Wall clock time and date at job start Tue Mar 31 2020 08:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31519 * 119.99723 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47147 * 90.00197 * 8 6 4 10 10 H 1.48499 * 109.46797 * 209.99607 * 8 6 4 11 11 H 1.48500 * 109.47032 * 329.99738 * 8 6 4 12 12 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 13 13 C 1.34781 * 119.99874 * 85.00543 * 12 2 1 14 14 O 1.21278 * 120.00033 * 359.97438 * 13 12 2 15 15 C 1.50703 * 120.00101 * 179.97438 * 13 12 2 16 16 C 1.52996 * 109.47006 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.47006 * 179.97438 * 16 15 13 18 18 C 1.38284 * 119.92279 * 269.72878 * 17 16 15 19 19 C 1.38108 * 120.07204 * 179.72491 * 18 17 16 20 20 C 1.38914 * 119.92193 * 0.54355 * 19 18 17 21 21 N 1.39678 * 120.07073 * 179.70066 * 20 19 18 22 22 C 1.46502 * 119.99733 * 180.02562 * 21 20 19 23 23 C 1.46503 * 120.00150 * 0.02923 * 21 20 19 24 24 C 1.38909 * 119.85308 * 359.73248 * 20 19 18 25 25 C 1.38105 * 119.92412 * 359.97438 * 24 20 19 26 26 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 27 27 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 29 29 H 0.97003 * 119.99231 * 179.97438 * 7 6 4 30 30 H 0.97002 * 120.00410 * 264.99761 * 12 2 1 31 31 H 1.09002 * 109.46880 * 299.99754 * 15 13 12 32 32 H 1.09003 * 109.46851 * 59.99965 * 15 13 12 33 33 H 1.09002 * 109.47281 * 299.99730 * 16 15 13 34 34 H 1.08997 * 109.47550 * 59.99777 * 16 15 13 35 35 H 1.07994 * 119.96712 * 359.97438 * 18 17 16 36 36 H 1.08000 * 120.04240 * 180.26983 * 19 18 17 37 37 H 1.08992 * 109.47328 * 60.00252 * 22 21 20 38 38 H 1.09002 * 109.46966 * 180.02562 * 22 21 20 39 39 H 1.09002 * 109.47123 * 300.00460 * 22 21 20 40 40 H 1.08996 * 109.46991 * 89.99669 * 23 21 20 41 41 H 1.09004 * 109.46668 * 209.99544 * 23 21 20 42 42 H 1.08994 * 109.46942 * 329.99447 * 23 21 20 43 43 H 1.07995 * 120.03837 * 180.02562 * 24 20 19 44 44 H 1.08000 * 119.96148 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5460 4.4124 10 1 1.3431 -0.9492 5.1120 11 1 2.4857 -2.5663 3.7119 12 7 2.0183 -0.6907 -1.1961 13 6 2.1470 -0.0183 -2.3572 14 8 1.8583 1.1583 -2.4117 15 6 2.6499 -0.7286 -3.5875 16 6 2.7007 0.2543 -4.7588 17 6 3.2041 -0.4559 -5.9890 18 6 4.5593 -0.4855 -6.2624 19 6 5.0245 -1.1402 -7.3859 20 6 4.1284 -1.7598 -8.2477 21 7 4.5950 -2.4176 -9.3882 22 6 3.6484 -3.0700 -10.2962 23 6 6.0309 -2.4551 -9.6762 24 6 2.7672 -1.7232 -7.9731 25 6 2.3093 -1.0719 -6.8446 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.7090 1.1614 3.4844 30 1 2.2490 -1.6319 -1.1526 31 1 3.6492 -1.1205 -3.3979 32 1 1.9776 -1.5509 -3.8325 33 1 1.7012 0.6458 -4.9483 34 1 3.3726 1.0769 -4.5141 35 1 5.2551 0.0005 -5.5945 36 1 6.0835 -1.1668 -7.5966 37 1 2.9501 -2.3296 -10.6864 38 1 4.1934 -3.5267 -11.1224 39 1 3.0974 -3.8394 -9.7553 40 1 6.4720 -3.3361 -9.2101 41 1 6.1840 -2.4994 -10.7545 42 1 6.5048 -1.5578 -9.2785 43 1 2.0679 -2.2043 -8.6408 44 1 1.2511 -1.0427 -6.6308 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299653038.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:56 Heat of formation + Delta-G solvation = -18.852855 kcal Electronic energy + Delta-G solvation = -22034.252279 eV Core-core repulsion = 18757.997459 eV Total energy + Delta-G solvation = -3276.254820 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.82089 -38.77222 -36.74003 -34.77945 -33.04424 -32.28327 -31.20713 -29.65013 -28.42354 -28.35761 -25.44793 -25.17909 -23.08655 -22.40298 -20.92228 -20.16650 -19.25433 -17.52022 -17.01725 -16.07913 -15.76147 -15.34561 -15.16172 -14.93404 -14.87922 -14.19878 -14.04354 -13.88666 -13.58251 -13.07891 -12.98802 -12.69740 -12.57633 -12.41312 -12.28006 -12.24065 -11.73243 -11.61472 -11.15858 -11.06016 -10.98200 -10.92375 -10.67649 -10.55544 -10.26579 -10.19594 -9.78606 -9.00831 -8.93320 -8.88973 -8.50384 -7.82299 -7.35661 -6.08686 -4.17671 1.42801 1.55266 2.89389 3.26717 3.33123 3.35184 3.52797 3.81540 4.22363 4.44906 4.64900 4.69808 4.92169 4.93529 5.01291 5.10730 5.23336 5.25542 5.33865 5.34955 5.35919 5.40755 5.45452 5.59534 5.65951 5.78552 5.99344 6.01261 6.09007 6.28140 6.41921 6.44364 6.82319 6.82873 6.87869 7.02367 7.04051 7.20952 7.33902 7.54007 7.62813 7.74896 7.97185 8.20048 8.75593 8.83795 9.23369 9.50297 10.97283 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.033342 B = 0.002417 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.590356 B =11581.532260 C =11895.377849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.712 5.712 13 C 0.499 3.501 14 O -0.558 6.558 15 C -0.135 4.135 16 C -0.057 4.057 17 C -0.130 4.130 18 C -0.069 4.069 19 C -0.195 4.195 20 C 0.203 3.797 21 N -0.643 5.643 22 C 0.098 3.902 23 C 0.095 3.905 24 C -0.193 4.193 25 C -0.069 4.069 26 H 0.014 0.986 27 H 0.025 0.975 28 H 0.089 0.911 29 H 0.264 0.736 30 H 0.388 0.612 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.046 0.954 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.118 0.882 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.146 -8.245 -24.169 26.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.065 0.935 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.360 5.360 13 C 0.284 3.716 14 O -0.438 6.438 15 C -0.175 4.175 16 C -0.095 4.095 17 C -0.132 4.132 18 C -0.088 4.088 19 C -0.217 4.217 20 C 0.102 3.898 21 N -0.356 5.356 22 C -0.045 4.045 23 C -0.049 4.049 24 C -0.215 4.215 25 C -0.088 4.088 26 H 0.033 0.967 27 H 0.044 0.956 28 H 0.108 0.892 29 H 0.074 0.926 30 H 0.220 0.780 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.136 0.864 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.906 -7.370 -24.191 26.215 hybrid contribution 0.436 -1.056 0.849 1.423 sum 7.342 -8.425 -23.342 25.880 Atomic orbital electron populations 1.22068 0.98574 0.99019 1.00839 1.18716 0.90982 0.93981 0.80210 0.93470 1.21236 1.32290 1.13148 0.90399 0.92125 1.24903 0.94860 0.95000 0.99065 1.69913 1.35928 1.22506 1.23795 0.86449 0.78581 0.79834 0.82226 1.20584 1.21098 1.19875 1.46548 1.65215 1.13527 1.10692 1.20548 0.78576 0.87576 0.84920 1.90642 1.51542 1.16286 1.85332 1.21678 1.02735 0.99472 0.93656 1.20208 1.02493 0.96686 0.90081 1.19782 0.93332 1.02159 0.97934 1.20846 0.95064 0.97044 0.95817 1.20648 0.98717 1.05076 0.97259 1.17795 0.92827 0.92307 0.86832 1.46266 1.05773 1.59372 1.24191 1.21554 0.93213 0.96844 0.92901 1.21626 0.80849 1.01687 1.00691 1.20597 0.93318 1.07006 1.00572 1.20840 0.99369 0.95453 0.93136 0.96672 0.95551 0.89234 0.92628 0.77981 0.89592 0.89663 0.90647 0.90612 0.86054 0.86293 0.92954 0.91150 0.92902 0.93592 0.91812 0.91342 0.86441 0.86092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.39 16 2 C 0.26 6.86 2.56 -69.08 -0.18 6.68 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 4 C -0.53 -14.36 8.73 -34.44 -0.30 -14.66 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -25.28 11.32 55.43 0.63 -24.66 16 8 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 12 N -0.71 -15.19 5.07 -54.93 -0.28 -15.47 16 13 C 0.50 10.08 7.79 -10.98 -0.09 10.00 16 14 O -0.56 -13.55 15.64 5.56 0.09 -13.46 16 15 C -0.14 -1.98 5.68 -27.88 -0.16 -2.14 16 16 C -0.06 -0.80 4.63 -27.88 -0.13 -0.93 16 17 C -0.13 -1.62 5.14 -104.59 -0.54 -2.16 16 18 C -0.07 -0.80 9.69 -39.61 -0.38 -1.19 16 19 C -0.19 -2.10 9.21 -39.38 -0.36 -2.47 16 20 C 0.20 2.18 6.55 -83.78 -0.55 1.63 16 21 N -0.64 -5.54 3.41 -187.55 -0.64 -6.18 16 22 C 0.10 0.62 9.40 59.85 0.56 1.18 16 23 C 0.09 0.60 10.16 59.85 0.61 1.20 16 24 C -0.19 -2.08 9.31 -39.38 -0.37 -2.45 16 25 C -0.07 -0.80 9.69 -39.61 -0.38 -1.19 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 29 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.39 7.17 8.54 -40.82 -0.35 6.82 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 1.12 8.04 -51.93 -0.42 0.70 16 34 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 35 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.12 1.07 6.14 -52.49 -0.32 0.75 16 37 H 0.05 0.32 7.95 -51.93 -0.41 -0.09 16 38 H 0.07 0.31 7.79 -51.93 -0.40 -0.10 16 39 H 0.05 0.33 7.95 -51.93 -0.41 -0.08 16 40 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.06 0.29 7.92 -51.93 -0.41 -0.12 16 42 H 0.07 0.42 6.20 -51.93 -0.32 0.10 16 43 H 0.12 1.07 6.73 -52.49 -0.35 0.72 16 44 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 361.23 15.07 5.44 5.44 Total: -1.00 -32.24 361.23 -8.83 -41.07 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -7.03 Total: 5.58 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -2.01 Total: -8.21 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: -0.29 Total: -46.31 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.09 Total: -13.46 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.24 -8.83 -41.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299653038.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.216 kcal (2) G-P(sol) polarization free energy of solvation -32.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds