Wall clock time and date at job start Tue Mar 31 2020 07:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47103 * 2 1 4 4 C 1.52998 * 109.47169 * 120.00080 * 2 1 3 5 5 H 1.09005 * 109.47104 * 60.00803 * 4 2 1 6 6 C 1.52991 * 109.47406 * 299.99950 * 4 2 1 7 7 N 1.46501 * 109.46992 * 179.97438 * 4 2 1 8 8 C 1.34776 * 119.99932 * 205.00141 * 7 4 2 9 9 O 1.21282 * 120.00135 * 0.02562 * 8 7 4 10 10 C 1.50710 * 120.00032 * 180.02562 * 8 7 4 11 11 N 1.46498 * 109.46939 * 179.97438 * 10 8 7 12 12 C 1.39688 * 119.99398 * 179.97438 * 11 10 8 13 13 C 1.39334 * 119.95160 * 359.72560 * 12 11 10 14 14 C 1.38479 * 120.42130 * 179.72152 * 13 12 11 15 15 C 1.37689 * 120.32480 * 0.55329 * 14 13 12 16 16 C 1.40750 * 119.89464 * 359.72454 * 15 14 13 17 17 C 1.41403 * 120.21070 * 180.02562 * 16 15 14 18 18 H 1.08011 * 120.00004 * 150.19408 * 17 16 15 19 19 C 1.39928 * 120.00359 * 330.19898 * 17 16 15 20 20 N 1.30827 * 120.00540 * 161.73213 * 19 17 16 21 21 Si 1.86801 * 119.99748 * 341.72524 * 19 17 16 22 22 H 1.48492 * 109.47286 * 95.41214 * 21 19 17 23 23 H 1.48500 * 109.47458 * 215.41700 * 21 19 17 24 24 H 1.48504 * 109.47121 * 335.41624 * 21 19 17 25 25 C 1.38271 * 119.94690 * 179.97438 * 12 11 10 26 26 H 1.08997 * 109.47080 * 59.99858 * 1 2 3 27 27 H 1.09005 * 109.46452 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46768 * 299.99412 * 1 2 3 29 29 H 1.09001 * 109.47297 * 240.00155 * 2 1 3 30 30 H 1.08997 * 109.47269 * 300.00026 * 3 2 1 31 31 H 1.09001 * 109.46917 * 59.99922 * 3 2 1 32 32 H 1.09003 * 109.47228 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47262 * 300.00429 * 6 4 2 34 34 H 1.09002 * 109.47105 * 59.99956 * 6 4 2 35 35 H 1.08997 * 109.47400 * 179.97438 * 6 4 2 36 36 H 0.97001 * 119.99793 * 25.00756 * 7 4 2 37 37 H 1.09003 * 109.46522 * 299.99762 * 10 8 7 38 38 H 1.08993 * 109.46923 * 59.99201 * 10 8 7 39 39 H 0.96995 * 120.00150 * 359.97438 * 11 10 8 40 40 H 1.07997 * 119.79115 * 0.02562 * 13 12 11 41 41 H 1.08004 * 119.84076 * 180.28336 * 14 13 12 42 42 H 1.08004 * 120.05691 * 179.74781 * 15 14 13 43 43 H 0.96996 * 120.00262 * 180.02562 * 20 19 17 44 44 H 1.07998 * 120.16519 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6768 -1.7490 1.2491 6 6 1.5301 -0.0001 2.4984 7 7 3.5050 -0.7218 1.2489 8 6 4.1787 -1.6780 1.9183 9 8 3.5722 -2.5384 2.5206 10 6 5.6858 -1.6783 1.9184 11 7 6.1739 -2.8095 2.7111 12 6 7.5472 -3.0190 2.8572 13 6 8.4519 -2.1547 2.2439 14 6 9.8153 -2.3499 2.3870 15 6 10.2922 -3.4077 3.1282 16 6 9.3904 -4.2924 3.7488 17 6 9.8728 -5.3807 4.5121 18 1 9.2941 -5.7560 5.3433 19 6 11.0999 -5.9714 4.1907 20 7 11.7185 -6.7152 5.0713 21 14 11.8546 -5.6981 2.5039 22 1 12.8250 -4.5762 2.5717 23 1 12.5552 -6.9331 2.0690 24 1 10.7833 -5.3677 1.5299 25 6 8.0068 -4.0867 3.6060 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.8934 1.0275 2.4985 34 1 0.4401 -0.0001 2.4985 35 1 1.8931 -0.5142 3.3884 36 1 3.9901 -0.0338 0.7669 37 1 6.0492 -1.7678 0.8946 38 1 6.0492 -0.7470 2.3527 39 1 5.5435 -3.4130 3.1344 40 1 8.0874 -1.3245 1.6572 41 1 10.5082 -1.6716 1.9113 42 1 11.3565 -3.5582 3.2336 43 1 12.5693 -7.1243 4.8486 44 1 7.3065 -4.7593 4.0788 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313406299.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:00 Heat of formation + Delta-G solvation = -30.657223 kcal Electronic energy + Delta-G solvation = -22347.797955 eV Core-core repulsion = 19071.031259 eV Total energy + Delta-G solvation = -3276.766695 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.20738 -38.15387 -37.47683 -34.84281 -33.54914 -33.11452 -30.18042 -30.15690 -29.00574 -27.64721 -26.08242 -25.05905 -24.18758 -21.13868 -20.90274 -20.08386 -19.68224 -17.81213 -17.05010 -16.46118 -15.84387 -15.71713 -15.56569 -15.06787 -14.52110 -14.44843 -14.15669 -13.68055 -13.45925 -13.38117 -13.05699 -12.90465 -12.51993 -12.49583 -12.41960 -12.33233 -11.85494 -11.80771 -11.51854 -11.43521 -11.07225 -10.93379 -10.85756 -10.73241 -10.39860 -9.94001 -9.74598 -9.47277 -9.33930 -9.23054 -8.89566 -7.56896 -6.85124 -6.46358 -4.40910 2.50915 2.72332 2.87385 2.94521 3.20431 3.30981 3.42792 4.09086 4.16995 4.27402 4.41608 4.58199 4.62882 4.65227 4.97815 5.02862 5.12251 5.23311 5.36292 5.41126 5.43556 5.44726 5.48610 5.60986 5.62366 5.65194 5.74501 5.85654 6.05141 6.08121 6.27056 6.31082 6.59335 6.83242 6.85830 7.00600 7.25404 7.36617 7.59217 7.71307 7.81417 8.03096 8.05547 8.38573 8.48199 8.54232 8.81748 8.94618 10.17720 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.039147 B = 0.002679 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.079071 B =10449.333988 C =10778.206892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 C -0.153 4.153 4 C 0.145 3.855 5 H 0.088 0.912 6 C -0.168 4.168 7 N -0.728 5.728 8 C 0.510 3.490 9 O -0.534 6.534 10 C 0.117 3.883 11 N -0.749 5.749 12 C 0.236 3.764 13 C -0.305 4.305 14 C -0.048 4.048 15 C -0.271 4.271 16 C 0.125 3.875 17 C -0.450 4.450 18 H 0.089 0.911 19 C 0.085 3.915 20 N -0.813 5.813 21 Si 0.915 3.085 22 H -0.272 1.272 23 H -0.295 1.295 24 H -0.244 1.244 25 C -0.274 4.274 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.400 0.600 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.403 0.597 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.283 0.717 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.206 15.125 -11.123 25.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.210 4.210 4 C 0.041 3.959 5 H 0.106 0.894 6 C -0.226 4.226 7 N -0.382 5.382 8 C 0.297 3.703 9 O -0.409 6.409 10 C -0.012 4.012 11 N -0.386 5.386 12 C 0.137 3.863 13 C -0.327 4.327 14 C -0.067 4.067 15 C -0.291 4.291 16 C 0.122 3.878 17 C -0.478 4.478 18 H 0.107 0.893 19 C -0.133 4.133 20 N -0.437 5.437 21 Si 0.742 3.258 22 H -0.198 1.198 23 H -0.222 1.222 24 H -0.167 1.167 25 C -0.298 4.298 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.236 0.764 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.239 0.761 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.094 0.906 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.472 14.461 -10.666 25.063 hybrid contribution 0.499 0.219 -0.727 0.908 sum -16.973 14.680 -11.392 25.167 Atomic orbital electron populations 1.21861 0.94118 1.02261 1.02265 1.21381 0.96694 0.96616 0.97634 1.21934 1.00849 0.95796 1.02407 1.20963 0.79482 1.00718 0.94737 0.89433 1.22281 1.01392 1.00790 0.98104 1.46091 1.07121 1.30861 1.54099 1.20879 0.90480 0.80848 0.78105 1.90688 1.70080 1.37242 1.42930 1.20823 0.89286 0.93039 0.98049 1.44209 1.04643 1.31097 1.58655 1.17513 0.81386 0.93625 0.93760 1.19878 0.92791 1.05231 1.14846 1.20349 0.94111 0.96059 0.96144 1.20904 0.97971 0.99999 1.10240 1.17450 0.90679 0.91332 0.88376 1.19463 1.02461 1.12706 1.13217 0.89333 1.26150 0.95353 0.92901 0.98932 1.69708 1.14057 1.25373 1.34601 0.86263 0.79819 0.76561 0.83124 1.19804 1.22238 1.16709 1.20418 0.95374 1.02174 1.11821 0.92276 0.92346 0.91975 0.90547 0.92293 0.91902 0.92706 0.92121 0.91419 0.92038 0.76442 0.90091 0.90066 0.76051 0.89109 0.88991 0.88511 0.90627 0.88346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 8.84 37.16 0.33 -0.45 16 2 C -0.10 -0.63 2.91 -90.62 -0.26 -0.89 16 3 C -0.15 -0.76 8.67 37.16 0.32 -0.44 16 4 C 0.15 1.23 2.40 -67.94 -0.16 1.07 16 5 H 0.09 0.93 7.58 -51.93 -0.39 0.53 16 6 C -0.17 -1.37 8.78 37.15 0.33 -1.05 16 7 N -0.73 -6.63 5.00 -53.81 -0.27 -6.90 16 8 C 0.51 6.64 7.86 -10.98 -0.09 6.56 16 9 O -0.53 -8.95 15.33 5.56 0.09 -8.87 16 10 C 0.12 1.59 5.39 -5.19 -0.03 1.56 16 11 N -0.75 -13.61 5.70 -59.86 -0.34 -13.95 16 12 C 0.24 5.12 6.64 -83.86 -0.56 4.56 16 13 C -0.30 -6.35 9.32 -39.09 -0.36 -6.71 16 14 C -0.05 -1.05 10.02 -39.69 -0.40 -1.45 16 15 C -0.27 -6.75 7.17 -38.83 -0.28 -7.03 16 16 C 0.13 3.31 5.10 -106.85 -0.55 2.77 16 17 C -0.45 -12.65 9.57 -37.75 -0.36 -13.01 16 18 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 19 C 0.08 2.30 5.40 -17.35 -0.09 2.21 16 20 N -0.81 -22.34 13.93 55.55 0.77 -21.57 16 21 Si 0.92 21.60 24.52 -169.99 -4.17 17.43 16 22 H -0.27 -6.20 6.71 56.52 0.38 -5.83 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 24 H -0.24 -5.91 6.86 56.52 0.39 -5.52 16 25 C -0.27 -6.71 9.63 -38.68 -0.37 -7.09 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.31 6.43 -51.93 -0.33 -0.02 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.32 6.43 -51.93 -0.33 -0.02 16 32 H 0.05 0.25 6.51 -51.93 -0.34 -0.09 16 33 H 0.06 0.44 6.43 -51.93 -0.33 0.10 16 34 H 0.07 0.46 6.43 -51.93 -0.33 0.13 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.40 2.61 6.87 -40.82 -0.28 2.33 16 37 H 0.08 1.00 7.93 -51.93 -0.41 0.59 16 38 H 0.08 1.00 7.95 -51.93 -0.41 0.59 16 39 H 0.40 7.53 7.44 -40.82 -0.30 7.22 16 40 H 0.09 1.60 6.70 -52.49 -0.35 1.25 16 41 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 42 H 0.10 2.41 4.73 -52.48 -0.25 2.16 16 43 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 44 H 0.10 2.36 8.06 -52.49 -0.42 1.93 16 LS Contribution 347.46 15.07 5.24 5.24 Total: -1.00 -30.97 347.46 -7.85 -38.82 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -6.63 Total: 9.18 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -2.53 Total: -19.38 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.16 Total: -42.41 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.17 Total: 17.43 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.97 -7.85 -38.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313406299.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.158 kcal (2) G-P(sol) polarization free energy of solvation -30.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds