Wall clock time and date at job start Tue Mar 31 2020 08:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47240 * 2 1 4 4 C 1.50706 * 109.46895 * 240.00658 * 2 1 3 5 5 H 1.07997 * 119.99544 * 239.99698 * 4 2 1 6 6 C 1.37877 * 120.00240 * 59.99901 * 4 2 1 7 7 N 1.31511 * 119.99928 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99767 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46859 * 90.00027 * 8 6 4 10 10 H 1.48499 * 109.46695 * 210.00009 * 8 6 4 11 11 H 1.48504 * 109.47119 * 329.99727 * 8 6 4 12 12 N 1.46496 * 109.47371 * 120.00290 * 2 1 3 13 13 C 1.46498 * 119.99590 * 60.00077 * 12 2 1 14 14 C 1.34775 * 120.00013 * 240.00002 * 12 2 1 15 15 O 1.21625 * 119.99937 * 4.56316 * 14 12 2 16 16 C 1.47258 * 119.99705 * 184.56319 * 14 12 2 17 17 C 1.46692 * 126.94534 * 323.56290 * 16 14 12 18 18 C 1.34486 * 106.33500 * 180.02562 * 17 16 14 19 19 N 1.36452 * 108.85588 * 359.74015 * 18 17 16 20 20 C 1.46495 * 124.84905 * 180.30769 * 19 18 17 21 21 C 1.34652 * 110.29635 * 0.44136 * 19 18 17 22 22 C 1.50703 * 125.80357 * 179.82868 * 21 19 18 23 23 C 1.53782 * 113.61458 * 59.68986 * 22 21 19 24 24 C 1.53780 * 87.08133 * 220.02641 * 23 22 21 25 25 C 1.53784 * 87.17366 * 25.38856 * 24 23 22 26 26 H 1.08994 * 109.46731 * 300.00087 * 1 2 3 27 27 H 1.09002 * 109.46829 * 59.99761 * 1 2 3 28 28 H 1.08992 * 109.47011 * 179.97438 * 1 2 3 29 29 H 0.96999 * 120.00081 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.46987 * 264.81686 * 13 12 2 31 31 H 1.08998 * 109.47902 * 24.82135 * 13 12 2 32 32 H 1.09005 * 109.46940 * 144.82203 * 13 12 2 33 33 H 1.07997 * 126.83125 * 0.02562 * 17 16 14 34 34 H 1.07998 * 125.56919 * 180.02562 * 18 17 16 35 35 H 1.09002 * 109.46892 * 270.15275 * 20 19 18 36 36 H 1.09001 * 109.47606 * 30.15355 * 20 19 18 37 37 H 1.09001 * 109.47101 * 150.15668 * 20 19 18 38 38 H 1.08993 * 112.85294 * 190.89114 * 22 21 19 39 39 H 1.08993 * 113.61322 * 105.47295 * 23 22 21 40 40 H 1.09006 * 113.60987 * 334.57110 * 23 22 21 41 41 H 1.09000 * 113.61573 * 139.98197 * 24 23 22 42 42 H 1.09003 * 113.60955 * 270.80260 * 24 23 22 43 43 H 1.09001 * 113.60736 * 89.16182 * 25 24 23 44 44 H 1.09000 * 113.61091 * 220.06487 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9436 0.8304 -2.6034 8 14 2.3213 -1.1201 -4.0081 9 1 1.3426 -2.1614 -4.4120 10 1 2.4865 -0.1410 -5.1123 11 1 3.6293 -1.7581 -3.7124 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4278 14 6 2.7933 -0.0357 2.0832 15 8 3.0188 1.1502 1.9346 16 6 3.3668 -0.7559 3.2325 17 6 2.7323 -1.8281 4.0070 18 6 3.6172 -2.1846 4.9549 19 7 4.7407 -1.4223 4.8184 20 6 5.9303 -1.5252 5.6672 21 6 4.5985 -0.5600 3.7940 22 6 5.6247 0.4455 3.3392 23 6 6.9576 -0.1874 2.9058 24 6 7.6547 0.9880 3.6110 25 6 6.4016 1.1016 4.4952 26 1 -0.3632 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.7089 1.1617 -3.4843 30 1 0.7897 -2.1449 2.0761 31 1 1.4398 -2.5735 0.4754 32 1 2.5007 -2.6050 1.9044 33 1 1.7500 -2.2477 3.8476 34 1 3.4653 -2.9522 5.6992 35 1 5.8275 -0.8536 6.5196 36 1 6.0355 -2.5502 6.0228 37 1 6.8129 -1.2482 5.0908 38 1 5.2266 1.1607 2.6195 39 1 7.1050 -0.1984 1.8260 40 1 7.1535 -1.1537 3.3707 41 1 8.5512 0.6987 4.1592 42 1 7.8134 1.8521 2.9657 43 1 6.4454 0.4884 5.3952 44 1 6.1010 2.1298 4.6963 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339932267.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:44 Heat of formation + Delta-G solvation = 24.808787 kcal Electronic energy + Delta-G solvation = -24043.457419 eV Core-core repulsion = 20769.095910 eV Total energy + Delta-G solvation = -3274.361509 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.55435 -40.22212 -39.15381 -37.03240 -34.85352 -33.62083 -31.31305 -30.66173 -27.63626 -27.55548 -27.27625 -26.57807 -25.95441 -23.82127 -22.05113 -20.99675 -20.27582 -19.45865 -18.47073 -17.91667 -17.34866 -16.65247 -16.53037 -16.27467 -15.86030 -15.72502 -15.34307 -14.65761 -14.41151 -14.25724 -14.02332 -13.85958 -13.61345 -13.46556 -13.29337 -13.16579 -12.99688 -12.97563 -12.86969 -12.69741 -12.60870 -12.46509 -12.19339 -12.12244 -11.41603 -11.39912 -11.22322 -11.19415 -10.65461 -10.47036 -9.41995 -9.27489 -8.95505 -8.13877 -6.30935 0.93886 1.40149 1.42136 1.52438 1.62877 1.97903 2.33601 2.49537 2.73132 3.13083 3.58787 3.61375 3.74737 3.94251 4.00870 4.09306 4.18360 4.32995 4.43873 4.54619 4.59384 4.61353 4.69356 4.75918 4.77692 4.80659 4.86971 4.90401 5.01970 5.03729 5.04308 5.06635 5.08692 5.15407 5.31668 5.47635 5.50716 5.64304 5.70314 5.87085 6.07543 6.17633 6.21966 6.49476 6.76765 6.94322 7.34450 7.58747 8.90789 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.018796 B = 0.004715 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.322949 B = 5937.004191 C = 6556.184492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.262 3.738 3 H 0.005 0.995 4 C -0.538 4.538 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.968 3.032 9 H -0.265 1.265 10 H -0.283 1.283 11 H -0.272 1.272 12 N -0.596 5.596 13 C 0.091 3.909 14 C 0.567 3.433 15 O -0.615 6.615 16 C -0.259 4.259 17 C -0.188 4.188 18 C 0.001 3.999 19 N -0.436 5.436 20 C 0.048 3.952 21 C 0.098 3.902 22 C -0.072 4.072 23 C -0.134 4.134 24 C -0.125 4.125 25 C -0.138 4.138 26 H 0.015 0.985 27 H 0.069 0.931 28 H 0.046 0.954 29 H 0.265 0.735 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.154 0.846 34 H 0.212 0.788 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.075 0.925 43 H 0.113 0.887 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.875 -9.618 19.095 24.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.160 3.840 3 H 0.023 0.977 4 C -0.576 4.576 5 H 0.076 0.924 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.793 3.207 9 H -0.190 1.190 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.325 5.325 13 C -0.052 4.052 14 C 0.359 3.641 15 O -0.500 6.500 16 C -0.269 4.269 17 C -0.212 4.212 18 C -0.126 4.126 19 N -0.111 5.111 20 C -0.091 4.091 21 C -0.019 4.019 22 C -0.091 4.091 23 C -0.171 4.171 24 C -0.162 4.162 25 C -0.175 4.175 26 H 0.034 0.966 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.172 0.828 34 H 0.228 0.772 35 H 0.110 0.890 36 H 0.133 0.867 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.094 0.906 43 H 0.131 0.869 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.163 -8.980 19.093 24.354 hybrid contribution -0.447 0.268 -1.486 1.575 sum 11.716 -8.712 17.607 22.873 Atomic orbital electron populations 1.21854 0.97204 1.00000 0.99735 1.18528 0.91647 0.92080 0.81715 0.97695 1.21543 1.31921 1.12977 0.91157 0.92449 1.25770 0.95049 0.95644 1.02028 1.70036 1.37347 1.23860 1.24442 0.85411 0.78803 0.78287 0.78232 1.19014 1.20866 1.19704 1.48035 1.49161 1.13224 1.22124 1.21879 1.00604 0.80940 1.01755 1.18196 0.77857 0.85768 0.82318 1.90623 1.63582 1.17781 1.77971 1.20272 0.98408 1.06076 1.02148 1.22297 1.01419 0.99097 0.98394 1.22260 0.86106 1.00961 1.03275 1.43570 1.15280 1.27792 1.24444 1.22732 0.85534 1.06052 0.94773 1.19911 0.95575 0.95227 0.91232 1.21384 0.92079 0.95585 1.00082 1.23085 0.93790 0.99470 1.00800 1.22753 0.97469 0.97744 0.98230 1.23354 0.95506 1.01362 0.97250 0.96569 0.91219 0.93490 0.92587 0.91972 0.91638 0.90061 0.82819 0.77160 0.89009 0.86658 0.88543 0.90489 0.92708 0.88155 0.88011 0.90583 0.86869 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.82 8.97 71.98 0.65 -6.18 16 2 C 0.26 15.03 2.63 44.25 0.12 15.15 16 3 H 0.01 0.34 6.91 -2.39 -0.02 0.33 16 4 C -0.54 -31.29 7.96 25.60 0.20 -31.08 16 5 H 0.06 3.27 7.42 -2.91 -0.02 3.25 16 6 C 0.01 0.83 5.30 84.66 0.45 1.28 16 7 N -0.92 -55.24 11.32 21.45 0.24 -55.00 16 8 Si 0.97 44.80 29.54 68.60 2.03 46.82 16 9 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 12 N -0.60 -29.32 2.75 -830.85 -2.29 -31.60 16 13 C 0.09 3.43 7.99 127.77 1.02 4.46 16 14 C 0.57 28.31 7.46 86.61 0.65 28.95 16 15 O -0.61 -35.90 14.81 -4.11 -0.06 -35.96 16 16 C -0.26 -9.97 5.49 -19.04 -0.10 -10.08 16 17 C -0.19 -5.38 8.76 23.62 0.21 -5.18 16 18 C 0.00 0.01 11.34 83.12 0.94 0.96 16 19 N -0.44 -9.33 3.09 -533.19 -1.65 -10.97 16 20 C 0.05 0.50 9.00 127.77 1.15 1.65 16 21 C 0.10 3.11 6.10 41.78 0.25 3.36 16 22 C -0.07 -2.22 3.96 -10.95 -0.04 -2.26 16 23 C -0.13 -3.15 7.16 31.12 0.22 -2.93 16 24 C -0.12 -2.28 8.04 31.12 0.25 -2.03 16 25 C -0.14 -2.90 7.17 31.18 0.22 -2.67 16 26 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.07 3.99 6.07 -2.39 -0.01 3.97 16 28 H 0.05 2.24 7.67 -2.39 -0.02 2.22 16 29 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 30 H 0.06 2.03 7.36 -2.38 -0.02 2.01 16 31 H 0.06 2.57 7.10 -2.39 -0.02 2.56 16 32 H 0.08 2.73 5.84 -2.38 -0.01 2.72 16 33 H 0.15 3.95 6.45 -2.91 -0.02 3.94 16 34 H 0.21 2.19 8.06 -2.91 -0.02 2.16 16 35 H 0.09 0.69 7.42 -2.39 -0.02 0.67 16 36 H 0.11 0.51 8.13 -2.39 -0.02 0.49 16 37 H 0.10 0.94 4.28 -2.39 -0.01 0.93 16 38 H 0.08 3.19 6.52 -2.39 -0.02 3.18 16 39 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.10 1.87 6.18 -2.38 -0.01 1.85 16 41 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.11 1.69 4.32 -2.39 -0.01 1.68 16 44 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -80.97 338.91 5.46 -75.51 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 1.00 Total: 17.79 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 6.18 Total: -6.60 kcal Atomic # 7 Polarization: -93.88 SS G_CDS: -3.69 Total: -97.57 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -0.06 Total: -35.96 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -80.97 5.46 -75.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339932267.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.319 kcal (2) G-P(sol) polarization free energy of solvation -80.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds