Wall clock time and date at job start Tue Mar 31 2020 07:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47103 * 2 1 4 4 C 1.52998 * 109.47169 * 120.00080 * 2 1 3 5 5 H 1.09005 * 109.47104 * 60.00803 * 4 2 1 6 6 C 1.52991 * 109.47406 * 299.99950 * 4 2 1 7 7 N 1.46501 * 109.46992 * 179.97438 * 4 2 1 8 8 C 1.34776 * 119.99932 * 205.00141 * 7 4 2 9 9 O 1.21282 * 120.00135 * 0.02562 * 8 7 4 10 10 C 1.50710 * 120.00032 * 180.02562 * 8 7 4 11 11 N 1.46498 * 109.46939 * 179.97438 * 10 8 7 12 12 C 1.39688 * 119.99398 * 179.97438 * 11 10 8 13 13 C 1.39334 * 119.95160 * 359.72560 * 12 11 10 14 14 C 1.38479 * 120.42130 * 179.72152 * 13 12 11 15 15 C 1.37689 * 120.32480 * 0.55329 * 14 13 12 16 16 C 1.40750 * 119.89464 * 359.72454 * 15 14 13 17 17 C 1.41403 * 120.21070 * 180.02562 * 16 15 14 18 18 H 1.08011 * 120.00004 * 150.19408 * 17 16 15 19 19 C 1.39928 * 120.00359 * 330.19898 * 17 16 15 20 20 N 1.30827 * 120.00540 * 161.73213 * 19 17 16 21 21 Si 1.86801 * 119.99748 * 341.72524 * 19 17 16 22 22 H 1.48492 * 109.47286 * 95.41214 * 21 19 17 23 23 H 1.48500 * 109.47458 * 215.41700 * 21 19 17 24 24 H 1.48504 * 109.47121 * 335.41624 * 21 19 17 25 25 C 1.38271 * 119.94690 * 179.97438 * 12 11 10 26 26 H 1.08997 * 109.47080 * 59.99858 * 1 2 3 27 27 H 1.09005 * 109.46452 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46768 * 299.99412 * 1 2 3 29 29 H 1.09001 * 109.47297 * 240.00155 * 2 1 3 30 30 H 1.08997 * 109.47269 * 300.00026 * 3 2 1 31 31 H 1.09001 * 109.46917 * 59.99922 * 3 2 1 32 32 H 1.09003 * 109.47228 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47262 * 300.00429 * 6 4 2 34 34 H 1.09002 * 109.47105 * 59.99956 * 6 4 2 35 35 H 1.08997 * 109.47400 * 179.97438 * 6 4 2 36 36 H 0.97001 * 119.99793 * 25.00756 * 7 4 2 37 37 H 1.09003 * 109.46522 * 299.99762 * 10 8 7 38 38 H 1.08993 * 109.46923 * 59.99201 * 10 8 7 39 39 H 0.96995 * 120.00150 * 359.97438 * 11 10 8 40 40 H 1.07997 * 119.79115 * 0.02562 * 13 12 11 41 41 H 1.08004 * 119.84076 * 180.28336 * 14 13 12 42 42 H 1.08004 * 120.05691 * 179.74781 * 15 14 13 43 43 H 0.96996 * 120.00262 * 180.02562 * 20 19 17 44 44 H 1.07998 * 120.16519 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6768 -1.7490 1.2491 6 6 1.5301 -0.0001 2.4984 7 7 3.5050 -0.7218 1.2489 8 6 4.1787 -1.6780 1.9183 9 8 3.5722 -2.5384 2.5206 10 6 5.6858 -1.6783 1.9184 11 7 6.1739 -2.8095 2.7111 12 6 7.5472 -3.0190 2.8572 13 6 8.4519 -2.1547 2.2439 14 6 9.8153 -2.3499 2.3870 15 6 10.2922 -3.4077 3.1282 16 6 9.3904 -4.2924 3.7488 17 6 9.8728 -5.3807 4.5121 18 1 9.2941 -5.7560 5.3433 19 6 11.0999 -5.9714 4.1907 20 7 11.7185 -6.7152 5.0713 21 14 11.8546 -5.6981 2.5039 22 1 12.8250 -4.5762 2.5717 23 1 12.5552 -6.9331 2.0690 24 1 10.7833 -5.3677 1.5299 25 6 8.0068 -4.0867 3.6060 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.8934 1.0275 2.4985 34 1 0.4401 -0.0001 2.4985 35 1 1.8931 -0.5142 3.3884 36 1 3.9901 -0.0338 0.7669 37 1 6.0492 -1.7678 0.8946 38 1 6.0492 -0.7470 2.3527 39 1 5.5435 -3.4130 3.1344 40 1 8.0874 -1.3245 1.6572 41 1 10.5082 -1.6716 1.9113 42 1 11.3565 -3.5582 3.2336 43 1 12.5693 -7.1243 4.8486 44 1 7.3065 -4.7593 4.0788 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313406299.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:56 Heat of formation + Delta-G solvation = -51.532007 kcal Electronic energy + Delta-G solvation = -22348.703153 eV Core-core repulsion = 19071.031259 eV Total energy + Delta-G solvation = -3277.671894 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.18966 -39.75239 -38.39118 -36.47238 -34.98908 -34.34856 -32.03498 -31.26513 -30.13932 -28.10003 -27.34068 -26.97261 -24.96150 -22.85944 -22.35568 -21.37334 -20.40460 -19.41344 -18.39149 -17.67210 -17.33874 -16.67904 -16.65510 -16.35803 -16.04261 -15.95137 -15.09277 -14.86988 -14.57226 -14.49070 -14.31479 -14.00533 -13.85713 -13.83097 -13.62137 -13.17946 -13.07241 -12.99162 -12.71313 -12.59517 -12.33965 -12.24350 -11.95817 -11.60656 -11.57732 -11.51409 -11.36704 -11.08364 -11.01434 -10.62078 -10.15791 -9.46290 -8.86039 -8.12222 -6.49130 0.87776 1.10133 1.30632 1.46309 1.50386 1.55241 1.94590 2.18872 2.68277 2.78891 3.62322 3.65249 3.77456 3.90486 4.10302 4.32571 4.39692 4.41493 4.43223 4.47211 4.57135 4.64573 4.75278 4.79350 4.86671 4.97698 5.00764 5.01234 5.04738 5.08643 5.15570 5.17634 5.25543 5.38637 5.49467 5.54050 5.56579 5.74477 5.88256 6.00291 6.09237 6.39008 6.44367 6.69962 6.83077 6.86436 7.02195 7.15457 8.23243 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.039147 B = 0.002679 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.079071 B =10449.333988 C =10778.206892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.152 4.152 4 C 0.143 3.857 5 H 0.062 0.938 6 C -0.163 4.163 7 N -0.707 5.707 8 C 0.511 3.489 9 O -0.579 6.579 10 C 0.111 3.889 11 N -0.749 5.749 12 C 0.243 3.757 13 C -0.285 4.285 14 C -0.045 4.045 15 C -0.292 4.292 16 C 0.106 3.894 17 C -0.492 4.492 18 H 0.047 0.953 19 C 0.045 3.955 20 N -0.856 5.856 21 Si 0.975 3.025 22 H -0.255 1.255 23 H -0.281 1.281 24 H -0.253 1.253 25 C -0.300 4.300 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.031 0.969 36 H 0.417 0.583 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.397 0.603 40 H 0.138 0.862 41 H 0.133 0.867 42 H 0.094 0.906 43 H 0.293 0.707 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.719 18.934 -14.516 29.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.209 4.209 4 C 0.039 3.961 5 H 0.080 0.920 6 C -0.221 4.221 7 N -0.361 5.361 8 C 0.298 3.702 9 O -0.459 6.459 10 C -0.016 4.016 11 N -0.383 5.383 12 C 0.142 3.858 13 C -0.308 4.308 14 C -0.063 4.063 15 C -0.313 4.313 16 C 0.103 3.897 17 C -0.522 4.522 18 H 0.065 0.935 19 C -0.168 4.168 20 N -0.483 5.483 21 Si 0.799 3.201 22 H -0.180 1.180 23 H -0.208 1.208 24 H -0.177 1.177 25 C -0.324 4.324 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.050 0.950 36 H 0.255 0.745 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.233 0.767 40 H 0.156 0.844 41 H 0.151 0.849 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.020 18.333 -14.088 29.313 hybrid contribution 0.376 -0.767 0.277 0.898 sum -17.644 17.566 -13.811 28.471 Atomic orbital electron populations 1.21877 0.93579 1.02092 1.03029 1.21326 0.97092 0.97134 0.95968 1.21946 1.01319 0.94692 1.02984 1.21043 0.78860 0.99860 0.96354 0.91961 1.22243 1.02294 1.01075 0.96499 1.45946 1.07522 1.29968 1.52628 1.20848 0.90389 0.80975 0.78019 1.90688 1.70751 1.39277 1.45180 1.21140 0.89669 0.92067 0.98712 1.44342 1.03210 1.32182 1.58562 1.17586 0.83296 0.92565 0.92390 1.20409 0.92119 1.05207 1.13065 1.20815 0.95513 0.95217 0.94763 1.20991 0.97618 1.01122 1.11556 1.17584 0.91891 0.91284 0.88912 1.19454 1.03664 1.15130 1.13940 0.93481 1.26889 0.95372 0.92434 1.02147 1.69739 1.15111 1.27113 1.36296 0.85351 0.78962 0.77459 0.78371 1.17995 1.20801 1.17696 1.20501 0.94818 1.03782 1.13339 0.91139 0.93046 0.91596 0.90522 0.91346 0.91766 0.91974 0.90586 0.90113 0.94957 0.74472 0.87555 0.87549 0.76704 0.84392 0.84874 0.88852 0.89713 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.84 71.98 0.64 -0.60 16 2 C -0.10 -0.90 2.91 -10.79 -0.03 -0.94 16 3 C -0.15 -0.96 8.67 71.98 0.62 -0.34 16 4 C 0.14 2.18 2.40 44.99 0.11 2.28 16 5 H 0.06 1.30 7.58 -2.38 -0.02 1.28 16 6 C -0.16 -2.41 8.78 71.98 0.63 -1.78 16 7 N -0.71 -10.90 5.00 -442.53 -2.21 -13.12 16 8 C 0.51 12.20 7.86 87.66 0.69 12.89 16 9 O -0.58 -19.29 15.33 -3.04 -0.05 -19.34 16 10 C 0.11 2.59 5.39 85.64 0.46 3.05 16 11 N -0.75 -25.70 5.70 -343.29 -1.96 -27.66 16 12 C 0.24 10.06 6.64 38.16 0.25 10.32 16 13 C -0.29 -10.53 9.32 22.59 0.21 -10.32 16 14 C -0.04 -1.78 10.02 22.20 0.22 -1.56 16 15 C -0.29 -14.23 7.17 22.75 0.16 -14.07 16 16 C 0.11 5.79 5.10 -21.31 -0.11 5.68 16 17 C -0.49 -29.56 9.57 23.46 0.22 -29.34 16 18 H 0.05 3.07 8.06 -2.90 -0.02 3.04 16 19 C 0.05 2.56 5.40 85.25 0.46 3.02 16 20 N -0.86 -49.35 13.93 21.82 0.30 -49.04 16 21 Si 0.98 44.97 24.52 68.60 1.68 46.65 16 22 H -0.25 -10.93 6.71 99.48 0.67 -10.26 16 23 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.25 -11.92 6.86 99.48 0.68 -11.23 16 25 C -0.30 -15.07 9.63 22.86 0.22 -14.85 16 26 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 28 H 0.07 0.50 6.43 -2.39 -0.02 0.49 16 29 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.06 0.41 6.43 -2.39 -0.02 0.40 16 32 H 0.06 0.30 6.51 -2.39 -0.02 0.28 16 33 H 0.08 0.88 6.43 -2.39 -0.02 0.87 16 34 H 0.08 0.97 6.43 -2.39 -0.02 0.96 16 35 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.42 3.69 6.87 -92.71 -0.64 3.05 16 37 H 0.11 2.03 7.93 -2.39 -0.02 2.01 16 38 H 0.11 2.03 7.95 -2.39 -0.02 2.01 16 39 H 0.40 14.76 7.44 -92.71 -0.69 14.07 16 40 H 0.14 3.82 6.70 -2.91 -0.02 3.80 16 41 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 42 H 0.09 4.54 4.73 -2.91 -0.01 4.53 16 43 H 0.29 15.09 8.30 -92.71 -0.77 14.32 16 44 H 0.08 4.31 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -71.89 347.46 2.16 -69.73 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: -0.37 Total: 29.32 kcal Atomic # 6 Polarization: -41.31 SS G_CDS: 4.77 Total: -36.54 kcal Atomic # 7 Polarization: -85.96 SS G_CDS: -3.87 Total: -89.82 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.05 Total: -19.34 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.68 Total: 46.65 kcal Total: -71.89 2.16 -69.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313406299.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.198 kcal (2) G-P(sol) polarization free energy of solvation -71.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds