Wall clock time and date at job start Tue Mar 31 2020 08:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31519 * 119.99723 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47147 * 90.00197 * 8 6 4 10 10 H 1.48499 * 109.46797 * 209.99607 * 8 6 4 11 11 H 1.48500 * 109.47032 * 329.99738 * 8 6 4 12 12 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 13 13 C 1.34781 * 119.99874 * 85.00543 * 12 2 1 14 14 O 1.21278 * 120.00033 * 359.97438 * 13 12 2 15 15 C 1.50703 * 120.00101 * 179.97438 * 13 12 2 16 16 C 1.52996 * 109.47006 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.47006 * 179.97438 * 16 15 13 18 18 C 1.38284 * 119.92279 * 269.72878 * 17 16 15 19 19 C 1.38108 * 120.07204 * 179.72491 * 18 17 16 20 20 C 1.38914 * 119.92193 * 0.54355 * 19 18 17 21 21 N 1.39678 * 120.07073 * 179.70066 * 20 19 18 22 22 C 1.46502 * 119.99733 * 180.02562 * 21 20 19 23 23 C 1.46503 * 120.00150 * 0.02923 * 21 20 19 24 24 C 1.38909 * 119.85308 * 359.73248 * 20 19 18 25 25 C 1.38105 * 119.92412 * 359.97438 * 24 20 19 26 26 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 27 27 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 29 29 H 0.97003 * 119.99231 * 179.97438 * 7 6 4 30 30 H 0.97002 * 120.00410 * 264.99761 * 12 2 1 31 31 H 1.09002 * 109.46880 * 299.99754 * 15 13 12 32 32 H 1.09003 * 109.46851 * 59.99965 * 15 13 12 33 33 H 1.09002 * 109.47281 * 299.99730 * 16 15 13 34 34 H 1.08997 * 109.47550 * 59.99777 * 16 15 13 35 35 H 1.07994 * 119.96712 * 359.97438 * 18 17 16 36 36 H 1.08000 * 120.04240 * 180.26983 * 19 18 17 37 37 H 1.08992 * 109.47328 * 60.00252 * 22 21 20 38 38 H 1.09002 * 109.46966 * 180.02562 * 22 21 20 39 39 H 1.09002 * 109.47123 * 300.00460 * 22 21 20 40 40 H 1.08996 * 109.46991 * 89.99669 * 23 21 20 41 41 H 1.09004 * 109.46668 * 209.99544 * 23 21 20 42 42 H 1.08994 * 109.46942 * 329.99447 * 23 21 20 43 43 H 1.07995 * 120.03837 * 180.02562 * 24 20 19 44 44 H 1.08000 * 119.96148 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5460 4.4124 10 1 1.3431 -0.9492 5.1120 11 1 2.4857 -2.5663 3.7119 12 7 2.0183 -0.6907 -1.1961 13 6 2.1470 -0.0183 -2.3572 14 8 1.8583 1.1583 -2.4117 15 6 2.6499 -0.7286 -3.5875 16 6 2.7007 0.2543 -4.7588 17 6 3.2041 -0.4559 -5.9890 18 6 4.5593 -0.4855 -6.2624 19 6 5.0245 -1.1402 -7.3859 20 6 4.1284 -1.7598 -8.2477 21 7 4.5950 -2.4176 -9.3882 22 6 3.6484 -3.0700 -10.2962 23 6 6.0309 -2.4551 -9.6762 24 6 2.7672 -1.7232 -7.9731 25 6 2.3093 -1.0719 -6.8446 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.7090 1.1614 3.4844 30 1 2.2490 -1.6319 -1.1526 31 1 3.6492 -1.1205 -3.3979 32 1 1.9776 -1.5509 -3.8325 33 1 1.7012 0.6458 -4.9483 34 1 3.3726 1.0769 -4.5141 35 1 5.2551 0.0005 -5.5945 36 1 6.0835 -1.1668 -7.5966 37 1 2.9501 -2.3296 -10.6864 38 1 4.1934 -3.5267 -11.1224 39 1 3.0974 -3.8394 -9.7553 40 1 6.4720 -3.3361 -9.2101 41 1 6.1840 -2.4994 -10.7545 42 1 6.5048 -1.5578 -9.2785 43 1 2.0679 -2.2043 -8.6408 44 1 1.2511 -1.0427 -6.6308 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299653038.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:54 Heat of formation + Delta-G solvation = -38.006173 kcal Electronic energy + Delta-G solvation = -22035.082829 eV Core-core repulsion = 18757.997459 eV Total energy + Delta-G solvation = -3277.085370 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -40.79134 -40.28445 -37.54129 -36.68278 -34.33393 -34.07666 -31.99093 -31.20511 -29.70371 -28.94951 -27.34115 -26.35875 -24.14808 -23.20640 -22.60658 -21.18383 -20.94269 -18.86525 -18.21129 -17.43435 -17.12656 -16.90300 -16.18433 -15.99630 -15.91593 -15.78347 -15.05191 -14.84637 -14.56557 -14.41602 -14.34212 -13.91697 -13.67736 -13.53789 -13.42818 -13.02280 -12.94206 -12.85658 -12.79253 -12.74757 -12.63817 -12.25909 -12.13345 -12.06894 -12.01481 -11.52727 -11.10028 -10.74154 -10.58794 -10.42763 -9.76961 -9.70249 -8.17025 -8.08809 -6.34357 0.59657 0.69188 1.45169 1.45889 1.56774 1.89754 2.30818 2.37352 2.69795 3.02054 3.13377 3.92234 3.95548 4.14168 4.21238 4.23084 4.24825 4.46025 4.47554 4.54782 4.63728 4.71101 4.72690 4.80654 4.81353 4.90504 4.91453 4.93498 4.94632 5.06396 5.11723 5.24141 5.29413 5.43861 5.45393 5.57173 5.63872 5.71634 5.92173 5.93263 6.00956 6.11727 6.41735 6.60505 6.74161 7.02511 7.33706 7.62513 8.89614 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.033342 B = 0.002417 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.590356 B =11581.532260 C =11895.377849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.268 3.732 3 H -0.004 1.004 4 C -0.546 4.546 5 H 0.073 0.927 6 C 0.011 3.989 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.259 1.259 12 N -0.709 5.709 13 C 0.494 3.506 14 O -0.604 6.604 15 C -0.118 4.118 16 C -0.049 4.049 17 C -0.146 4.146 18 C -0.075 4.075 19 C -0.203 4.203 20 C 0.199 3.801 21 N -0.647 5.647 22 C 0.092 3.908 23 C 0.089 3.911 24 C -0.201 4.201 25 C -0.075 4.075 26 H 0.011 0.989 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.265 0.735 30 H 0.405 0.595 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.127 0.873 36 H 0.135 0.865 37 H 0.053 0.947 38 H 0.092 0.908 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.132 0.868 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.358 -10.770 -25.478 28.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.164 3.836 3 H 0.014 0.986 4 C -0.584 4.584 5 H 0.091 0.909 6 C -0.188 4.188 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.183 1.183 12 N -0.358 5.358 13 C 0.282 3.718 14 O -0.486 6.486 15 C -0.158 4.158 16 C -0.087 4.087 17 C -0.148 4.148 18 C -0.094 4.094 19 C -0.225 4.225 20 C 0.096 3.904 21 N -0.359 5.359 22 C -0.050 4.050 23 C -0.054 4.054 24 C -0.223 4.223 25 C -0.093 4.093 26 H 0.030 0.970 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.240 0.760 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.145 0.855 36 H 0.153 0.847 37 H 0.072 0.928 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.150 0.850 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.142 -9.945 -25.549 28.599 hybrid contribution 0.084 -0.254 1.129 1.161 sum 8.225 -10.200 -24.419 27.712 Atomic orbital electron populations 1.21890 0.98380 0.99422 0.99499 1.18330 0.91123 0.91871 0.82251 0.98631 1.21559 1.32496 1.13527 0.90835 0.90853 1.25847 0.94910 0.95651 1.02441 1.70067 1.37032 1.24000 1.24575 0.85315 0.77748 0.79173 0.77908 1.20347 1.20935 1.18336 1.46336 1.65316 1.14263 1.09864 1.21533 0.77232 0.87139 0.85859 1.90622 1.53309 1.18612 1.86087 1.21645 1.04068 0.99487 0.90598 1.20062 1.01470 0.96304 0.90827 1.19601 0.93930 1.03495 0.97749 1.20972 0.94876 0.97177 0.96376 1.20840 0.99683 1.04954 0.97009 1.18013 0.92916 0.91977 0.87450 1.46561 1.07083 1.58628 1.23618 1.21714 0.93312 0.96837 0.93162 1.21790 0.79611 1.01869 1.02120 1.20779 0.93864 1.07070 1.00581 1.20968 0.99672 0.95371 0.93316 0.96962 0.94061 0.91573 0.92574 0.75991 0.87364 0.87166 0.91993 0.92137 0.85516 0.84730 0.92829 0.88971 0.92871 0.93162 0.89808 0.91358 0.84976 0.85431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.94 9.26 71.98 0.67 -6.27 16 2 C 0.27 14.29 2.56 44.25 0.11 14.41 16 3 H 0.00 -0.27 7.58 -2.39 -0.02 -0.28 16 4 C -0.55 -29.43 8.73 25.60 0.22 -29.21 16 5 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 6 C 0.01 0.62 5.30 84.65 0.45 1.07 16 7 N -0.92 -53.60 11.32 21.45 0.24 -53.36 16 8 Si 0.97 42.49 29.54 68.60 2.03 44.52 16 9 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 12 N -0.71 -30.15 5.07 -446.09 -2.26 -32.41 16 13 C 0.49 20.09 7.79 87.66 0.68 20.77 16 14 O -0.60 -30.35 15.64 -3.02 -0.05 -30.39 16 15 C -0.12 -3.32 5.68 29.85 0.17 -3.15 16 16 C -0.05 -1.37 4.63 29.85 0.14 -1.23 16 17 C -0.15 -3.51 5.14 -19.84 -0.10 -3.61 16 18 C -0.08 -1.67 9.69 22.25 0.22 -1.46 16 19 C -0.20 -4.04 9.21 22.40 0.21 -3.83 16 20 C 0.20 3.89 6.55 38.21 0.25 4.14 16 21 N -0.65 -9.57 3.41 -747.28 -2.55 -12.12 16 22 C 0.09 0.93 9.40 127.77 1.20 2.13 16 23 C 0.09 0.89 10.16 127.77 1.30 2.18 16 24 C -0.20 -4.00 9.31 22.40 0.21 -3.79 16 25 C -0.07 -1.64 9.69 22.25 0.22 -1.43 16 26 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 29 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 30 H 0.41 14.38 8.54 -92.71 -0.79 13.59 16 31 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.06 1.87 8.04 -2.39 -0.02 1.86 16 34 H 0.06 1.85 8.04 -2.39 -0.02 1.83 16 35 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 36 H 0.13 2.16 6.14 -2.91 -0.02 2.14 16 37 H 0.05 0.53 7.95 -2.39 -0.02 0.52 16 38 H 0.09 0.51 7.79 -2.39 -0.02 0.50 16 39 H 0.05 0.54 7.95 -2.39 -0.02 0.52 16 40 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.08 0.50 7.92 -2.39 -0.02 0.48 16 42 H 0.07 0.69 6.20 -2.39 -0.01 0.67 16 43 H 0.13 2.15 6.73 -2.91 -0.02 2.13 16 44 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -70.88 361.23 3.54 -67.34 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.19 Total: 25.70 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 5.94 Total: -9.28 kcal Atomic # 7 Polarization: -93.32 SS G_CDS: -4.57 Total: -97.89 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -0.05 Total: -30.39 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -70.88 3.54 -67.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299653038.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.334 kcal (2) G-P(sol) polarization free energy of solvation -70.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds