Wall clock time and date at job start Tue Mar 31 2020 08:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53006 * 109.46846 * 65.00509 * 4 2 1 6 6 N 1.46497 * 109.46795 * 179.97438 * 5 4 2 7 7 C 1.34778 * 119.99736 * 179.97438 * 6 5 4 8 8 O 1.21586 * 119.99910 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99823 * 180.02562 * 7 6 5 10 10 C 1.46508 * 119.99541 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46624 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46633 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00016 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99433 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00303 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99746 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47192 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.46952 * 119.99845 * 16 14 12 19 19 H 1.48491 * 109.47250 * 239.99873 * 16 14 12 20 20 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 21 21 C 1.38237 * 119.99747 * 59.72563 * 20 2 1 22 22 C 1.38240 * 119.99788 * 179.81066 * 21 20 2 23 23 C 1.38236 * 119.99657 * 0.39831 * 22 21 20 24 24 C 1.38230 * 120.00403 * 359.85459 * 23 22 21 25 25 C 1.38232 * 120.00112 * 240.00114 * 20 2 1 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 30 30 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 31 31 H 1.09002 * 109.46824 * 299.99583 * 5 4 2 32 32 H 1.09001 * 109.47241 * 59.99481 * 5 4 2 33 33 H 0.96995 * 120.00714 * 0.02562 * 6 5 4 34 34 H 0.96989 * 120.00028 * 0.02562 * 9 7 6 35 35 H 1.08993 * 109.47143 * 300.00124 * 10 9 7 36 36 H 1.08998 * 109.46780 * 60.00233 * 10 9 7 37 37 H 1.08994 * 109.47097 * 300.00292 * 11 10 9 38 38 H 1.08998 * 109.46906 * 60.00249 * 11 10 9 39 39 H 0.97001 * 120.00595 * 179.97438 * 15 14 12 40 40 H 1.08003 * 120.00234 * 0.02562 * 21 20 2 41 41 H 1.07995 * 119.99993 * 180.23158 * 22 21 20 42 42 H 1.08005 * 119.99783 * 179.83592 * 23 22 21 43 43 H 1.08000 * 120.00473 * 179.97438 * 24 23 22 44 44 H 1.08005 * 119.99991 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6354 0.0689 -2.4953 6 7 2.1242 -0.6214 -3.6914 7 6 1.8835 -0.1054 -4.9130 8 8 1.2610 0.9333 -5.0222 9 7 2.3329 -0.7408 -6.0134 10 6 2.0716 -0.1795 -7.3412 11 6 2.6851 -1.0881 -8.4086 12 6 2.4169 -0.5104 -9.7744 13 1 1.8647 0.4126 -9.8714 14 6 2.8767 -1.1604 -10.9001 15 7 3.5496 -2.2841 -10.7819 16 14 2.5437 -0.4448 -12.5932 17 1 1.7729 0.8169 -12.4545 18 1 3.8331 -0.1641 -13.2742 19 1 1.7611 -1.4178 -13.3967 20 6 2.0323 -0.7104 1.2305 21 6 1.6936 -2.0322 1.4521 22 6 2.1576 -2.6850 2.5788 23 6 2.9535 -2.0136 3.4881 24 6 3.2878 -0.6903 3.2691 25 6 2.8270 -0.0386 2.1405 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.1264 -0.7995 -1.2055 30 1 1.6055 -1.7198 -1.2951 31 1 0.5490 0.1471 -2.5390 32 1 2.0700 1.0675 -2.4494 33 1 2.6205 -1.4503 -3.6043 34 1 2.8291 -1.5696 -5.9262 35 1 0.9958 -0.1070 -7.4998 36 1 2.5167 0.8131 -7.4100 37 1 3.7609 -1.1602 -8.2497 38 1 2.2403 -2.0809 -8.3398 39 1 3.8727 -2.7416 -11.5739 40 1 1.0694 -2.5559 0.7432 41 1 1.8961 -3.7187 2.7501 42 1 3.3138 -2.5228 4.3697 43 1 3.9092 -0.1656 3.9797 44 1 3.0883 0.9953 1.9693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343693242.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:33 Heat of formation + Delta-G solvation = -35.490467 kcal Electronic energy + Delta-G solvation = -21522.953075 eV Core-core repulsion = 18245.976794 eV Total energy + Delta-G solvation = -3276.976281 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.96552 -39.43686 -36.69279 -34.84251 -34.00366 -32.78433 -31.23471 -30.56512 -29.47074 -28.16445 -25.12317 -24.23843 -23.08478 -22.23013 -21.01380 -20.63434 -20.07256 -17.87476 -17.26812 -16.38230 -16.00771 -15.88301 -15.37970 -15.20246 -14.53470 -14.50276 -14.27034 -13.93738 -13.76440 -13.53565 -13.40721 -13.31728 -12.90056 -12.53667 -12.26408 -11.99779 -11.97425 -11.57964 -11.31358 -11.15666 -11.03372 -10.94410 -10.83071 -10.59883 -10.29615 -9.90786 -9.53798 -9.23651 -9.22726 -9.01064 -8.96044 -8.46666 -8.20717 -6.07686 -4.10063 1.03713 1.08425 3.08496 3.29758 3.37344 3.42959 3.47988 3.64225 4.27003 4.39398 4.42774 4.67194 4.69054 4.74397 4.80148 4.86920 4.99058 5.13684 5.15265 5.19511 5.29494 5.31128 5.42691 5.60487 5.66207 5.73015 5.75170 5.79585 5.95556 6.02559 6.16819 6.20437 6.33393 6.34827 6.42954 6.65333 6.69411 6.80871 7.04121 7.28298 7.59683 7.65779 7.91920 8.28362 8.47946 8.95352 9.04427 9.54610 11.04039 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.039566 B = 0.001996 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.506740 B =14027.604740 C =14387.055304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.049 4.049 3 H 0.082 0.918 4 C -0.123 4.123 5 C 0.139 3.861 6 N -0.755 5.755 7 C 0.697 3.303 8 O -0.599 6.599 9 N -0.739 5.739 10 C 0.140 3.860 11 C 0.012 3.988 12 C -0.519 4.519 13 H 0.060 0.940 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.073 4.073 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.127 4.127 24 C -0.119 4.119 25 C -0.118 4.118 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.394 0.606 34 H 0.393 0.607 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.261 0.739 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.544 -0.675 29.400 29.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.068 4.068 3 H 0.101 0.899 4 C -0.161 4.161 5 C 0.014 3.986 6 N -0.412 5.412 7 C 0.397 3.603 8 O -0.478 6.478 9 N -0.393 5.393 10 C 0.017 3.983 11 C -0.025 4.025 12 C -0.558 4.558 13 H 0.079 0.921 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.073 4.073 21 C -0.132 4.132 22 C -0.137 4.137 23 C -0.145 4.145 24 C -0.138 4.138 25 C -0.136 4.136 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.227 0.773 34 H 0.226 0.774 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.071 0.929 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.052 0.186 29.153 29.226 hybrid contribution 0.445 -0.587 -0.807 1.093 sum -1.606 -0.401 28.346 28.394 Atomic orbital electron populations 1.21937 0.93912 1.02381 1.02357 1.20084 0.96321 0.99245 0.91134 0.89931 1.21855 1.01759 0.99602 0.92852 1.21169 0.99499 0.95638 0.82262 1.45131 1.62303 1.28860 1.04859 1.16077 0.80110 0.83651 0.80444 1.90883 1.46454 1.24491 1.86004 1.45537 1.59728 1.27936 1.06100 1.21584 1.00132 0.97861 0.78705 1.19333 0.96344 0.94752 0.92100 1.21102 1.35465 1.08737 0.90508 0.92146 1.25004 0.94994 0.94907 0.99488 1.69964 1.37281 1.16634 1.29495 0.86451 0.78015 0.79223 0.83851 1.19563 1.20969 1.20962 1.19873 0.97216 0.94253 0.95938 1.21037 1.00121 0.94380 0.97658 1.21163 0.98015 0.99886 0.94660 1.21150 0.98918 0.94941 0.99510 1.21148 1.00009 0.94986 0.97606 1.21112 0.98048 0.99963 0.94441 0.92343 0.92480 0.91521 0.91058 0.91019 0.91552 0.91913 0.77327 0.77423 0.92809 0.92818 0.95971 0.95969 0.92938 0.86030 0.86164 0.86301 0.86188 0.86067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.76 37.16 0.33 -0.75 16 2 C -0.05 -0.36 2.56 -91.77 -0.24 -0.59 16 3 H 0.08 0.59 7.88 -51.93 -0.41 0.18 16 4 C -0.12 -0.97 4.54 -26.73 -0.12 -1.09 16 5 C 0.14 1.52 5.43 -4.04 -0.02 1.50 16 6 N -0.75 -9.70 5.56 -65.22 -0.36 -10.06 16 7 C 0.70 12.53 8.57 -86.91 -0.74 11.79 16 8 O -0.60 -13.23 16.34 5.29 0.09 -13.15 16 9 N -0.74 -13.40 5.56 -65.22 -0.36 -13.76 16 10 C 0.14 3.07 5.61 -4.03 -0.02 3.05 16 11 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 12 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 13 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 16 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 20 C -0.07 -0.57 4.78 -104.62 -0.50 -1.07 16 21 C -0.11 -0.87 8.76 -39.58 -0.35 -1.21 16 22 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 23 C -0.13 -0.89 10.05 -39.58 -0.40 -1.29 16 24 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 25 C -0.12 -0.89 9.67 -39.58 -0.38 -1.28 16 26 H 0.06 0.40 7.38 -51.93 -0.38 0.02 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.51 6.57 -51.93 -0.34 0.17 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.53 7.58 -51.93 -0.39 0.13 16 31 H 0.07 0.78 6.57 -51.93 -0.34 0.44 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.39 3.95 8.49 -40.82 -0.35 3.60 16 34 H 0.39 6.09 8.49 -40.82 -0.35 5.74 16 35 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.12 0.80 7.16 -52.48 -0.38 0.42 16 41 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 42 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 43 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 44 H 0.12 0.76 7.95 -52.48 -0.42 0.34 16 LS Contribution 365.35 15.07 5.51 5.51 Total: -1.00 -33.27 365.35 -10.34 -43.61 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -7.12 Total: 3.52 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -3.80 Total: -6.63 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 0.01 Total: -49.38 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.09 Total: -13.15 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.27 -10.34 -43.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343693242.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.118 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds