Wall clock time and date at job start Tue Mar 31 2020 08:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46863 * 2 1 4 4 C 1.50700 * 109.46818 * 119.99805 * 2 1 3 5 5 C 1.38134 * 120.03981 * 305.03546 * 4 2 1 6 6 C 1.38254 * 120.07401 * 180.02562 * 5 4 2 7 7 C 1.38305 * 120.14350 * 359.96045 * 6 5 4 8 8 C 1.38090 * 120.06591 * 0.02562 * 7 6 5 9 9 C 1.38854 * 120.03640 * 125.01663 * 4 2 1 10 10 N 1.39926 * 120.06864 * 0.27188 * 9 4 2 11 11 C 1.34772 * 120.00191 * 204.59740 * 10 9 4 12 12 O 1.21284 * 119.99948 * 5.64730 * 11 10 9 13 13 C 1.50699 * 120.00270 * 185.63924 * 11 10 9 14 14 H 1.09006 * 109.47477 * 300.00257 * 13 11 10 15 15 C 1.53000 * 109.46871 * 60.00353 * 13 11 10 16 16 N 1.46494 * 109.47381 * 180.02562 * 13 11 10 17 17 C 1.46507 * 119.99891 * 300.00221 * 16 13 11 18 18 C 1.36933 * 120.00282 * 120.00229 * 16 13 11 19 19 H 1.08000 * 120.00263 * 34.62407 * 18 16 13 20 20 C 1.38817 * 120.00082 * 214.62571 * 18 16 13 21 21 N 1.31617 * 120.00042 * 5.16354 * 20 18 16 22 22 Si 1.86801 * 120.00039 * 185.17145 * 20 18 16 23 23 H 1.48501 * 109.47096 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47506 * 119.99631 * 22 20 18 25 25 H 1.48506 * 109.46631 * 239.99705 * 22 20 18 26 26 H 1.08995 * 109.47263 * 300.00050 * 1 2 3 27 27 H 1.08995 * 109.47098 * 60.00656 * 1 2 3 28 28 H 1.09004 * 109.47252 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46759 * 239.99234 * 2 1 3 30 30 H 1.09004 * 109.46933 * 299.99446 * 3 2 1 31 31 H 1.08995 * 109.47222 * 59.99924 * 3 2 1 32 32 H 1.09008 * 109.46661 * 180.02562 * 3 2 1 33 33 H 1.08002 * 119.96140 * 359.97438 * 5 4 2 34 34 H 1.08002 * 119.93134 * 179.97438 * 6 5 4 35 35 H 1.07997 * 119.96649 * 180.02562 * 7 6 5 36 36 H 1.08001 * 120.03491 * 179.97438 * 8 7 6 37 37 H 0.97001 * 119.99765 * 24.59671 * 10 9 4 38 38 H 1.08999 * 109.47598 * 60.00192 * 15 13 11 39 39 H 1.09002 * 109.47331 * 180.02562 * 15 13 11 40 40 H 1.09003 * 109.47211 * 299.99619 * 15 13 11 41 41 H 1.08997 * 109.47162 * 85.06361 * 17 16 13 42 42 H 1.09001 * 109.47079 * 205.05958 * 17 16 13 43 43 H 1.09001 * 109.47012 * 325.05625 * 17 16 13 44 44 H 0.96997 * 120.00245 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6155 -0.3028 2.4828 6 6 2.0763 -0.9536 3.6122 7 6 2.9549 -2.0150 3.4923 8 6 3.3751 -2.4275 2.2432 9 6 2.9143 -1.7757 1.1067 10 7 3.3426 -2.1877 -0.1601 11 6 3.7645 -3.4535 -0.3501 12 8 3.6773 -4.2631 0.5487 13 6 4.3444 -3.8630 -1.6794 14 1 3.6007 -3.7130 -2.4620 15 6 5.5801 -3.0124 -1.9804 16 7 4.7242 -5.2770 -1.6318 17 6 5.7159 -5.7367 -0.6562 18 6 4.1523 -6.1692 -2.4990 19 1 3.8989 -5.8603 -3.5024 20 6 3.8983 -7.4707 -2.0885 21 7 4.1121 -7.8198 -0.8376 22 14 3.2530 -8.7267 -3.3115 23 1 3.0982 -8.0870 -4.6427 24 1 4.2115 -9.8564 -3.4131 25 1 1.9359 -9.2348 -2.8506 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5140 -0.8899 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9563 0.8899 32 1 3.1300 1.4424 -0.0005 33 1 0.9296 0.5258 2.5798 34 1 1.7492 -0.6328 4.5902 35 1 3.3127 -2.5216 4.3764 36 1 4.0616 -3.2561 2.1502 37 1 3.3357 -1.5623 -0.9015 38 1 6.3239 -3.1623 -1.1979 39 1 5.9993 -3.3082 -2.9421 40 1 5.2971 -1.9603 -2.0160 41 1 5.2222 -5.9462 0.2926 42 1 6.1947 -6.6439 -1.0248 43 1 6.4688 -4.9620 -0.5109 44 1 3.9349 -8.7293 -0.5508 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299635028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:49:09 Heat of formation + Delta-G solvation = -9.762547 kcal Electronic energy + Delta-G solvation = -23829.519296 eV Core-core repulsion = 20553.658661 eV Total energy + Delta-G solvation = -3275.860634 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.70795 -39.84734 -37.30356 -36.30431 -35.57537 -34.03280 -31.45258 -30.74426 -29.78577 -28.01178 -27.92932 -25.90694 -24.72126 -24.21892 -22.54224 -20.92332 -20.70995 -19.04356 -18.70719 -17.63550 -17.08540 -16.78476 -16.26539 -15.78150 -15.60908 -15.29880 -14.93042 -14.77599 -14.60995 -14.54031 -14.38155 -13.98798 -13.50219 -13.37531 -13.10432 -12.95046 -12.88945 -12.79059 -12.74018 -12.62465 -12.38776 -12.37077 -12.00745 -11.91286 -11.81762 -11.70429 -11.52877 -11.28169 -10.72949 -10.43902 -9.63071 -8.88707 -8.64142 -7.86026 -5.48148 0.39781 0.50302 1.44463 1.45381 1.56759 1.83170 2.16939 2.48237 2.93345 3.31126 3.59271 3.72863 3.87712 3.93165 4.24474 4.28837 4.34434 4.35073 4.41072 4.44174 4.55558 4.64115 4.76179 4.82896 4.88001 4.94638 4.99903 5.02724 5.05020 5.10998 5.20510 5.24168 5.33833 5.40403 5.45056 5.48162 5.60512 5.63137 5.66044 5.68916 5.78840 6.19281 6.32530 6.59574 7.11349 7.36286 7.79546 8.30313 9.16917 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.019885 B = 0.004299 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.739558 B = 6511.141871 C = 6799.168124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.055 4.055 3 C -0.137 4.137 4 C -0.113 4.113 5 C -0.095 4.095 6 C -0.142 4.142 7 C -0.116 4.116 8 C -0.163 4.163 9 C 0.139 3.861 10 N -0.664 5.664 11 C 0.483 3.517 12 O -0.541 6.541 13 C 0.149 3.851 14 H 0.101 0.899 15 C -0.142 4.142 16 N -0.584 5.584 17 C 0.182 3.818 18 C -0.281 4.281 19 H 0.079 0.921 20 C -0.043 4.043 21 N -0.927 5.927 22 Si 0.971 3.029 23 H -0.255 1.255 24 H -0.289 1.289 25 H -0.296 1.296 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.035 0.965 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.153 0.847 34 H 0.148 0.852 35 H 0.128 0.872 36 H 0.106 0.894 37 H 0.419 0.581 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.089 0.911 41 H -0.002 1.002 42 H 0.020 0.980 43 H 0.019 0.981 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.370 21.860 1.874 22.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.074 4.074 3 C -0.194 4.194 4 C -0.116 4.116 5 C -0.113 4.113 6 C -0.160 4.160 7 C -0.135 4.135 8 C -0.183 4.183 9 C 0.044 3.956 10 N -0.313 5.313 11 C 0.270 3.730 12 O -0.416 6.416 13 C 0.037 3.963 14 H 0.119 0.881 15 C -0.201 4.201 16 N -0.305 5.305 17 C 0.037 3.963 18 C -0.411 4.411 19 H 0.097 0.903 20 C -0.240 4.240 21 N -0.570 5.570 22 Si 0.798 3.202 23 H -0.179 1.179 24 H -0.216 1.216 25 H -0.223 1.223 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.170 0.830 34 H 0.166 0.834 35 H 0.146 0.854 36 H 0.124 0.876 37 H 0.259 0.741 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.017 0.983 42 H 0.039 0.961 43 H 0.037 0.963 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.365 21.042 2.496 21.635 hybrid contribution -0.169 -1.418 -0.290 1.457 sum -4.534 19.624 2.206 20.262 Atomic orbital electron populations 1.21834 0.93464 1.01265 1.03200 1.20089 0.96769 0.96715 0.93816 1.21826 1.00951 0.93575 1.03095 1.19865 0.97297 0.97225 0.97204 1.21093 0.99445 1.00094 0.90664 1.21366 0.98473 0.96198 1.00009 1.21215 0.98349 0.97572 0.96348 1.21352 1.02589 1.01489 0.92897 1.17979 0.96290 0.96180 0.85140 1.43951 1.64360 1.12702 1.10242 1.23257 0.76506 0.80677 0.92559 1.90670 1.53641 1.51808 1.45475 1.20877 0.97416 0.86222 0.91790 0.88132 1.22068 0.96559 0.99285 1.02208 1.43816 1.44445 1.03034 1.39211 1.20423 0.89222 0.94656 0.91997 1.19603 1.36435 0.92046 0.93013 0.90349 1.26275 0.99119 1.01452 0.97137 1.70285 1.52013 1.17862 1.16844 0.85160 0.77071 0.78776 0.79150 1.17911 1.21567 1.22291 0.91223 0.90717 0.94568 0.91205 0.90764 0.91590 0.92954 0.82985 0.83379 0.85384 0.87569 0.74138 0.93818 0.90924 0.89196 0.98322 0.96075 0.96319 0.94371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 8.95 71.98 0.64 -1.66 16 2 C -0.06 -1.00 2.98 -11.54 -0.03 -1.04 16 3 C -0.14 -1.82 9.05 71.98 0.65 -1.17 16 4 C -0.11 -2.77 4.80 -19.74 -0.09 -2.87 16 5 C -0.09 -2.01 8.75 22.25 0.19 -1.82 16 6 C -0.14 -3.24 10.04 22.29 0.22 -3.02 16 7 C -0.12 -3.41 10.04 22.25 0.22 -3.19 16 8 C -0.16 -5.94 8.72 22.39 0.20 -5.74 16 9 C 0.14 4.50 6.41 38.15 0.24 4.74 16 10 N -0.66 -21.05 4.91 -303.51 -1.49 -22.54 16 11 C 0.48 20.21 6.86 87.66 0.60 20.81 16 12 O -0.54 -28.77 11.78 -3.04 -0.04 -28.81 16 13 C 0.15 5.98 3.13 44.25 0.14 6.12 16 14 H 0.10 3.75 7.89 -2.38 -0.02 3.73 16 15 C -0.14 -4.32 9.06 71.98 0.65 -3.66 16 16 N -0.58 -30.36 2.55 -706.97 -1.80 -32.16 16 17 C 0.18 9.86 7.96 127.77 1.02 10.88 16 18 C -0.28 -15.65 9.45 84.04 0.79 -14.86 16 19 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 20 C -0.04 -2.48 5.18 84.86 0.44 -2.04 16 21 N -0.93 -58.60 11.13 21.65 0.24 -58.35 16 22 Si 0.97 45.81 29.56 68.60 2.03 47.84 16 23 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 25 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 26 H 0.07 0.96 7.13 -2.39 -0.02 0.94 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.07 1.30 5.98 -2.39 -0.01 1.28 16 30 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.07 0.77 7.70 -2.39 -0.02 0.76 16 32 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.15 2.21 7.10 -2.91 -0.02 2.19 16 34 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 35 H 0.13 3.36 8.06 -2.91 -0.02 3.34 16 36 H 0.11 4.71 5.79 -2.91 -0.02 4.69 16 37 H 0.42 9.87 6.50 -92.71 -0.60 9.27 16 38 H 0.04 1.43 6.69 -2.39 -0.02 1.41 16 39 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.09 1.94 7.70 -2.39 -0.02 1.92 16 41 H 0.00 -0.10 6.56 -2.39 -0.02 -0.12 16 42 H 0.02 1.19 7.27 -2.39 -0.02 1.17 16 43 H 0.02 0.88 6.45 -2.39 -0.02 0.86 16 44 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -76.87 348.35 5.23 -71.64 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.39 Total: 20.90 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 5.89 Total: 1.47 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -3.05 Total: -113.05 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.04 Total: -28.81 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -76.87 5.23 -71.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299635028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.881 kcal (2) G-P(sol) polarization free energy of solvation -76.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds