Wall clock time and date at job start Tue Mar 31 2020 08:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46967 * 2 1 4 4 C 1.50703 * 109.46975 * 119.99524 * 2 1 3 5 5 H 1.08008 * 119.99906 * 120.00571 * 4 2 1 6 6 C 1.37877 * 120.00264 * 300.00098 * 4 2 1 7 7 N 1.31513 * 120.00040 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47327 * 60.00090 * 8 6 4 10 10 H 1.48508 * 109.46979 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47169 * 300.00048 * 8 6 4 12 12 N 1.46500 * 109.47373 * 239.99746 * 2 1 3 13 13 C 1.46501 * 119.99907 * 299.99586 * 12 2 1 14 14 C 1.34775 * 119.99957 * 120.00059 * 12 2 1 15 15 O 1.21634 * 119.99778 * 4.55202 * 14 12 2 16 16 C 1.47258 * 120.00162 * 184.55519 * 14 12 2 17 17 C 1.46693 * 126.93839 * 323.58479 * 16 14 12 18 18 C 1.34490 * 106.33048 * 179.97438 * 17 16 14 19 19 N 1.36447 * 108.85451 * 359.74398 * 18 17 16 20 20 C 1.46508 * 124.84882 * 180.29753 * 19 18 17 21 21 C 1.34654 * 110.29974 * 0.44046 * 19 18 17 22 22 C 1.50698 * 125.80325 * 179.82838 * 21 19 18 23 23 C 1.53778 * 113.61761 * 59.68459 * 22 21 19 24 24 C 1.53778 * 87.08604 * 220.02054 * 23 22 21 25 25 C 1.53784 * 87.16987 * 25.39074 * 24 23 22 26 26 H 1.08997 * 109.47550 * 299.99975 * 1 2 3 27 27 H 1.08999 * 109.47400 * 60.00539 * 1 2 3 28 28 H 1.09001 * 109.46967 * 180.02562 * 1 2 3 29 29 H 0.96998 * 120.00488 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.47244 * 264.79797 * 13 12 2 31 31 H 1.09001 * 109.46825 * 24.80243 * 13 12 2 32 32 H 1.09006 * 109.46774 * 144.79936 * 13 12 2 33 33 H 1.07997 * 126.83705 * 359.97225 * 17 16 14 34 34 H 1.07996 * 125.57281 * 179.97438 * 18 17 16 35 35 H 1.09004 * 109.46818 * 270.15659 * 20 19 18 36 36 H 1.08994 * 109.47108 * 30.15805 * 20 19 18 37 37 H 1.09003 * 109.46749 * 150.16202 * 20 19 18 38 38 H 1.08995 * 112.85330 * 190.88431 * 22 21 19 39 39 H 1.08997 * 113.61686 * 105.46916 * 23 22 21 40 40 H 1.09003 * 113.61737 * 334.57110 * 23 22 21 41 41 H 1.08999 * 113.61181 * 139.97809 * 24 23 22 42 42 H 1.08999 * 113.61923 * 270.80258 * 24 23 22 43 43 H 1.09000 * 113.61380 * 89.15839 * 25 24 23 44 44 H 1.09005 * 113.61389 * 220.05872 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3224 -1.1193 4.0080 9 1 3.8074 -1.1187 4.0079 10 1 1.8268 -0.4196 5.2205 11 1 1.8280 -2.5195 4.0083 12 7 2.0184 -0.6907 -1.1961 13 6 1.6645 -2.0933 -1.4278 14 6 2.7932 -0.0357 -2.0833 15 8 3.1555 1.1020 -1.8508 16 6 3.2013 -0.6973 -3.3340 17 6 3.5395 -2.1135 -3.5124 18 6 3.8498 -2.2674 -4.8119 19 7 3.7231 -1.0633 -5.4411 20 6 3.9706 -0.8334 -6.8667 21 6 3.3410 -0.1158 -4.5639 22 6 3.1016 1.3372 -4.8843 23 6 2.0048 1.5631 -5.9382 24 6 2.9020 2.6676 -6.5212 25 6 4.0954 1.9162 -5.9077 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.7080 1.1610 3.4844 30 1 2.4613 -2.7357 -1.0529 31 1 0.7356 -2.3245 -0.9066 32 1 1.5334 -2.2631 -2.4966 33 1 3.5394 -2.8801 -2.7516 34 1 4.1468 -3.1934 -5.2816 35 1 5.0174 -0.5684 -7.0156 36 1 3.7425 -1.7407 -7.4260 37 1 3.3363 -0.0201 -7.2191 38 1 2.9842 1.9534 -3.9930 39 1 1.0689 1.9353 -5.5216 40 1 1.8631 0.7160 -6.6095 41 1 2.9140 2.6905 -7.6109 42 1 2.7299 3.6488 -6.0789 43 1 4.5264 1.1659 -6.5706 44 1 4.8449 2.5732 -5.4665 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339932269.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:50 Heat of formation + Delta-G solvation = 25.667556 kcal Electronic energy + Delta-G solvation = -23989.438384 eV Core-core repulsion = 20715.114114 eV Total energy + Delta-G solvation = -3274.324270 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.55862 -40.22170 -39.14897 -37.03698 -34.85272 -33.62226 -31.30824 -30.66879 -27.65985 -27.55870 -27.26402 -26.56812 -25.95155 -23.82830 -22.00713 -21.01275 -20.28457 -19.44556 -18.48191 -17.89728 -17.33975 -16.65673 -16.51507 -16.28572 -15.89144 -15.71766 -15.33644 -14.65119 -14.48830 -14.23159 -14.11494 -13.86205 -13.50284 -13.46466 -13.30194 -13.15783 -13.01048 -12.96439 -12.86486 -12.68797 -12.66431 -12.43272 -12.16566 -12.11108 -11.40975 -11.38972 -11.23050 -11.16974 -10.65499 -10.46739 -9.42137 -9.28035 -8.96567 -8.12985 -6.30131 0.93117 1.40402 1.43845 1.51248 1.62016 1.98253 2.38679 2.45354 2.71176 3.13588 3.59584 3.61800 3.75633 3.94280 4.01058 4.09623 4.19071 4.32247 4.43847 4.53056 4.59023 4.61810 4.70273 4.73356 4.80062 4.82693 4.86293 4.87746 5.00996 5.03890 5.05289 5.06296 5.09221 5.15272 5.31354 5.47050 5.51452 5.65447 5.71793 5.86601 6.06432 6.17946 6.22096 6.48943 6.77040 6.94202 7.35120 7.59001 8.91084 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.024180 B = 0.004291 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.703648 B = 6523.430141 C = 7107.147021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.262 3.738 3 H 0.005 0.995 4 C -0.539 4.539 5 H 0.056 0.944 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.967 3.033 9 H -0.279 1.279 10 H -0.280 1.280 11 H -0.261 1.261 12 N -0.597 5.597 13 C 0.094 3.906 14 C 0.567 3.433 15 O -0.614 6.614 16 C -0.259 4.259 17 C -0.190 4.190 18 C 0.002 3.998 19 N -0.435 5.435 20 C 0.049 3.951 21 C 0.100 3.900 22 C -0.071 4.071 23 C -0.131 4.131 24 C -0.125 4.125 25 C -0.140 4.140 26 H 0.070 0.930 27 H 0.017 0.983 28 H 0.047 0.953 29 H 0.265 0.735 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.150 0.850 34 H 0.211 0.789 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.076 0.924 43 H 0.112 0.888 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.921 -6.738 -23.976 25.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.160 3.840 3 H 0.023 0.977 4 C -0.577 4.577 5 H 0.075 0.925 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.792 3.208 9 H -0.204 1.204 10 H -0.206 1.206 11 H -0.186 1.186 12 N -0.326 5.326 13 C -0.048 4.048 14 C 0.358 3.642 15 O -0.499 6.499 16 C -0.269 4.269 17 C -0.214 4.214 18 C -0.125 4.125 19 N -0.110 5.110 20 C -0.091 4.091 21 C -0.018 4.018 22 C -0.091 4.091 23 C -0.169 4.169 24 C -0.162 4.162 25 C -0.178 4.178 26 H 0.089 0.911 27 H 0.036 0.964 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.168 0.832 34 H 0.228 0.772 35 H 0.108 0.892 36 H 0.134 0.866 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.095 0.905 43 H 0.130 0.870 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.053 -6.048 -24.064 25.141 hybrid contribution 0.172 0.042 1.833 1.841 sum 4.224 -6.006 -22.232 23.413 Atomic orbital electron populations 1.21864 0.97060 1.00062 0.99840 1.18526 0.91607 0.92075 0.81791 0.97665 1.21536 1.31918 1.12992 0.91279 0.92549 1.25763 0.95047 0.95676 1.02009 1.70018 1.37301 1.23902 1.24485 0.85480 0.78310 0.79048 0.77991 1.20444 1.20554 1.18557 1.48038 1.48922 1.13268 1.22346 1.21838 1.00571 0.80604 1.01805 1.18202 0.77509 0.84819 0.83655 1.90630 1.58555 1.21562 1.79137 1.20255 1.17733 0.96386 0.92530 1.22289 1.08208 0.93483 0.97409 1.22236 1.07791 0.90163 0.92327 1.43575 1.51294 1.06861 1.09318 1.22737 1.03895 1.05944 0.76487 1.19926 1.01608 0.91751 0.88499 1.21391 1.00095 0.88782 0.98783 1.23074 0.96803 1.00078 0.96921 1.22753 0.94341 0.97298 1.01813 1.23370 0.96809 1.00382 0.97199 0.91130 0.96392 0.93401 0.92593 0.92965 0.91535 0.89584 0.83215 0.77223 0.89160 0.86642 0.88368 0.90352 0.92285 0.88151 0.88079 0.90495 0.86978 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.79 8.96 71.98 0.64 -6.14 16 2 C 0.26 15.02 2.63 44.24 0.12 15.13 16 3 H 0.01 0.36 6.91 -2.39 -0.02 0.35 16 4 C -0.54 -31.61 8.37 25.60 0.21 -31.39 16 5 H 0.06 3.24 7.65 -2.91 -0.02 3.22 16 6 C 0.01 0.83 5.30 84.65 0.45 1.28 16 7 N -0.92 -55.41 11.32 21.45 0.24 -55.16 16 8 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 9 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 12 N -0.60 -29.35 2.75 -830.85 -2.29 -31.64 16 13 C 0.09 3.59 8.25 127.77 1.05 4.64 16 14 C 0.57 28.28 7.46 86.61 0.65 28.92 16 15 O -0.61 -35.93 14.81 -4.14 -0.06 -35.99 16 16 C -0.26 -9.94 5.49 -19.04 -0.10 -10.05 16 17 C -0.19 -5.56 8.76 23.62 0.21 -5.35 16 18 C 0.00 0.03 11.34 83.12 0.94 0.97 16 19 N -0.44 -9.15 3.09 -533.18 -1.65 -10.80 16 20 C 0.05 0.48 9.00 127.77 1.15 1.63 16 21 C 0.10 3.09 6.10 41.78 0.25 3.34 16 22 C -0.07 -2.09 3.96 -10.96 -0.04 -2.14 16 23 C -0.13 -2.82 7.16 31.12 0.22 -2.59 16 24 C -0.12 -2.11 8.04 31.12 0.25 -1.86 16 25 C -0.14 -2.86 7.17 31.18 0.22 -2.64 16 26 H 0.07 4.01 6.07 -2.39 -0.01 3.99 16 27 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 2.27 6.67 -2.39 -0.02 2.25 16 29 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 30 H 0.05 1.87 7.36 -2.39 -0.02 1.85 16 31 H 0.07 2.51 6.44 -2.39 -0.02 2.49 16 32 H 0.09 2.79 5.84 -2.38 -0.01 2.78 16 33 H 0.15 4.11 6.45 -2.91 -0.02 4.09 16 34 H 0.21 2.25 8.06 -2.91 -0.02 2.22 16 35 H 0.09 0.67 7.42 -2.39 -0.02 0.65 16 36 H 0.12 0.46 8.13 -2.39 -0.02 0.44 16 37 H 0.10 0.87 4.28 -2.39 -0.01 0.86 16 38 H 0.08 3.12 6.52 -2.39 -0.02 3.11 16 39 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.10 1.67 6.18 -2.39 -0.01 1.66 16 41 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.11 1.63 4.32 -2.39 -0.01 1.62 16 44 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -81.25 338.12 5.51 -75.74 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 1.01 Total: 16.89 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 6.23 Total: -6.25 kcal Atomic # 7 Polarization: -93.91 SS G_CDS: -3.69 Total: -97.60 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -0.06 Total: -35.99 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -81.25 5.51 -75.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339932269.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.404 kcal (2) G-P(sol) polarization free energy of solvation -81.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds