Wall clock time and date at job start Tue Mar 31 2020 08:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47240 * 2 1 4 4 C 1.50706 * 109.46895 * 240.00658 * 2 1 3 5 5 H 1.07997 * 119.99544 * 239.99698 * 4 2 1 6 6 C 1.37877 * 120.00240 * 59.99901 * 4 2 1 7 7 N 1.31511 * 119.99928 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99767 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46859 * 90.00027 * 8 6 4 10 10 H 1.48499 * 109.46695 * 210.00009 * 8 6 4 11 11 H 1.48504 * 109.47119 * 329.99727 * 8 6 4 12 12 N 1.46496 * 109.47371 * 120.00290 * 2 1 3 13 13 C 1.46498 * 119.99590 * 60.00077 * 12 2 1 14 14 C 1.34775 * 120.00013 * 240.00002 * 12 2 1 15 15 O 1.21625 * 119.99937 * 4.56316 * 14 12 2 16 16 C 1.47258 * 119.99705 * 184.56319 * 14 12 2 17 17 C 1.46692 * 126.94534 * 323.56290 * 16 14 12 18 18 C 1.34486 * 106.33500 * 180.02562 * 17 16 14 19 19 N 1.36452 * 108.85588 * 359.74015 * 18 17 16 20 20 C 1.46495 * 124.84905 * 180.30769 * 19 18 17 21 21 C 1.34652 * 110.29635 * 0.44136 * 19 18 17 22 22 C 1.50703 * 125.80357 * 179.82868 * 21 19 18 23 23 C 1.53782 * 113.61458 * 59.68986 * 22 21 19 24 24 C 1.53780 * 87.08133 * 220.02641 * 23 22 21 25 25 C 1.53784 * 87.17366 * 25.38856 * 24 23 22 26 26 H 1.08994 * 109.46731 * 300.00087 * 1 2 3 27 27 H 1.09002 * 109.46829 * 59.99761 * 1 2 3 28 28 H 1.08992 * 109.47011 * 179.97438 * 1 2 3 29 29 H 0.96999 * 120.00081 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.46987 * 264.81686 * 13 12 2 31 31 H 1.08998 * 109.47902 * 24.82135 * 13 12 2 32 32 H 1.09005 * 109.46940 * 144.82203 * 13 12 2 33 33 H 1.07997 * 126.83125 * 0.02562 * 17 16 14 34 34 H 1.07998 * 125.56919 * 180.02562 * 18 17 16 35 35 H 1.09002 * 109.46892 * 270.15275 * 20 19 18 36 36 H 1.09001 * 109.47606 * 30.15355 * 20 19 18 37 37 H 1.09001 * 109.47101 * 150.15668 * 20 19 18 38 38 H 1.08993 * 112.85294 * 190.89114 * 22 21 19 39 39 H 1.08993 * 113.61322 * 105.47295 * 23 22 21 40 40 H 1.09006 * 113.60987 * 334.57110 * 23 22 21 41 41 H 1.09000 * 113.61573 * 139.98197 * 24 23 22 42 42 H 1.09003 * 113.60955 * 270.80260 * 24 23 22 43 43 H 1.09001 * 113.60736 * 89.16182 * 25 24 23 44 44 H 1.09000 * 113.61091 * 220.06487 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9436 0.8304 -2.6034 8 14 2.3213 -1.1201 -4.0081 9 1 1.3426 -2.1614 -4.4120 10 1 2.4865 -0.1410 -5.1123 11 1 3.6293 -1.7581 -3.7124 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4278 14 6 2.7933 -0.0357 2.0832 15 8 3.0188 1.1502 1.9346 16 6 3.3668 -0.7559 3.2325 17 6 2.7323 -1.8281 4.0070 18 6 3.6172 -2.1846 4.9549 19 7 4.7407 -1.4223 4.8184 20 6 5.9303 -1.5252 5.6672 21 6 4.5985 -0.5600 3.7940 22 6 5.6247 0.4455 3.3392 23 6 6.9576 -0.1874 2.9058 24 6 7.6547 0.9880 3.6110 25 6 6.4016 1.1016 4.4952 26 1 -0.3632 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.7089 1.1617 -3.4843 30 1 0.7897 -2.1449 2.0761 31 1 1.4398 -2.5735 0.4754 32 1 2.5007 -2.6050 1.9044 33 1 1.7500 -2.2477 3.8476 34 1 3.4653 -2.9522 5.6992 35 1 5.8275 -0.8536 6.5196 36 1 6.0355 -2.5502 6.0228 37 1 6.8129 -1.2482 5.0908 38 1 5.2266 1.1607 2.6195 39 1 7.1050 -0.1984 1.8260 40 1 7.1535 -1.1537 3.3707 41 1 8.5512 0.6987 4.1592 42 1 7.8134 1.8521 2.9657 43 1 6.4454 0.4884 5.3952 44 1 6.1010 2.1298 4.6963 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339932267.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:45 Heat of formation + Delta-G solvation = 45.025072 kcal Electronic energy + Delta-G solvation = -24042.580775 eV Core-core repulsion = 20769.095910 eV Total energy + Delta-G solvation = -3273.484865 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.46205 -38.51544 -38.09956 -35.07689 -33.06328 -32.31010 -29.62298 -29.32298 -26.52853 -25.99508 -25.63258 -25.11906 -24.88318 -22.24327 -20.70975 -19.70492 -19.11617 -18.07896 -16.70217 -16.22026 -15.67712 -15.47839 -15.28098 -14.91088 -14.41888 -14.10589 -14.09314 -13.42735 -13.04646 -12.85611 -12.69913 -12.47551 -12.30006 -12.27070 -12.13093 -11.89225 -11.67376 -11.48482 -11.13232 -10.95525 -10.74768 -10.57483 -10.46132 -10.43428 -10.25146 -10.13900 -10.07793 -9.06608 -8.79411 -8.34941 -8.26324 -7.88061 -7.34258 -5.98238 -4.05495 2.21413 2.75560 2.95178 3.31621 3.38290 3.41753 4.03161 4.34156 4.49692 4.55753 4.60166 4.65038 4.66526 4.91013 5.03232 5.04866 5.15924 5.25209 5.32360 5.52895 5.60929 5.65150 5.71747 5.86586 5.88062 6.01171 6.04239 6.10075 6.20395 6.25848 6.37097 6.53406 6.58126 6.89101 6.97743 7.06949 7.20300 7.31932 7.43505 7.63476 7.70404 7.84593 8.15797 8.32551 8.76119 8.95350 9.32348 9.61473 11.06991 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.018796 B = 0.004715 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.322949 B = 5937.004191 C = 6556.184492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.522 4.522 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.587 5.587 13 C 0.087 3.913 14 C 0.579 3.421 15 O -0.562 6.562 16 C -0.208 4.208 17 C -0.167 4.167 18 C -0.027 4.027 19 N -0.446 5.446 20 C 0.061 3.939 21 C 0.097 3.903 22 C -0.048 4.048 23 C -0.139 4.139 24 C -0.139 4.139 25 C -0.150 4.150 26 H 0.011 0.989 27 H 0.092 0.908 28 H 0.028 0.972 29 H 0.262 0.738 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.146 0.854 34 H 0.162 0.838 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.130 0.870 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.006 -6.423 16.561 20.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.158 3.842 3 H 0.080 0.920 4 C -0.561 4.561 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.316 5.316 13 C -0.057 4.057 14 C 0.367 3.633 15 O -0.443 6.443 16 C -0.218 4.218 17 C -0.191 4.191 18 C -0.153 4.153 19 N -0.122 5.122 20 C -0.080 4.080 21 C -0.017 4.017 22 C -0.067 4.067 23 C -0.177 4.177 24 C -0.176 4.176 25 C -0.187 4.187 26 H 0.030 0.970 27 H 0.110 0.890 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.164 0.836 34 H 0.179 0.821 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.148 0.852 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.292 -5.740 16.521 20.293 hybrid contribution 0.105 -0.763 -0.780 1.097 sum 10.397 -6.503 15.740 19.954 Atomic orbital electron populations 1.22071 0.98353 0.99281 1.00676 1.18906 0.90827 0.94512 0.79948 0.91964 1.21357 1.31507 1.12857 0.90338 0.92304 1.24886 0.95069 0.94995 0.98861 1.69890 1.36582 1.22635 1.23575 0.86521 0.79173 0.79300 0.82542 1.20670 1.21166 1.19994 1.48016 1.48910 1.11589 1.23132 1.21724 0.98810 0.83540 1.01631 1.17381 0.78597 0.86030 0.81284 1.90676 1.61931 1.15298 1.76403 1.20454 0.96074 1.03354 1.01879 1.22176 1.00134 0.99343 0.97484 1.21589 0.87647 1.01772 1.04305 1.43282 1.13827 1.29496 1.25628 1.22311 0.87509 1.03175 0.95016 1.19872 0.96361 0.94875 0.90619 1.21406 0.90907 0.95510 0.98854 1.23065 0.95423 0.97603 1.01609 1.22809 0.96746 0.99128 0.98911 1.23332 0.96257 1.01784 0.97365 0.97024 0.88990 0.95274 0.92805 0.94401 0.90702 0.92107 0.83628 0.82060 0.90959 0.90114 0.89091 0.85224 0.90597 0.90496 0.91556 0.89672 0.89784 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 8.97 37.16 0.33 -3.33 16 2 C 0.26 6.95 2.63 -69.08 -0.18 6.77 16 3 H 0.06 1.93 6.91 -51.93 -0.36 1.57 16 4 C -0.52 -14.59 7.96 -34.44 -0.27 -14.87 16 5 H 0.06 1.63 7.42 -52.49 -0.39 1.24 16 6 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.74 11.32 55.43 0.63 -25.11 16 8 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.59 -13.68 2.75 -176.59 -0.49 -14.17 16 13 C 0.09 1.64 7.99 59.85 0.48 2.12 16 14 C 0.58 13.46 7.46 -12.60 -0.09 13.36 16 15 O -0.56 -14.85 14.81 5.26 0.08 -14.77 16 16 C -0.21 -3.91 5.49 -103.35 -0.57 -4.48 16 17 C -0.17 -2.53 8.76 -37.50 -0.33 -2.86 16 18 C -0.03 -0.33 11.34 -16.82 -0.19 -0.53 16 19 N -0.45 -5.57 3.09 -119.88 -0.37 -5.94 16 20 C 0.06 0.49 9.00 59.84 0.54 1.03 16 21 C 0.10 1.56 6.10 -81.88 -0.50 1.07 16 22 C -0.05 -0.71 3.96 -90.87 -0.36 -1.07 16 23 C -0.14 -1.69 7.16 -25.92 -0.19 -1.88 16 24 C -0.14 -1.39 8.04 -25.92 -0.21 -1.60 16 25 C -0.15 -1.68 7.17 -25.83 -0.19 -1.87 16 26 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 28 H 0.03 0.67 7.67 -51.93 -0.40 0.28 16 29 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 30 H 0.04 0.63 7.36 -51.93 -0.38 0.25 16 31 H 0.07 1.47 7.10 -51.93 -0.37 1.10 16 32 H 0.06 1.04 5.84 -51.93 -0.30 0.73 16 33 H 0.15 2.01 6.45 -52.49 -0.34 1.67 16 34 H 0.16 1.39 8.06 -52.49 -0.42 0.96 16 35 H 0.07 0.49 7.42 -51.93 -0.39 0.10 16 36 H 0.08 0.46 8.13 -51.93 -0.42 0.04 16 37 H 0.09 0.68 4.28 -51.93 -0.22 0.46 16 38 H 0.13 2.39 6.52 -51.93 -0.34 2.06 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.08 0.83 6.18 -51.93 -0.32 0.51 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.08 0.79 4.32 -51.93 -0.22 0.56 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 338.91 15.07 5.11 5.11 Total: -1.00 -33.33 338.91 -8.32 -41.65 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -6.44 Total: 3.20 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -1.82 Total: -6.44 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: -0.23 Total: -45.22 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.08 Total: -14.77 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.33 -8.32 -41.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339932267.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.677 kcal (2) G-P(sol) polarization free energy of solvation -33.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds