597 3.43091 3.45286 3.55253 4.08441 4.46308 4.65216 4.75863 5.11549 5.17361 5.22751 5.30719 5.36081 5.38727 5.49734 5.51751 5.56559 5.71520 5.74747 5.84075 5.85781 5.90584 5.91311 5.98871 6.15114 6.16647 6.17019 6.29279 6.44660 6.59596 6.66662 6.70959 6.78989 6.88127 6.93478 7.38222 7.41080 7.79232 7.86212 7.97351 8.44005 8.87497 9.22541 9.80358 10.36292 11.28714 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.019885 B = 0.004299 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.739558 B = 6511.141871 C = 6799.168124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.054 4.054 3 C -0.142 4.142 4 C -0.123 4.123 5 C -0.097 4.097 6 C -0.152 4.152 7 C -0.103 4.103 8 C -0.133 4.133 9 C 0.169 3.831 10 N -0.685 5.685 11 C 0.482 3.518 12 O -0.486 6.486 13 C 0.155 3.845 14 H 0.088 0.912 15 C -0.156 4.156 16 N -0.565 5.565 17 C 0.160 3.840 18 C -0.276 4.276 19 H 0.066 0.934 20 C 0.019 3.981 21 N -0.883 5.883 22 Si 0.902 3.098 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.288 1.288 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.146 0.854 37 H 0.402 0.598 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.046 0.954 41 H 0.039 0.961 42 H 0.046 0.954 43 H -0.008 1.008 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.919 18.232 2.997 18.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.072 4.072 3 C -0.199 4.199 4 C -0.125 4.125 5 C -0.115 4.115 6 C -0.171 4.171 7 C -0.121 4.121 8 C -0.153 4.153 9 C 0.073 3.927 10 N -0.332 5.332 11 C 0.268 3.732 12 O -0.357 6.357 13 C 0.042 3.958 14 H 0.106 0.894 15 C -0.215 4.215 16 N -0.285 5.285 17 C 0.016 3.984 18 C -0.406 4.406 19 H 0.084 0.916 20 C -0.182 4.182 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.201 1.201 24 H -0.214 1.214 25 H -0.215 1.215 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.164 0.836 37 H 0.238 0.762 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.011 0.989 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.905 17.313 3.656 17.931 hybrid contribution -0.578 -0.488 -0.713 1.040 sum -3.483 16.825 2.943 17.432 Atomic orbital electron populations 1.21833 0.94316 1.02180 1.01574 1.19986 0.96146 0.95649 0.95441 1.21857 1.01172 0.95182 1.01732 1.19517 0.99012 0.98729 0.95289 1.20644 0.99744 0.99686 0.91462 1.20970 1.00280 0.97773 0.98101 1.21032 0.97537 0.96464 0.97106 1.21490 1.01598 1.01459 0.90770 1.17829 0.94354 0.94568 0.85969 1.44468 1.65481 1.13946 1.09326 1.23543 0.76715 0.79743 0.93207 1.90655 1.51214 1.49865 1.43940 1.20634 0.95173 0.88338 0.91677 0.89384 1.22188 0.99110 0.97672 1.02531 1.43688 1.43995 1.01144 1.39631 1.20829 0.88943 0.94930 0.93717 1.19150 1.38001 0.91397 0.92072 0.91591 1.25437 0.98181 0.99127 0.95490 1.70071 1.49742 1.17951 1.14583 0.86247 0.78508 0.81467 0.80656 1.20064 1.21440 1.21499 0.92532 0.92544 0.92423 0.90903 0.92513 0.92494 0.92595 0.86454 0.86681 0.86275 0.83640 0.76192 0.92637 0.91525 0.93492 0.94292 0.93513 0.98915 0.93567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.95 37.16 0.33 -1.07 16 2 C -0.05 -0.57 2.98 -91.77 -0.27 -0.85 16 3 C -0.14 -1.24 9.05 37.16 0.34 -0.90 16 4 C -0.12 -1.64 4.80 -104.43 -0.50 -2.14 16 5 C -0.10 -1.19 8.75 -39.61 -0.35 -1.54 16 6 C -0.15 -1.94 10.04 -39.55 -0.40 -2.34 16 7 C -0.10 -1.51 10.04 -39.61 -0.40 -1.90 16 8 C -0.13 -2.32 8.72 -39.39 -0.34 -2.66 16 9 C 0.17 2.74 6.41 -83.69 -0.54 2.20 16 10 N -0.68 -10.96 4.91 -9.86 -0.05 -11.01 16 11 C 0.48 9.83 6.86 -10.99 -0.08 9.76 16 12 O -0.49 -12.13 11.78 5.55 0.07 -12.07 16 13 C 0.16 3.14 3.13 -69.09 -0.22 2.93 16 14 H 0.09 1.70 7.89 -51.93 -0.41 1.29 16 15 C -0.16 -2.50 9.06 37.16 0.34 -2.17 16 16 N -0.56 -14.34 2.55 -174.81 -0.44 -14.78 16 17 C 0.16 4.12 7.96 59.85 0.48 4.59 16 18 C -0.28 -7.61 9.45 -15.06 -0.14 -7.75 16 19 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 20 C 0.02 0.55 5.18 -17.43 -0.09 0.46 16 21 N -0.88 -26.54 11.13 55.49 0.62 -25.92 16 22 Si 0.90 21.80 29.56 -169.99 -5.02 16.77 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 26 H 0.06 0.51 7.13 -51.93 -0.37 0.14 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.78 5.98 -51.93 -0.31 0.47 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.47 7.70 -51.93 -0.40 0.07 16 32 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 33 H 0.12 1.17 7.10 -52.49 -0.37 0.79 16 34 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 36 H 0.15 2.93 5.79 -52.49 -0.30 2.63 16 37 H 0.40 5.10 6.50 -40.82 -0.27 4.84 16 38 H 0.05 0.94 6.69 -51.93 -0.35 0.59 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.59 7.70 -51.93 -0.40 0.19 16 41 H 0.04 1.12 6.56 -51.93 -0.34 0.78 16 42 H 0.05 1.27 7.27 -51.93 -0.38 0.89 16 43 H -0.01 -0.17 6.45 -51.93 -0.33 -0.51 16 44 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 348.35 15.07 5.25 5.25 Total: -1.00 -32.83 348.35 -8.16 -40.99 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -6.74 Total: 4.14 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -1.84 Total: -3.37 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 0.12 Total: -51.71 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.07 Total: -12.07 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.83 -8.16 -40.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299635028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.838 kcal (2) G-P(sol) polarization free energy of solvation -32.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.62 seconds